| 1 |  | #include <math.h> | 
| 2 |  |  | 
| 3 | < | #include "Atom.hpp" | 
| 4 | < | #include "SRI.hpp" | 
| 5 | < | #include "AbstractClasses.hpp" | 
| 6 | < | #include "SimInfo.hpp" | 
| 7 | < | #include "ForceFields.hpp" | 
| 8 | < | #include "Thermo.hpp" | 
| 9 | < | #include "ReadWrite.hpp" | 
| 10 | < | #include "Integrator.hpp" | 
| 11 | < | #include "simError.h" | 
| 3 | > | #include "primitives/Atom.hpp" | 
| 4 | > | #include "primitives/SRI.hpp" | 
| 5 | > | #include "primitives/AbstractClasses.hpp" | 
| 6 | > | #include "brains/SimInfo.hpp" | 
| 7 | > | #include "UseTheForce/ForceFields.hpp" | 
| 8 | > | #include "brains/Thermo.hpp" | 
| 9 | > | #include "io/ReadWrite.hpp" | 
| 10 | > | #include "integrators/Integrator.hpp" | 
| 11 | > | #include "utils/simError.h" | 
| 12 |  |  | 
| 13 |  |  | 
| 14 |  | // Basic thermostating via Hoover, Phys.Rev.A, 1985, Vol. 31 (5) 1695-1697 |