--- trunk/src/applications/staticProps/StaticPropsCmd.h	2006/05/12 21:34:43	955
+++ trunk/src/applications/staticProps/StaticPropsCmd.h	2006/09/19 21:14:11	1039
@@ -32,14 +32,18 @@ struct gengetopt_args_info
   char * step_orig;	/* process every n frame original value given at command line.  */
   int nrbins_arg;	/* number of bins for distance (default='100').  */
   char * nrbins_orig;	/* number of bins for distance original value given at command line.  */
-  int nbins_x_arg;  /* number of bins in x axis. */
+  int nbins_x_arg;	/* number of bins in x axis (default='100').  */
   char * nbins_x_orig;	/* number of bins in x axis original value given at command line.  */
-  int nbins_y_arg; /* number of bins in y axis. */
+  int nbins_y_arg;	/* number of bins in y axis (default='100').  */
   char * nbins_y_orig;	/* number of bins in y axis original value given at command line.  */
   int nanglebins_arg;	/* number of bins for cos(angle) (default='50').  */
   char * nanglebins_orig;	/* number of bins for cos(angle) original value given at command line.  */
   double length_arg;	/* maximum length (Defaults to 1/2 smallest length of first frame).  */
   char * length_orig;	/* maximum length (Defaults to 1/2 smallest length of first frame) original value given at command line.  */
+  int LegendreL_arg;	/* Order of Legendre Polynomial (used for Bond Order calculations).  */
+  char * LegendreL_orig;	/* Order of Legendre Polynomial (used for Bond Order calculations) original value given at command line.  */
+  double rcut_arg;	/* cutoff radius (rcut).  */
+  char * rcut_orig;	/* cutoff radius (rcut) original value given at command line.  */
   double zoffset_arg;	/* Where to set the zero for the slab_density calculation (default='0').  */
   char * zoffset_orig;	/* Where to set the zero for the slab_density calculation original value given at command line.  */
   char * sele1_arg;	/* select the first stuntdouble set.  */
@@ -52,8 +56,8 @@ struct gengetopt_args_info
   char * refsele_orig;	/* select reference (use and only use with --gxyz) original value given at command line.  */
   char * molname_arg;	/* molecule name.  */
   char * molname_orig;	/* molecule name original value given at command line.  */
-  int begin_arg;	/* begin interanl index.  */
-  char * begin_orig;	/* begin interanl index original value given at command line.  */
+  int begin_arg;	/* begin internal index.  */
+  char * begin_orig;	/* begin internal index original value given at command line.  */
   int end_arg;	/* end internal index.  */
   char * end_orig;	/* end internal index original value given at command line.  */
   
@@ -62,11 +66,13 @@ struct gengetopt_args_info
   int input_given ;	/* Whether input was given.  */
   int output_given ;	/* Whether output was given.  */
   int step_given ;	/* Whether step was given.  */
-  int nbins_x_given;  /*  Whether nbins_x was given */
-  int nbins_y_given; /* Whether nbins_y was given */
   int nrbins_given ;	/* Whether nrbins was given.  */
+  int nbins_x_given ;	/* Whether nbins_x was given.  */
+  int nbins_y_given ;	/* Whether nbins_y was given.  */
   int nanglebins_given ;	/* Whether nanglebins was given.  */
   int length_given ;	/* Whether length was given.  */
+  int LegendreL_given ;	/* Whether LegendreL was given.  */
+  int rcut_given ;	/* Whether rcut was given.  */
   int zoffset_given ;	/* Whether zoffset was given.  */
   int sele1_given ;	/* Whether sele1 was given.  */
   int sele2_given ;	/* Whether sele2 was given.  */
@@ -75,16 +81,18 @@ struct gengetopt_args_info
   int molname_given ;	/* Whether molname was given.  */
   int begin_given ;	/* Whether begin was given.  */
   int end_given ;	/* Whether end was given.  */
+  int bo_given ;	/* Whether bo was given.  */
   int gofr_given ;	/* Whether gofr was given.  */
   int r_theta_given ;	/* Whether r_theta was given.  */
   int r_omega_given ;	/* Whether r_omega was given.  */
   int theta_omega_given ;	/* Whether theta_omega was given.  */
   int gxyz_given ;	/* Whether gxyz was given.  */
   int p2_given ;	/* Whether p2 was given.  */
+  int rp2_given ;	/* Whether rp2 was given.  */
   int scd_given ;	/* Whether scd was given.  */
   int density_given ;	/* Whether density was given.  */
   int slab_density_given ;	/* Whether slab_density was given.  */
-  int hxy_given;         /*Whether hxy was given. */
+  int hxy_given ;	/* Whether hxy was given.  */
 
   int staticProps_group_counter; /* counter for group staticProps */
 } ;