| 88 |
|
|
| 89 |
|
|
| 90 |
|
int usePBC; // whether we use periodic boundry conditions. |
| 91 |
< |
int useLJ; |
| 92 |
< |
int useSticky; |
| 91 |
> |
int useDirectionalAtoms; |
| 92 |
> |
int useLennardJones; |
| 93 |
> |
int useElectrostatics; |
| 94 |
|
int useCharges; |
| 95 |
|
int useDipoles; |
| 96 |
< |
int useReactionField; |
| 97 |
< |
int useGB; |
| 96 |
> |
int useSticky; |
| 97 |
> |
int useGayBerne; |
| 98 |
|
int useEAM; |
| 99 |
+ |
int useShapes; |
| 100 |
+ |
int useFLARB; |
| 101 |
+ |
int useReactionField; |
| 102 |
|
bool haveCutoffGroups; |
| 103 |
|
bool useInitXSstate; |
| 104 |
|
double orthoTolerance; |
| 131 |
|
string finalName; // the name of the eor file to be written |
| 132 |
|
string sampleName; // the name of the dump file to be written |
| 133 |
|
string statusName; // the name of the stat file to be written |
| 134 |
+ |
string zAngleName; // the name of the ang file to be written |
| 135 |
|
|
| 136 |
|
int seed; //seed for random number generator |
| 137 |
|
|