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root/OpenMD/trunk/src/brains/Snapshot.hpp
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Comparing trunk/src/brains/Snapshot.hpp (file contents):
Revision 963 by tim, Wed May 17 21:51:42 2006 UTC vs.
Revision 1277 by gezelter, Mon Jul 14 12:35:58 2008 UTC

# Line 56 | Line 56
56   #include "brains/Stats.hpp"
57   #include "UseTheForce/DarkSide/simulation_interface.h"
58  
59 +
60   namespace oopse{
61  
62    /**
# Line 68 | Line 69 | namespace oopse{
69    class Snapshot {
70    public:
71              
72 <    Snapshot(int nAtoms, int nRigidbodies) : atomData(nAtoms), rigidbodyData(nRigidbodies),
73 <                                             currentTime_(0), orthoRhombic_(0), chi_(0.0), integralOfChiDt_(0.0), eta_(0.0), id_(-1) {
72 >    Snapshot(int nAtoms, int nRigidbodies) : atomData(nAtoms),
73 >                                             rigidbodyData(nRigidbodies),
74 >                                             currentTime_(0),
75 >                                             orthoTolerance_(1e-6),
76 >                                             orthoRhombic_(0),
77 >                                             chi_(0.0),
78 >                                             integralOfChiDt_(0.0),
79 >                                             eta_(0.0), id_(-1),
80 >                                             hasCOM_(false) {
81  
82      }
83  
84      Snapshot(int nAtoms, int nRigidbodies, int storageLayout)
85 <      : atomData(nAtoms, storageLayout), rigidbodyData(nRigidbodies, storageLayout),
86 <        currentTime_(0), orthoRhombic_(0), chi_(0.0), integralOfChiDt_(0.0), eta_(0.0), id_(-1) {
85 >      : atomData(nAtoms, storageLayout),
86 >        rigidbodyData(nRigidbodies, storageLayout),
87 >        currentTime_(0), orthoTolerance_(1e-6), orthoRhombic_(0), chi_(0.0),
88 >        integralOfChiDt_(0.0), eta_(0.0), id_(-1), hasCOM_(false)  {
89  
90        }
91              
# Line 122 | Line 132 | namespace oopse{
132  
133      /** Wrapping the vector according to periodic boundary condition*/
134      void wrapVector(Vector3d& v);
135 <
135 >    Vector3d getCOM();
136 >    Vector3d getCOMvel();
137 >    Vector3d getCOMw();
138              
139      RealType getTime() {
140        return currentTime_;
# Line 154 | Line 166 | namespace oopse{
166        integralOfChiDt_ = integralOfChiDt;
167      }
168              
169 +
170 +    void setOrthoTolerance(RealType orthoTolerance) {
171 +      orthoTolerance_ = orthoTolerance;
172 +    }
173 +
174      Mat3x3d getEta() {
175        return eta_;
176      }
# Line 161 | Line 178 | namespace oopse{
178      void setEta(const Mat3x3d& eta) {
179        eta_ = eta;
180      }
181 <            
181 >
182 >    bool hasCOM() {
183 >      return hasCOM_;
184 >    }
185 >
186 >    void setCOMprops(const Vector3d& COM, const Vector3d& COMvel, const Vector3d& COMw) {
187 >      COM_ = COM;
188 >      COMvel_ = COMvel;
189 >      COMw_ = COMw;
190 >      hasCOM_ = true;
191 >    }
192 >                  
193      DataStorage atomData;
194      DataStorage rigidbodyData;
195      Stats statData;
# Line 171 | Line 199 | namespace oopse{
199  
200      Mat3x3d hmat_;
201      Mat3x3d invHmat_;
202 +    RealType orthoTolerance_;
203      int orthoRhombic_;
204  
205      RealType chi_;
206      RealType integralOfChiDt_;
207      Mat3x3d eta_;
208 +    Vector3d COM_;
209 +    Vector3d COMvel_;
210 +    Vector3d COMw_;
211 +    bool hasCOM_;
212              
213      int id_; /**< identification number of the snapshot */
214    };

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