| 1 |  | /* | 
| 2 | < | * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. | 
| 2 | > | * Copyright (c) 2005, 2009 The University of Notre Dame. All Rights Reserved. | 
| 3 |  | * | 
| 4 |  | * The University of Notre Dame grants you ("Licensee") a | 
| 5 |  | * non-exclusive, royalty free, license to use, modify and | 
| 6 |  | * redistribute this software in source and binary code form, provided | 
| 7 |  | * that the following conditions are met: | 
| 8 |  | * | 
| 9 | < | * 1. Acknowledgement of the program authors must be made in any | 
| 10 | < | *    publication of scientific results based in part on use of the | 
| 11 | < | *    program.  An acceptable form of acknowledgement is citation of | 
| 12 | < | *    the article in which the program was described (Matthew | 
| 13 | < | *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher | 
| 14 | < | *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented | 
| 15 | < | *    Parallel Simulation Engine for Molecular Dynamics," | 
| 16 | < | *    J. Comput. Chem. 26, pp. 252-271 (2005)) | 
| 17 | < | * | 
| 18 | < | * 2. Redistributions of source code must retain the above copyright | 
| 9 | > | * 1. Redistributions of source code must retain the above copyright | 
| 10 |  | *    notice, this list of conditions and the following disclaimer. | 
| 11 |  | * | 
| 12 | < | * 3. Redistributions in binary form must reproduce the above copyright | 
| 12 | > | * 2. Redistributions in binary form must reproduce the above copyright | 
| 13 |  | *    notice, this list of conditions and the following disclaimer in the | 
| 14 |  | *    documentation and/or other materials provided with the | 
| 15 |  | *    distribution. | 
| 28 |  | * arising out of the use of or inability to use software, even if the | 
| 29 |  | * University of Notre Dame has been advised of the possibility of | 
| 30 |  | * such damages. | 
| 31 | + | * | 
| 32 | + | * SUPPORT OPEN SCIENCE!  If you use OpenMD or its source code in your | 
| 33 | + | * research, please cite the appropriate papers when you publish your | 
| 34 | + | * work.  Good starting points are: | 
| 35 | + | * | 
| 36 | + | * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). | 
| 37 | + | * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). | 
| 38 | + | * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). | 
| 39 | + | * [4]  Vardeman & Gezelter, in progress (2009). | 
| 40 |  | */ | 
| 41 |  |  | 
| 42 |  | /** | 
| 54 |  | #include <map> | 
| 55 |  |  | 
| 56 |  | #include "math/SquareMatrix3.hpp" | 
| 57 | < | namespace oopse { | 
| 57 | > | namespace OpenMD { | 
| 58 |  |  | 
| 59 |  | /** | 
| 60 |  | * @class Stats Stats.hpp "brains/Stats.hpp" | 
| 70 |  | TEMPERATURE, | 
| 71 |  | PRESSURE, | 
| 72 |  | VOLUME, | 
| 73 | + | HULLVOLUME, | 
| 74 | + | GYRVOLUME, | 
| 75 |  | CONSERVED_QUANTITY, | 
| 76 |  | TRANSLATIONAL_KINETIC, | 
| 77 |  | ROTATIONAL_KINETIC, | 
| 82 |  | BOND_POTENTIAL, | 
| 83 |  | BEND_POTENTIAL, | 
| 84 |  | DIHEDRAL_POTENTIAL, | 
| 85 | < | IMPROPER_POTENTIAL, | 
| 85 | > | INVERSION_POTENTIAL, | 
| 86 |  | VRAW, | 
| 87 |  | VHARM, | 
| 88 |  | PRESSURE_TENSOR_XX, | 
| 97 |  | BOX_DIPOLE_X, | 
| 98 |  | BOX_DIPOLE_Y, | 
| 99 |  | BOX_DIPOLE_Z, | 
| 100 | + | TAGGED_PAIR_DISTANCE, | 
| 101 | + | RNEMD_EXCHANGE_TOTAL, | 
| 102 | + | SHADOWH, | 
| 103 |  | ENDINDEX  //internal use | 
| 104 |  | }; | 
| 105 |  |  | 
| 146 |  |  | 
| 147 |  |  | 
| 148 |  |  | 
| 149 | < | } //end namespace oopse | 
| 149 | > | } //end namespace OpenMD | 
| 150 |  | #endif //BRAINS_STATS_HPP |