| 36 |  | * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). | 
| 37 |  | * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). | 
| 38 |  | * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). | 
| 39 | < | * [4]  Vardeman & Gezelter, in progress (2009). | 
| 39 | > | * [4]  Kuang & Gezelter,  J. Chem. Phys. 133, 164101 (2010). | 
| 40 | > | * [5]  Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). | 
| 41 |  | */ | 
| 42 |  |  | 
| 43 |  | /** | 
| 80 |  |  | 
| 81 |  | protected: | 
| 82 |  |  | 
| 83 | < | void scanFile(); | 
| 83 | < |  | 
| 83 | > | void scanFile(); | 
| 84 |  | void readSet(int whichFrame); | 
| 85 | – |  | 
| 85 |  | virtual void parseDumpLine(const std::string&); | 
| 86 | < |  | 
| 86 | > | virtual void parseSiteLine(const std::string&); | 
| 87 |  | virtual void readFrameProperties(std::istream& inputStream); | 
| 88 | < |  | 
| 89 | < | void readStuntDoubles(std::istream& inputStream); | 
| 88 | > | void readStuntDoubles(std::istream& inputStream); | 
| 89 | > | void readSiteData(std::istream& inputStream); | 
| 90 |  |  | 
| 91 |  | SimInfo* info_; | 
| 92 |  |  |