| 30 |  | char * output_orig;   /* output file name original value given at command line.  */ | 
| 31 |  | int step_arg; /* process every n frame (default='1').  */ | 
| 32 |  | char * step_orig;     /* process every n frame original value given at command line.  */ | 
| 33 | < | int nrbins_arg;       /* number of bins for distance (default='100').  */ | 
| 34 | < | char * nrbins_orig;   /* number of bins for distance original value given at command line.  */ | 
| 35 | < | int nbins_x_arg;  /* number of bins in x axis. */ | 
| 33 | > | int nbins_arg;        /* number of bins (general purpose) (default='100').  */ | 
| 34 | > | char * nbins_orig;    /* number of bins (general purpose) original value given at command line.  */ | 
| 35 | > | int nbins_x_arg;      /* number of bins in x axis (default='100').  */ | 
| 36 |  | char * nbins_x_orig;  /* number of bins in x axis original value given at command line.  */ | 
| 37 | < | int nbins_y_arg; /* number of bins in y axis. */ | 
| 37 | > | int nbins_y_arg;      /* number of bins in y axis (default='100').  */ | 
| 38 |  | char * nbins_y_orig;  /* number of bins in y axis original value given at command line.  */ | 
| 39 |  | int nanglebins_arg;   /* number of bins for cos(angle) (default='50').  */ | 
| 40 |  | char * nanglebins_orig;       /* number of bins for cos(angle) original value given at command line.  */ | 
| 41 |  | double length_arg;    /* maximum length (Defaults to 1/2 smallest length of first frame).  */ | 
| 42 |  | char * length_orig;   /* maximum length (Defaults to 1/2 smallest length of first frame) original value given at command line.  */ | 
| 43 | + | double rcut_arg;      /* cutoff radius (rcut).  */ | 
| 44 | + | char * rcut_orig;     /* cutoff radius (rcut) original value given at command line.  */ | 
| 45 |  | double zoffset_arg;   /* Where to set the zero for the slab_density calculation (default='0').  */ | 
| 46 |  | char * zoffset_orig;  /* Where to set the zero for the slab_density calculation original value given at command line.  */ | 
| 47 |  | char * sele1_arg;     /* select the first stuntdouble set.  */ | 
| 54 |  | char * refsele_orig;  /* select reference (use and only use with --gxyz) original value given at command line.  */ | 
| 55 |  | char * molname_arg;   /* molecule name.  */ | 
| 56 |  | char * molname_orig;  /* molecule name original value given at command line.  */ | 
| 57 | < | int begin_arg;        /* begin interanl index.  */ | 
| 58 | < | char * begin_orig;    /* begin interanl index original value given at command line.  */ | 
| 57 | > | int begin_arg;        /* begin internal index.  */ | 
| 58 | > | char * begin_orig;    /* begin internal index original value given at command line.  */ | 
| 59 |  | int end_arg;  /* end internal index.  */ | 
| 60 |  | char * end_orig;      /* end internal index original value given at command line.  */ | 
| 61 |  |  | 
| 64 |  | int input_given ;     /* Whether input was given.  */ | 
| 65 |  | int output_given ;    /* Whether output was given.  */ | 
| 66 |  | int step_given ;      /* Whether step was given.  */ | 
| 67 | < | int nbins_x_given;  /*  Whether nbins_x was given */ | 
| 68 | < | int nbins_y_given; /* Whether nbins_y was given */ | 
| 69 | < | int nrbins_given ;    /* Whether nrbins was given.  */ | 
| 67 | > | int nbins_given ;     /* Whether nbins was given.  */ | 
| 68 | > | int nbins_x_given ;   /* Whether nbins_x was given.  */ | 
| 69 | > | int nbins_y_given ;   /* Whether nbins_y was given.  */ | 
| 70 |  | int nanglebins_given ;        /* Whether nanglebins was given.  */ | 
| 71 |  | int length_given ;    /* Whether length was given.  */ | 
| 72 | + | int rcut_given ;      /* Whether rcut was given.  */ | 
| 73 |  | int zoffset_given ;   /* Whether zoffset was given.  */ | 
| 74 |  | int sele1_given ;     /* Whether sele1 was given.  */ | 
| 75 |  | int sele2_given ;     /* Whether sele2 was given.  */ | 
| 78 |  | int molname_given ;   /* Whether molname was given.  */ | 
| 79 |  | int begin_given ;     /* Whether begin was given.  */ | 
| 80 |  | int end_given ;       /* Whether end was given.  */ | 
| 81 | + | int bo_given ;        /* Whether bo was given.  */ | 
| 82 |  | int gofr_given ;      /* Whether gofr was given.  */ | 
| 83 |  | int r_theta_given ;   /* Whether r_theta was given.  */ | 
| 84 |  | int r_omega_given ;   /* Whether r_omega was given.  */ | 
| 85 |  | int theta_omega_given ;       /* Whether theta_omega was given.  */ | 
| 86 |  | int gxyz_given ;      /* Whether gxyz was given.  */ | 
| 87 |  | int p2_given ;        /* Whether p2 was given.  */ | 
| 88 | + | int rp2_given ;       /* Whether rp2 was given.  */ | 
| 89 |  | int scd_given ;       /* Whether scd was given.  */ | 
| 90 |  | int density_given ;   /* Whether density was given.  */ | 
| 91 |  | int slab_density_given ;      /* Whether slab_density was given.  */ | 
| 92 | < | int hxy_given;         /*Whether hxy was given. */ | 
| 92 | > | int hxy_given ;       /* Whether hxy was given.  */ | 
| 93 |  |  | 
| 94 |  | int staticProps_group_counter; /* counter for group staticProps */ | 
| 95 |  | } ; |