| 71 |
|
if (worldRank == 0) { |
| 72 |
|
#endif // is_mpi |
| 73 |
|
|
| 74 |
– |
simParams->initalize(); |
| 74 |
|
set_interface_stamps(stamps, simParams); |
| 75 |
|
|
| 76 |
|
#ifdef IS_MPI |
| 95 |
|
|
| 96 |
|
} |
| 97 |
|
|
| 98 |
< |
SimInfo* SimCreator::createSim(const std::string & mdFileName, bool loadInitCoords) { |
| 98 |
> |
SimInfo* SimCreator::createSim(const std::string & mdFileName, |
| 99 |
> |
bool loadInitCoords) { |
| 100 |
|
|
| 101 |
|
MakeStamps * stamps = new MakeStamps(); |
| 102 |
|
|
| 106 |
|
parseFile(mdFileName, stamps, simParams); |
| 107 |
|
|
| 108 |
|
//create the force field |
| 109 |
< |
ForceField * ff = ForceFieldFactory::getInstance()->createForceField( |
| 110 |
< |
simParams->getForceField()); |
| 109 |
> |
ForceField * ff = ForceFieldFactory::getInstance() |
| 110 |
> |
->createForceField(simParams->getForceField()); |
| 111 |
|
|
| 112 |
|
if (ff == NULL) { |
| 113 |
< |
sprintf(painCave.errMsg, "ForceField Factory can not create %s force field\n", |
| 114 |
< |
simParams->getForceField()); |
| 113 |
> |
sprintf(painCave.errMsg, |
| 114 |
> |
"ForceField Factory can not create %s force field\n", |
| 115 |
> |
simParams->getForceField().c_str()); |
| 116 |
|
painCave.isFatal = 1; |
| 117 |
|
simError(); |
| 118 |
|
} |
| 187 |
|
|
| 188 |
|
void SimCreator::gatherParameters(SimInfo *info, const std::string& mdfile) { |
| 189 |
|
|
| 190 |
< |
//figure out the ouput file names |
| 190 |
> |
//figure out the output file names |
| 191 |
|
std::string prefix; |
| 192 |
|
|
| 193 |
|
#ifdef IS_MPI |
| 603 |
|
//invalid initial coordinate file |
| 604 |
|
sprintf(painCave.errMsg, |
| 605 |
|
"Initial configuration file %s should at least contain one frame\n", |
| 606 |
< |
simParams->getInitialConfig()); |
| 606 |
> |
simParams->getInitialConfig().c_str()); |
| 607 |
|
painCave.isFatal = 1; |
| 608 |
|
simError(); |
| 609 |
|
} |