| 57 |
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#include "types/CutoffGroupStamp.hpp" |
| 58 |
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#include "types/RigidBodyStamp.hpp" |
| 59 |
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#include "types/TorsionStamp.hpp" |
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+ |
#include "types/InversionStamp.hpp" |
| 61 |
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#include "primitives/Molecule.hpp" |
| 62 |
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namespace oopse { |
| 63 |
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| 68 |
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class MoleculeCreator { |
| 69 |
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public: |
| 70 |
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virtual Molecule* createMolecule(ForceField* ff, MoleculeStamp *molStamp, |
| 71 |
< |
int stampId, int globalIndex, LocalIndexManager* localIndexMan); |
| 71 |
> |
int stampId, int globalIndex, |
| 72 |
> |
LocalIndexManager* localIndexMan); |
| 73 |
|
|
| 74 |
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protected: |
| 75 |
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|
| 76 |
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/** Create an atom by its stamp */ |
| 77 |
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virtual Atom* createAtom(ForceField* ff, Molecule* mol, AtomStamp* stamp, |
| 78 |
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LocalIndexManager* localIndexMan); |
| 77 |
– |
|
| 79 |
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virtual RigidBody* createRigidBody(MoleculeStamp *molStamp, Molecule* mol, |
| 80 |
< |
RigidBodyStamp* rbStamp, LocalIndexManager* localIndexMan); |
| 81 |
< |
|
| 80 |
> |
RigidBodyStamp* rbStamp, |
| 81 |
> |
LocalIndexManager* localIndexMan); |
| 82 |
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virtual Bond* createBond(ForceField* ff, Molecule* mol, BondStamp* stamp); |
| 83 |
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virtual Bend* createBend(ForceField* ff, Molecule* mol, BendStamp* stamp); |
| 84 |
< |
virtual Torsion* createTorsion(ForceField* ff, Molecule* mol, TorsionStamp* stamp); |
| 85 |
< |
virtual CutoffGroup* createCutoffGroup(Molecule* mol, CutoffGroupStamp* stamp); |
| 84 |
> |
virtual Torsion* createTorsion(ForceField* ff, Molecule* mol, |
| 85 |
> |
TorsionStamp* stamp); |
| 86 |
> |
virtual Inversion* createInversion(ForceField* ff, Molecule* mol, |
| 87 |
> |
InversionStamp* stamp); |
| 88 |
> |
virtual CutoffGroup* createCutoffGroup(Molecule* mol, |
| 89 |
> |
CutoffGroupStamp* stamp); |
| 90 |
|
virtual CutoffGroup* createCutoffGroup(Molecule * mol, Atom* atom); |
| 91 |
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virtual void createConstraintPair(Molecule* mol); |
| 92 |
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virtual void createConstraintElem(Molecule* mol); |