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root/OpenMD/trunk/src/brains/SimCreator.hpp
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Comparing trunk/src/brains/SimCreator.hpp (file contents):
Revision 1878 by gezelter, Wed Aug 22 02:28:28 2012 UTC vs.
Revision 1879 by gezelter, Sun Jun 16 15:15:42 2013 UTC

# Line 35 | Line 35
35   *                                                                      
36   * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).            
37   * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).          
38 < * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008).          
38 > * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).          
39   * [4]  Kuang & Gezelter,  J. Chem. Phys. 133, 164101 (2010).
40   * [5]  Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
41   */
# Line 44 | Line 44
44   * @file SimCreator.hpp
45   * @author tlin
46   * @date 11/02/2004
47 * @time 12:126am
47   * @version 1.0
48   */
49  
# Line 74 | Line 73 | namespace OpenMD {
73      /**
74       * Setup Simulation
75       * @return a pointer to SimInfo
76 <     * @param mdfile the meta-data file name
76 >     * @param mdFileName the meta-data file name
77 >     * @param loadInitCoords should the initial coordinates be loaded from a file?
78       */
79      SimInfo* createSim(const std::string & mdFileName, bool loadInitCoords = true);
80          
# Line 82 | Line 82 | namespace OpenMD {
82          
83      /**
84       * Parses the meta-data file
85 <     * @param mdfile
86 <     * @return simParams
85 >     * @param mdFileName the meta-data file name
86 >     * @param rawMetaData the raw meta-data stream
87 >     * @param mdFileVersion the version of code used to create the meta-data file
88 >     * @param metaDataStartingLine the starting line of the meta-data block
89 >     * @return a pointer to the simulation parameters in a #Globals object
90       */
91      Globals*  parseFile(std::istream& rawMetaData, const std::string& mdFileName, int mdFileVersion, int metaDataStartingLine);
92  

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