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Comparing trunk/src/brains/Stats.hpp (file contents):
Revision 998 by chrisfen, Mon Jul 3 13:18:43 2006 UTC vs.
Revision 1390 by gezelter, Wed Nov 25 20:02:06 2009 UTC

# Line 6 | Line 6
6   * redistribute this software in source and binary code form, provided
7   * that the following conditions are met:
8   *
9 < * 1. Acknowledgement of the program authors must be made in any
10 < *    publication of scientific results based in part on use of the
11 < *    program.  An acceptable form of acknowledgement is citation of
12 < *    the article in which the program was described (Matthew
13 < *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14 < *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15 < *    Parallel Simulation Engine for Molecular Dynamics,"
16 < *    J. Comput. Chem. 26, pp. 252-271 (2005))
17 < *
18 < * 2. Redistributions of source code must retain the above copyright
9 > * 1. Redistributions of source code must retain the above copyright
10   *    notice, this list of conditions and the following disclaimer.
11   *
12 < * 3. Redistributions in binary form must reproduce the above copyright
12 > * 2. Redistributions in binary form must reproduce the above copyright
13   *    notice, this list of conditions and the following disclaimer in the
14   *    documentation and/or other materials provided with the
15   *    distribution.
# Line 37 | Line 28
28   * arising out of the use of or inability to use software, even if the
29   * University of Notre Dame has been advised of the possibility of
30   * such damages.
31 + *
32 + * SUPPORT OPEN SCIENCE!  If you use OpenMD or its source code in your
33 + * research, please cite the appropriate papers when you publish your
34 + * work.  Good starting points are:
35 + *                                                                      
36 + * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).            
37 + * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).          
38 + * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008).          
39 + * [4]  Vardeman & Gezelter, in progress (2009).                        
40   */
41    
42   /**
# Line 54 | Line 54
54   #include <map>
55  
56   #include "math/SquareMatrix3.hpp"
57 < namespace oopse {
57 > namespace OpenMD {
58  
59    /**
60     * @class Stats Stats.hpp "brains/Stats.hpp"
# Line 70 | Line 70 | namespace oopse {
70        TEMPERATURE,
71        PRESSURE,
72        VOLUME,
73 +      HULLVOLUME,
74 +      GYRVOLUME,
75        CONSERVED_QUANTITY,            
76        TRANSLATIONAL_KINETIC,
77        ROTATIONAL_KINETIC,
# Line 80 | Line 82 | namespace oopse {
82        BOND_POTENTIAL,
83        BEND_POTENTIAL,
84        DIHEDRAL_POTENTIAL,
85 <      IMPROPER_POTENTIAL,
85 >      INVERSION_POTENTIAL,
86        VRAW,
87        VHARM,
88 <      PRESSURE_TENSOR_X,
89 <      PRESSURE_TENSOR_Y,
90 <      PRESSURE_TENSOR_Z,  
88 >      PRESSURE_TENSOR_XX,
89 >      PRESSURE_TENSOR_XY,
90 >      PRESSURE_TENSOR_XZ,
91 >      PRESSURE_TENSOR_YX,
92 >      PRESSURE_TENSOR_YY,
93 >      PRESSURE_TENSOR_YZ,
94 >      PRESSURE_TENSOR_ZX,
95 >      PRESSURE_TENSOR_ZY,
96 >      PRESSURE_TENSOR_ZZ,
97        BOX_DIPOLE_X,
98        BOX_DIPOLE_Y,
99        BOX_DIPOLE_Z,
100 +      TAGGED_PAIR_DISTANCE,
101 +      RNEMD_EXCHANGE_TOTAL,
102        ENDINDEX  //internal use
103      };
104  
# Line 135 | Line 145 | namespace oopse {
145  
146  
147  
148 < } //end namespace oopse
148 > } //end namespace OpenMD
149   #endif //BRAINS_STATS_HPP

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