| 86 |
|
void NPAT::getPosScale(const Vector3d& pos, const Vector3d& COM, int index, Vector3d& sc) { |
| 87 |
|
|
| 88 |
|
/**@todo */ |
| 89 |
< |
Vector3d rj = (oldPos[index] + pos)/2.0 -COM; |
| 89 |
> |
Vector3d rj = (oldPos[index] + pos)/(RealType)2.0 -COM; |
| 90 |
|
sc = eta * rj; |
| 91 |
|
} |
| 92 |
|
|
| 110 |
|
|
| 111 |
|
bool NPAT::etaConverged() { |
| 112 |
|
int i; |
| 113 |
< |
double diffEta, sumEta; |
| 113 |
> |
RealType diffEta, sumEta; |
| 114 |
|
|
| 115 |
|
sumEta = 0; |
| 116 |
|
for(i = 0; i < 3; i++) { |
| 122 |
|
return ( diffEta <= etaTolerance ); |
| 123 |
|
} |
| 124 |
|
|
| 125 |
< |
double NPAT::calcConservedQuantity(){ |
| 125 |
> |
RealType NPAT::calcConservedQuantity(){ |
| 126 |
|
|
| 127 |
|
chi= currentSnapshot_->getChi(); |
| 128 |
|
integralOfChidt = currentSnapshot_->getIntegralOfChiDt(); |
| 138 |
|
// of freedom). |
| 139 |
|
fkBT = info_->getNdf()*OOPSEConstant::kB *targetTemp; |
| 140 |
|
|
| 141 |
< |
double conservedQuantity; |
| 142 |
< |
double totalEnergy; |
| 143 |
< |
double thermostat_kinetic; |
| 144 |
< |
double thermostat_potential; |
| 145 |
< |
double barostat_kinetic; |
| 146 |
< |
double barostat_potential; |
| 147 |
< |
double trEta; |
| 141 |
> |
RealType conservedQuantity; |
| 142 |
> |
RealType totalEnergy; |
| 143 |
> |
RealType thermostat_kinetic; |
| 144 |
> |
RealType thermostat_potential; |
| 145 |
> |
RealType barostat_kinetic; |
| 146 |
> |
RealType barostat_potential; |
| 147 |
> |
RealType trEta; |
| 148 |
|
|
| 149 |
|
totalEnergy = thermo.getTotalE(); |
| 150 |
|
|
| 152 |
|
|
| 153 |
|
thermostat_potential = fkBT* integralOfChidt / OOPSEConstant::energyConvert; |
| 154 |
|
|
| 155 |
< |
SquareMatrix<double, 3> tmp = eta.transpose() * eta; |
| 155 |
> |
SquareMatrix<RealType, 3> tmp = eta.transpose() * eta; |
| 156 |
|
trEta = tmp.trace(); |
| 157 |
|
|
| 158 |
|
barostat_kinetic = NkBT * tb2 * trEta /(2.0 * OOPSEConstant::energyConvert); |