| 1 | /* | 
| 2 | * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. | 
| 3 | * | 
| 4 | * The University of Notre Dame grants you ("Licensee") a | 
| 5 | * non-exclusive, royalty free, license to use, modify and | 
| 6 | * redistribute this software in source and binary code form, provided | 
| 7 | * that the following conditions are met: | 
| 8 | * | 
| 9 | * 1. Acknowledgement of the program authors must be made in any | 
| 10 | *    publication of scientific results based in part on use of the | 
| 11 | *    program.  An acceptable form of acknowledgement is citation of | 
| 12 | *    the article in which the program was described (Matthew | 
| 13 | *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher | 
| 14 | *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented | 
| 15 | *    Parallel Simulation Engine for Molecular Dynamics," | 
| 16 | *    J. Comput. Chem. 26, pp. 252-271 (2005)) | 
| 17 | * | 
| 18 | * 2. Redistributions of source code must retain the above copyright | 
| 19 | *    notice, this list of conditions and the following disclaimer. | 
| 20 | * | 
| 21 | * 3. Redistributions in binary form must reproduce the above copyright | 
| 22 | *    notice, this list of conditions and the following disclaimer in the | 
| 23 | *    documentation and/or other materials provided with the | 
| 24 | *    distribution. | 
| 25 | * | 
| 26 | * This software is provided "AS IS," without a warranty of any | 
| 27 | * kind. All express or implied conditions, representations and | 
| 28 | * warranties, including any implied warranty of merchantability, | 
| 29 | * fitness for a particular purpose or non-infringement, are hereby | 
| 30 | * excluded.  The University of Notre Dame and its licensors shall not | 
| 31 | * be liable for any damages suffered by licensee as a result of | 
| 32 | * using, modifying or distributing the software or its | 
| 33 | * derivatives. In no event will the University of Notre Dame or its | 
| 34 | * licensors be liable for any lost revenue, profit or data, or for | 
| 35 | * direct, indirect, special, consequential, incidental or punitive | 
| 36 | * damages, however caused and regardless of the theory of liability, | 
| 37 | * arising out of the use of or inability to use software, even if the | 
| 38 | * University of Notre Dame has been advised of the possibility of | 
| 39 | * such damages. | 
| 40 | */ | 
| 41 |  | 
| 42 | #include <functional> | 
| 43 | #include <iterator> | 
| 44 | #include <utility> | 
| 45 |  | 
| 46 | #include "brains/Exclude.hpp" | 
| 47 |  | 
| 48 | namespace oopse { | 
| 49 |  | 
| 50 | int *Exclude::getExcludeList() { | 
| 51 |  | 
| 52 | if (modified_) { | 
| 53 | excludeList_.clear(); | 
| 54 |  | 
| 55 | for (std::set<std::pair<int,int> >::iterator i = excludeSet_.begin();i != excludeSet_.end(); ++i) { | 
| 56 | excludeList_.push_back(i->first + 1); | 
| 57 | excludeList_.push_back(i->second + 1); | 
| 58 | } | 
| 59 | modified_ = false; | 
| 60 | } | 
| 61 |  | 
| 62 | return excludeList_.size() > 0 ? &(excludeList_[0]) : NULL; | 
| 63 | } | 
| 64 |  | 
| 65 | void Exclude::addPair(int i, int j) { | 
| 66 |  | 
| 67 | if (i == j) { | 
| 68 | return; | 
| 69 | } else if (i > j) { | 
| 70 | std::swap(i, j); | 
| 71 | } | 
| 72 |  | 
| 73 | std::set<std::pair<int, int> >::iterator iter = excludeSet_.find(std::make_pair(i, j)); | 
| 74 |  | 
| 75 | if (iter == excludeSet_.end()) { | 
| 76 | excludeSet_.insert(std::make_pair(i, j)); | 
| 77 | modified_ = true; | 
| 78 | } | 
| 79 | } | 
| 80 |  | 
| 81 | void Exclude::removePair(int i, int j) { | 
| 82 |  | 
| 83 | if (i == j) { | 
| 84 | return; | 
| 85 | } else if (i > j) { | 
| 86 | std::swap(i, j); | 
| 87 | } | 
| 88 |  | 
| 89 |  | 
| 90 | std::set<std::pair<int, int> >::iterator iter = excludeSet_.find(std::make_pair(i, j)); | 
| 91 |  | 
| 92 | if (iter != excludeSet_.end()) { | 
| 93 | excludeSet_.erase(iter); | 
| 94 | modified_ = true; | 
| 95 | } | 
| 96 | } | 
| 97 |  | 
| 98 | bool Exclude::hasPair(int i, int j) { | 
| 99 |  | 
| 100 | if (i == j) { | 
| 101 | return false; | 
| 102 | } else if (i > j) { | 
| 103 | std::swap(i, j); | 
| 104 | } | 
| 105 |  | 
| 106 | std::set<std::pair<int, int> >::iterator  iter = excludeSet_.find(std::make_pair(i, j)); | 
| 107 | return iter == excludeSet_.end() ? false : true; | 
| 108 | } | 
| 109 |  | 
| 110 | int Exclude::getSize() { | 
| 111 | return excludeSet_.size(); | 
| 112 | } | 
| 113 |  | 
| 114 | std::ostream& operator <<(std::ostream& o, Exclude& e) { | 
| 115 | std::set<std::pair<int, int> >::iterator i; | 
| 116 |  | 
| 117 | int index; | 
| 118 |  | 
| 119 | index = 0; | 
| 120 |  | 
| 121 | for(i = e.excludeSet_.begin(); i != e.excludeSet_.end(); ++i) { | 
| 122 | o << "exclude[" << index << "] i, j: " << (*i).first << " - " | 
| 123 | << (*i).second << "\n"; | 
| 124 | index++; | 
| 125 | } | 
| 126 |  | 
| 127 | return o; | 
| 128 | } | 
| 129 |  | 
| 130 | } | 
| 131 |  | 
| 132 |  |