| 30 | 
  | 
  char * output_orig;   /* output file name original value given at command line.  */ | 
| 31 | 
  | 
  int step_arg; /* process every n frame (default='1').  */ | 
| 32 | 
  | 
  char * step_orig;     /* process every n frame original value given at command line.  */ | 
| 33 | 
< | 
  int nrbins_arg;       /* number of bins for distance (default='100').  */ | 
| 34 | 
< | 
  char * nrbins_orig;   /* number of bins for distance original value given at command line.  */ | 
| 33 | 
> | 
  int nbins_arg;        /* number of bins (general purpose) (default='100').  */ | 
| 34 | 
> | 
  char * nbins_orig;    /* number of bins (general purpose) original value given at command line.  */ | 
| 35 | 
> | 
  int nbins_x_arg;      /* number of bins in x axis (default='100').  */ | 
| 36 | 
> | 
  char * nbins_x_orig;  /* number of bins in x axis original value given at command line.  */ | 
| 37 | 
> | 
  int nbins_y_arg;      /* number of bins in y axis (default='100').  */ | 
| 38 | 
> | 
  char * nbins_y_orig;  /* number of bins in y axis original value given at command line.  */ | 
| 39 | 
  | 
  int nanglebins_arg;   /* number of bins for cos(angle) (default='50').  */ | 
| 40 | 
  | 
  char * nanglebins_orig;       /* number of bins for cos(angle) original value given at command line.  */ | 
| 41 | 
  | 
  double length_arg;    /* maximum length (Defaults to 1/2 smallest length of first frame).  */ | 
| 42 | 
  | 
  char * length_orig;   /* maximum length (Defaults to 1/2 smallest length of first frame) original value given at command line.  */ | 
| 43 | 
+ | 
  int LegendreL_arg;    /* Order of Legendre Polynomial (used for Bond Order calculations).  */ | 
| 44 | 
+ | 
  char * LegendreL_orig;        /* Order of Legendre Polynomial (used for Bond Order calculations) original value given at command line.  */ | 
| 45 | 
+ | 
  double rcut_arg;      /* cutoff radius (rcut).  */ | 
| 46 | 
+ | 
  char * rcut_orig;     /* cutoff radius (rcut) original value given at command line.  */ | 
| 47 | 
  | 
  double zoffset_arg;   /* Where to set the zero for the slab_density calculation (default='0').  */ | 
| 48 | 
  | 
  char * zoffset_orig;  /* Where to set the zero for the slab_density calculation original value given at command line.  */ | 
| 49 | 
  | 
  char * sele1_arg;     /* select the first stuntdouble set.  */ | 
| 56 | 
  | 
  char * refsele_orig;  /* select reference (use and only use with --gxyz) original value given at command line.  */ | 
| 57 | 
  | 
  char * molname_arg;   /* molecule name.  */ | 
| 58 | 
  | 
  char * molname_orig;  /* molecule name original value given at command line.  */ | 
| 59 | 
< | 
  int begin_arg;        /* begin interanl index.  */ | 
| 60 | 
< | 
  char * begin_orig;    /* begin interanl index original value given at command line.  */ | 
| 59 | 
> | 
  int begin_arg;        /* begin internal index.  */ | 
| 60 | 
> | 
  char * begin_orig;    /* begin internal index original value given at command line.  */ | 
| 61 | 
  | 
  int end_arg;  /* end internal index.  */ | 
| 62 | 
  | 
  char * end_orig;      /* end internal index original value given at command line.  */ | 
| 63 | 
  | 
   | 
| 66 | 
  | 
  int input_given ;     /* Whether input was given.  */ | 
| 67 | 
  | 
  int output_given ;    /* Whether output was given.  */ | 
| 68 | 
  | 
  int step_given ;      /* Whether step was given.  */ | 
| 69 | 
< | 
  int nrbins_given ;    /* Whether nrbins was given.  */ | 
| 69 | 
> | 
  int nbins_given ;     /* Whether nbins was given.  */ | 
| 70 | 
> | 
  int nbins_x_given ;   /* Whether nbins_x was given.  */ | 
| 71 | 
> | 
  int nbins_y_given ;   /* Whether nbins_y was given.  */ | 
| 72 | 
  | 
  int nanglebins_given ;        /* Whether nanglebins was given.  */ | 
| 73 | 
  | 
  int length_given ;    /* Whether length was given.  */ | 
| 74 | 
+ | 
  int LegendreL_given ; /* Whether LegendreL was given.  */ | 
| 75 | 
+ | 
  int rcut_given ;      /* Whether rcut was given.  */ | 
| 76 | 
  | 
  int zoffset_given ;   /* Whether zoffset was given.  */ | 
| 77 | 
  | 
  int sele1_given ;     /* Whether sele1 was given.  */ | 
| 78 | 
  | 
  int sele2_given ;     /* Whether sele2 was given.  */ | 
| 81 | 
  | 
  int molname_given ;   /* Whether molname was given.  */ | 
| 82 | 
  | 
  int begin_given ;     /* Whether begin was given.  */ | 
| 83 | 
  | 
  int end_given ;       /* Whether end was given.  */ | 
| 84 | 
+ | 
  int bo_given ;        /* Whether bo was given.  */ | 
| 85 | 
  | 
  int gofr_given ;      /* Whether gofr was given.  */ | 
| 86 | 
  | 
  int r_theta_given ;   /* Whether r_theta was given.  */ | 
| 87 | 
  | 
  int r_omega_given ;   /* Whether r_omega was given.  */ | 
| 88 | 
  | 
  int theta_omega_given ;       /* Whether theta_omega was given.  */ | 
| 89 | 
  | 
  int gxyz_given ;      /* Whether gxyz was given.  */ | 
| 90 | 
  | 
  int p2_given ;        /* Whether p2 was given.  */ | 
| 91 | 
+ | 
  int rp2_given ;       /* Whether rp2 was given.  */ | 
| 92 | 
  | 
  int scd_given ;       /* Whether scd was given.  */ | 
| 93 | 
  | 
  int density_given ;   /* Whether density was given.  */ | 
| 94 | 
  | 
  int slab_density_given ;      /* Whether slab_density was given.  */ | 
| 95 | 
+ | 
  int hxy_given ;       /* Whether hxy was given.  */ | 
| 96 | 
  | 
 | 
| 97 | 
  | 
  int staticProps_group_counter; /* counter for group staticProps */ | 
| 98 | 
  | 
} ; |