[ViewVC] Log of: OpenMD/trunk/src/io

Revision 514 - Directory Listing - [select for diffs]
Modified Thu Apr 21 14:12:19 2005 UTC (21 years ago) by chrisfen
Diff to previous 512

Shapes is limping along with a array bounds overwrite (I think...). At least the parser loads the forcefield fine...

Revision 512 - Directory Listing - [selected]
Modified Mon Apr 18 03:50:23 2005 UTC (21 years ago) by chrisfen
Diff to previous 507

Working on the shapes parser...

Revision 507 - Directory Listing - [select for diffs]
Modified Fri Apr 15 22:04:00 2005 UTC (21 years ago) by gezelter
Diff to previous 498 , to selected 512

xemacs has been drafted to perform our indentation services

Revision 498 - Directory Listing - [select for diffs]
Modified Thu Apr 14 15:20:15 2005 UTC (21 years ago) by tim
Diff to previous 490 , to selected 512

fix one more warning message in make_nodes

Revision 490 - Directory Listing - [select for diffs]
Modified Wed Apr 13 18:41:17 2005 UTC (21 years ago) by tim
Diff to previous 468 , to selected 512

more memory leak are fixed

Revision 468 - Directory Listing - [select for diffs]
Modified Mon Apr 11 21:58:05 2005 UTC (21 years ago) by tim
Diff to previous 453 , to selected 512

avoid multiple inherit in basic_ifstrstream

Revision 453 - Directory Listing - [select for diffs]
Modified Wed Apr 6 23:59:59 2005 UTC (21 years ago) by tim
Diff to previous 436 , to selected 512

reinitialize buffer_stack_ptr in BASS parser

Revision 436 - Directory Listing - [select for diffs]
Modified Fri Mar 11 17:50:11 2005 UTC (21 years, 1 month ago) by tim
Diff to previous 431 , to selected 512

fix a typo in MultipoleAtomTypesSectionParser

Revision 431 - Directory Listing - [select for diffs]
Modified Fri Mar 11 00:43:19 2005 UTC (21 years, 1 month ago) by chrisfen
Diff to previous 426 , to selected 512

fixed a bug in MPI restraints

Revision 426 - Directory Listing - [select for diffs]
Modified Thu Mar 10 20:40:56 2005 UTC (21 years, 1 month ago) by gezelter
Diff to previous 425 , to selected 512

LinkedList removal project starts now

Revision 425 - Directory Listing - [select for diffs]
Modified Thu Mar 10 20:28:17 2005 UTC (21 years, 1 month ago) by tim
Diff to previous 423 , to selected 512

using map to replace link list

Revision 423 - Directory Listing - [select for diffs]
Modified Thu Mar 10 19:11:02 2005 UTC (21 years, 1 month ago) by chrisfen
Diff to previous 418 , to selected 512

Oops...  MPI now builds...

Revision 418 - Directory Listing - [select for diffs]
Modified Thu Mar 10 16:14:07 2005 UTC (21 years, 1 month ago) by tim
Diff to previous 417 , to selected 512

minor change

Revision 417 - Directory Listing - [select for diffs]
Modified Thu Mar 10 15:10:24 2005 UTC (21 years, 1 month ago) by chrisfen
Diff to previous 414 , to selected 512

First commit of the new restraints code

Revision 414 - Directory Listing - [select for diffs]
Modified Wed Mar 9 17:58:33 2005 UTC (21 years, 1 month ago) by tim
Diff to previous 413 , to selected 512

fix a bug in SectionParser (lineNo is not updated)

Revision 413 - Directory Listing - [select for diffs]
Modified Wed Mar 9 17:30:29 2005 UTC (21 years, 1 month ago) by tim
Diff to previous 404 , to selected 512

adding IndexFinder which is used to select the molecules; Seperate ElectrostaticAtomTypesSectionParser into
ChargeAtomTypesSectionParser and MultipoleAtomTypesSectionParser;remove print dipole option from Dump2XYZ;

Revision 404 - Directory Listing - [select for diffs]
Modified Tue Mar 8 21:07:14 2005 UTC (21 years, 1 month ago) by gezelter
Diff to previous 398 , to selected 512

Dunno

Revision 398 - Directory Listing - [select for diffs]
Modified Mon Mar 7 22:39:33 2005 UTC (21 years, 1 month ago) by tim
Diff to previous 395 , to selected 512

Fixing a bug in BitSet.cpp

Revision 395 - Directory Listing - [select for diffs]
Modified Thu Mar 3 14:40:20 2005 UTC (21 years, 1 month ago) by tim
Diff to previous 381 , to selected 512

avoid using const char*(hope can fixed the missing atom type problem)

Revision 381 - Directory Listing - [select for diffs]
Modified Tue Mar 1 14:45:45 2005 UTC (21 years, 1 month ago) by tim
Diff to previous 378 , to selected 512

adding MersenneTwister random number generator

Revision 378 - Directory Listing - [select for diffs]
Modified Fri Feb 25 21:22:00 2005 UTC (21 years, 1 month ago) by tim
Diff to previous 376 , to selected 512

adding soft potential to LJ Module

Revision 376 - Directory Listing - [select for diffs]
Modified Thu Feb 24 20:55:07 2005 UTC (21 years, 1 month ago) by tim
Diff to previous 369 , to selected 512

adding basic_teebuf which can operate on multiple stream simutaneously.

