| 754 |  | return maxCutoffRadius; | 
| 755 |  | } | 
| 756 |  |  | 
| 757 | < | void SimInfo::setupCutoff() { | 
| 758 | < | double rcut_;  //cutoff radius | 
| 759 | < | double rsw_; //switching radius | 
| 757 | > | void SimInfo::getCutoff(double& rcut, double& rsw) { | 
| 758 |  |  | 
| 759 |  | if (fInfo_.SIM_uses_Charges | fInfo_.SIM_uses_Dipoles | fInfo_.SIM_uses_RF) { | 
| 760 |  |  | 
| 765 |  | "\tfor the cutoffRadius.\n"); | 
| 766 |  | painCave.isFatal = 0; | 
| 767 |  | simError(); | 
| 768 | < | rcut_ = 15.0; | 
| 768 | > | rcut = 15.0; | 
| 769 |  | } else{ | 
| 770 | < | rcut_ = simParams_->getRcut(); | 
| 770 | > | rcut = simParams_->getRcut(); | 
| 771 |  | } | 
| 772 |  |  | 
| 773 |  | if (!simParams_->haveRsw()){ | 
| 777 |  | "\t0.95 * cutoffRadius for the switchingRadius\n"); | 
| 778 |  | painCave.isFatal = 0; | 
| 779 |  | simError(); | 
| 780 | < | rsw_ = 0.95 * rcut_; | 
| 780 | > | rsw = 0.95 * rcut; | 
| 781 |  | } else{ | 
| 782 | < | rsw_ = simParams_->getRsw(); | 
| 782 | > | rsw = simParams_->getRsw(); | 
| 783 |  | } | 
| 784 |  |  | 
| 785 |  | } else { | 
| 787 |  | //meta-data file, the maximum cutoff radius calculated from forcefiled will be used | 
| 788 |  |  | 
| 789 |  | if (simParams_->haveRcut()) { | 
| 790 | < | rcut_ = simParams_->getRcut(); | 
| 790 | > | rcut = simParams_->getRcut(); | 
| 791 |  | } else { | 
| 792 |  | //set cutoff radius to the maximum cutoff radius based on atom types in the whole system | 
| 793 | < | rcut_ = calcMaxCutoffRadius(); | 
| 793 | > | rcut = calcMaxCutoffRadius(); | 
| 794 |  | } | 
| 795 |  |  | 
| 796 |  | if (simParams_->haveRsw()) { | 
| 797 | < | rsw_  = simParams_->getRsw(); | 
| 797 | > | rsw  = simParams_->getRsw(); | 
| 798 |  | } else { | 
| 799 | < | rsw_ = rcut_; | 
| 799 | > | rsw = rcut; | 
| 800 |  | } | 
| 801 |  |  | 
| 802 |  | } | 
| 803 | < |  | 
| 803 | > | } | 
| 804 | > |  | 
| 805 | > | void SimInfo::setupCutoff() { | 
| 806 | > | getCutoff(rcut_, rsw_); | 
| 807 |  | double rnblist = rcut_ + 1; // skin of neighbor list | 
| 808 |  |  | 
| 809 |  | //Pass these cutoff radius etc. to fortran. This function should be called once and only once | 
| 835 |  | } | 
| 836 |  |  | 
| 837 |  | void SimInfo::setSnapshotManager(SnapshotManager* sman) { | 
| 838 | + | if (sman_ == sman_) { | 
| 839 | + | return; | 
| 840 | + | } | 
| 841 | + |  | 
| 842 | + | delete sman_; | 
| 843 |  | sman_ = sman; | 
| 844 |  |  | 
| 845 |  | Molecule* mol; |