| 50 |  | #ifndef BRAINS_SIMCREATOR_HPP | 
| 51 |  | #define BRAINS_SIMCREATOR_HPP | 
| 52 |  |  | 
| 53 | < |  | 
| 53 | > | #include <iostream> | 
| 54 |  | #include "primitives/Molecule.hpp" | 
| 55 |  | #include "brains/SimInfo.hpp" | 
| 56 |  | #include "io/Globals.hpp" | 
| 82 |  | * @param mdfile | 
| 83 |  | * @return simParams | 
| 84 |  | */ | 
| 85 | < | Globals*  parseFile(const std::string mdFileName); | 
| 85 | > | Globals*  parseFile(std::istream& rawMetaData, const std::string& mdFileName, int metaDataStartingLine); | 
| 86 |  |  | 
| 87 |  |  | 
| 88 |  | /** create the molecules belong to current processor*/ | 
| 105 |  | void divideMolecules(SimInfo* info); | 
| 106 |  |  | 
| 107 |  | /** Load initial coordinates */ | 
| 108 | < | void loadCoordinates(SimInfo* info); | 
| 108 | > | void loadCoordinates(SimInfo* info, const std::string& mdFileName); | 
| 109 |  |  | 
| 110 |  | std::string mdFileName_;  //save the meta-data file name which may be used later | 
| 111 |  | }; |