| 35 |  | * | 
| 36 |  | * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). | 
| 37 |  | * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). | 
| 38 | < | * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). | 
| 38 | > | * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008). | 
| 39 |  | * [4]  Kuang & Gezelter,  J. Chem. Phys. 133, 164101 (2010). | 
| 40 |  | * [5]  Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). | 
| 41 |  | */ | 
| 44 |  | * @file SimCreator.hpp | 
| 45 |  | * @author tlin | 
| 46 |  | * @date 11/02/2004 | 
| 47 | – | * @time 12:126am | 
| 47 |  | * @version 1.0 | 
| 48 |  | */ | 
| 49 |  |  | 
| 73 |  | /** | 
| 74 |  | * Setup Simulation | 
| 75 |  | * @return a pointer to SimInfo | 
| 76 | < | * @param mdfile the meta-data file name | 
| 76 | > | * @param mdFileName the meta-data file name | 
| 77 | > | * @param loadInitCoords should the initial coordinates be loaded from a file? | 
| 78 |  | */ | 
| 79 |  | SimInfo* createSim(const std::string & mdFileName, bool loadInitCoords = true); | 
| 80 |  |  | 
| 82 |  |  | 
| 83 |  | /** | 
| 84 |  | * Parses the meta-data file | 
| 85 | < | * @param mdfile | 
| 86 | < | * @return simParams | 
| 85 | > | * @param mdFileName the meta-data file name | 
| 86 | > | * @param rawMetaData the raw meta-data stream | 
| 87 | > | * @param mdFileVersion the version of code used to create the meta-data file | 
| 88 | > | * @param metaDataStartingLine the starting line of the meta-data block | 
| 89 | > | * @return a pointer to the simulation parameters in a #Globals object | 
| 90 |  | */ | 
| 91 |  | Globals*  parseFile(std::istream& rawMetaData, const std::string& mdFileName, int mdFileVersion, int metaDataStartingLine); | 
| 92 |  |  |