Revision 369 - Directory Listing - [select for diffs]
Modified Fri Feb 18 23:07:32 2005 UTC (21 years, 2 months ago) by tim
Diff to previous 324 , to selected 512

adding LipidTransVisitor, GofXyz is working now

Revision 324 - Directory Listing - [select for diffs]
Modified Sun Feb 13 19:10:25 2005 UTC (21 years, 2 months ago) by tim
Diff to previous 318 , to selected 512

dynamicProps get built

Revision 318 - Directory Listing - [select for diffs]
Modified Sun Feb 13 06:57:48 2005 UTC (21 years, 2 months ago) by tim
Diff to previous 274 , to selected 512

adding dynamicProps

Revision 274 - Directory Listing - [select for diffs]
Modified Tue Jan 25 21:59:18 2005 UTC (21 years, 2 months ago) by tim
Diff to previous 273 , to selected 512

fix a bug in SimInfo, use number of cutoff stamp as counter to loop over rigidbody stamp

Revision 273 - Directory Listing - [select for diffs]
Modified Tue Jan 25 17:45:23 2005 UTC (21 years, 2 months ago) by tim
Diff to previous 267 , to selected 512

(1) complete section parser's error message
(2) add GhostTorsion
(3) accumulate inertial tensor from the directional atoms before calculate rigidbody's inertial tensor

Revision 267 - Directory Listing - [select for diffs]
Modified Fri Jan 14 21:13:24 2005 UTC (21 years, 3 months ago) by gezelter
Diff to previous 261 , to selected 512

moved Package variable into subdirectory makefiles to speed up
the building process

Revision 261 - Directory Listing - [select for diffs]
Modified Fri Jan 14 16:49:46 2005 UTC (21 years, 3 months ago) by tim
Diff to previous 253 , to selected 512

using c library to do conversion instead of using iostream due to a bug in
libstdc++(GCC 3.2)

Revision 253 - Directory Listing - [select for diffs]
Modified Thu Jan 13 19:40:37 2005 UTC (21 years, 3 months ago) by tim
Diff to previous 251 , to selected 512

port to SGI platform

Revision 251 - Directory Listing - [select for diffs]
Modified Wed Jan 12 23:24:55 2005 UTC (21 years, 3 months ago) by tim
Diff to previous 246 , to selected 512

remove useless debug info

Revision 246 - Directory Listing - [select for diffs]
Modified Wed Jan 12 22:41:40 2005 UTC (21 years, 3 months ago) by gezelter
Diff to previous 225 , to selected 512

merging new_design branch into OOPSE-2.0

Revision 225 - Directory Listing - [select for diffs]
Modified Wed Nov 24 18:06:34 2004 UTC (21 years, 4 months ago) by chrisfen
Diff to previous 221 , to selected 512

improved restraints - mpi should work fine

Revision 221 - Directory Listing - [select for diffs]
Modified Tue Nov 23 22:48:31 2004 UTC (21 years, 4 months ago) by chrisfen
Diff to previous 132 , to selected 512

Improvements to restraints

Revision 132 - Directory Listing - [select for diffs]
Modified Thu Oct 21 16:22:01 2004 UTC (21 years, 5 months ago) by tim
Diff to previous 99 , to selected 512

replace old GebericData with  new GenericData

Revision 99 - Directory Listing - [select for diffs]
Modified Mon Oct 18 17:07:27 2004 UTC (21 years, 6 months ago) by tim
Diff to previous 90 , to selected 512

fix some bugs in Quaternion class

Revision 90 - Directory Listing - [select for diffs]
Modified Fri Oct 15 21:10:50 2004 UTC (21 years, 6 months ago) by tim
Diff to previous 89 , to selected 512

fix a bunch of bugs

Revision 89 - Directory Listing - [select for diffs]
Modified Fri Oct 15 20:42:25 2004 UTC (21 years, 6 months ago) by tim
Diff to previous 88 , to selected 512

change const_cast to statc_const

Revision 88 - Directory Listing - [select for diffs]
Modified Fri Oct 15 20:35:01 2004 UTC (21 years, 6 months ago) by tim
Diff to previous 84 , to selected 512

fix a bug in basic_ifstrstream.hpp

Revision 84 - Directory Listing - [select for diffs]
Modified Fri Oct 15 18:20:44 2004 UTC (21 years, 6 months ago) by tim
Diff to previous 79 , to selected 512

fix include

Revision 79 - Directory Listing - [select for diffs]
Modified Fri Oct 15 15:20:14 2004 UTC (21 years, 6 months ago) by tim
Diff to previous 77 , to selected 512

add checkFilename Option

Revision 77 - Directory Listing - [select for diffs]
Modified Fri Oct 15 07:52:47 2004 UTC (21 years, 6 months ago) by tim
Diff to previous 75 , to selected 512

adding basic_ifstrstream

Revision 75 - Directory Listing - [select for diffs]
Modified Thu Oct 14 23:27:31 2004 UTC (21 years, 6 months ago) by tim
Diff to previous 24 , to selected 512

FileReader in progress

Revision 24 - Directory Listing - [select for diffs]
Modified Wed Sep 29 21:55:03 2004 UTC (21 years, 6 months ago) by tim
Diff to previous 14 , to selected 512

define DEV_ROOT as relative path

Revision 14 - Directory Listing - [select for diffs]
Modified Wed Sep 29 14:59:25 2004 UTC (21 years, 6 months ago) by tim
Diff to previous 6 , to selected 512

change Makefile to relative path

Revision 6 - Directory Listing - [select for diffs]
Modified Tue Sep 28 16:14:17 2004 UTC (21 years, 6 months ago) by tim
Diff to previous 3 , to selected 512

add yacc and lex rules

Revision 3 - Directory Listing - [select for diffs]
Modified Fri Sep 24 16:27:58 2004 UTC (21 years, 6 months ago) by tim
Diff to previous 2 , to selected 512

change the #include in source files

Revision 2 - Directory Listing - [select for diffs]
Added Fri Sep 24 04:16:43 2004 UTC (21 years, 6 months ago) by gezelter
Diff to selected 512

Import of OOPSE v. 2.0

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