| 43 |
|
#include "primitives/Molecule.hpp" |
| 44 |
|
#include "utils/simError.h" |
| 45 |
|
#include "io/basic_teebuf.hpp" |
| 46 |
+ |
#include "io/gzstream.hpp" |
| 47 |
+ |
#include "io/Globals.hpp" |
| 48 |
+ |
|
| 49 |
|
#ifdef IS_MPI |
| 50 |
|
#include <mpi.h> |
| 51 |
|
#endif //is_mpi |
| 54 |
|
|
| 55 |
|
DumpWriter::DumpWriter(SimInfo* info) |
| 56 |
|
: info_(info), filename_(info->getDumpFileName()), eorFilename_(info->getFinalConfigFileName()){ |
| 57 |
+ |
|
| 58 |
+ |
Globals* simParams = info->getSimParams(); |
| 59 |
+ |
needCompression_ = simParams->getCompressDumpFile(); |
| 60 |
+ |
|
| 61 |
+ |
if (needCompression_) { |
| 62 |
+ |
filename_ += ".gz"; |
| 63 |
+ |
eorFilename_ += ".gz"; |
| 64 |
+ |
} |
| 65 |
+ |
|
| 66 |
|
#ifdef IS_MPI |
| 67 |
|
|
| 68 |
|
if (worldRank == 0) { |
| 69 |
|
#endif // is_mpi |
| 70 |
|
|
| 59 |
– |
dumpFile_.open(filename_.c_str(), std::ios::out | std::ios::trunc); |
| 71 |
|
|
| 72 |
+ |
dumpFile_ = createOStream(filename_); |
| 73 |
+ |
|
| 74 |
|
if (!dumpFile_) { |
| 75 |
|
sprintf(painCave.errMsg, "Could not open \"%s\" for dump output.\n", |
| 76 |
|
filename_.c_str()); |
| 92 |
|
|
| 93 |
|
DumpWriter::DumpWriter(SimInfo* info, const std::string& filename) |
| 94 |
|
: info_(info), filename_(filename){ |
| 95 |
+ |
|
| 96 |
+ |
Globals* simParams = info->getSimParams(); |
| 97 |
+ |
eorFilename_ = filename_.substr(0, filename_.rfind(".")) + ".eor"; |
| 98 |
+ |
|
| 99 |
+ |
needCompression_ = simParams->getCompressDumpFile(); |
| 100 |
+ |
if (needCompression_) { |
| 101 |
+ |
filename_ += ".gz"; |
| 102 |
+ |
eorFilename_ += ".gz"; |
| 103 |
+ |
} |
| 104 |
+ |
|
| 105 |
|
#ifdef IS_MPI |
| 106 |
|
|
| 107 |
|
if (worldRank == 0) { |
| 108 |
|
#endif // is_mpi |
| 109 |
|
|
| 87 |
– |
eorFilename_ = filename_.substr(0, filename_.rfind(".")) + ".eor"; |
| 88 |
– |
dumpFile_.open(filename_.c_str(), std::ios::out | std::ios::trunc); |
| 110 |
|
|
| 111 |
+ |
dumpFile_ = createOStream(filename_); |
| 112 |
+ |
|
| 113 |
|
if (!dumpFile_) { |
| 114 |
|
sprintf(painCave.errMsg, "Could not open \"%s\" for dump output.\n", |
| 115 |
|
filename_.c_str()); |
| 135 |
|
if (worldRank == 0) { |
| 136 |
|
#endif // is_mpi |
| 137 |
|
|
| 138 |
< |
dumpFile_.close(); |
| 138 |
> |
delete dumpFile_; |
| 139 |
|
|
| 140 |
|
#ifdef IS_MPI |
| 141 |
|
|
| 595 |
|
} |
| 596 |
|
|
| 597 |
|
void DumpWriter::writeDump() { |
| 598 |
< |
writeFrame(dumpFile_); |
| 576 |
< |
|
| 598 |
> |
writeFrame(*dumpFile_); |
| 599 |
|
} |
| 600 |
|
|
| 601 |
|
void DumpWriter::writeEor() { |
| 602 |
< |
std::ofstream eorStream; |
| 602 |
> |
std::ostream* eorStream; |
| 603 |
|
|
| 604 |
|
#ifdef IS_MPI |
| 605 |
|
if (worldRank == 0) { |
| 606 |
|
#endif // is_mpi |
| 607 |
|
|
| 608 |
< |
eorStream.open(eorFilename_.c_str()); |
| 587 |
< |
if (!eorStream.is_open()) { |
| 588 |
< |
sprintf(painCave.errMsg, "DumpWriter : Could not open \"%s\" for writing.\n", |
| 589 |
< |
eorFilename_.c_str()); |
| 590 |
< |
painCave.isFatal = 1; |
| 591 |
< |
simError(); |
| 592 |
< |
} |
| 608 |
> |
eorStream = createOStream(eorFilename_); |
| 609 |
|
|
| 610 |
|
#ifdef IS_MPI |
| 611 |
|
} |
| 612 |
|
#endif // is_mpi |
| 613 |
|
|
| 614 |
< |
writeFrame(eorStream); |
| 614 |
> |
writeFrame(*eorStream); |
| 615 |
> |
|
| 616 |
> |
#ifdef IS_MPI |
| 617 |
> |
if (worldRank == 0) { |
| 618 |
> |
#endif // is_mpi |
| 619 |
> |
delete eorStream; |
| 620 |
> |
|
| 621 |
> |
#ifdef IS_MPI |
| 622 |
> |
} |
| 623 |
> |
#endif // is_mpi |
| 624 |
> |
|
| 625 |
|
} |
| 626 |
|
|
| 627 |
|
|
| 628 |
|
void DumpWriter::writeDumpAndEor() { |
| 603 |
– |
std::ofstream eorStream; |
| 629 |
|
std::vector<std::streambuf*> buffers; |
| 630 |
+ |
std::ostream* eorStream; |
| 631 |
|
#ifdef IS_MPI |
| 632 |
|
if (worldRank == 0) { |
| 633 |
|
#endif // is_mpi |
| 634 |
|
|
| 635 |
< |
buffers.push_back(dumpFile_.rdbuf()); |
| 635 |
> |
buffers.push_back(dumpFile_->rdbuf()); |
| 636 |
|
|
| 637 |
< |
eorStream.open(eorFilename_.c_str()); |
| 612 |
< |
if (!eorStream.is_open()) { |
| 613 |
< |
sprintf(painCave.errMsg, "DumpWriter : Could not open \"%s\" for writing.\n", |
| 614 |
< |
eorFilename_.c_str()); |
| 615 |
< |
painCave.isFatal = 1; |
| 616 |
< |
simError(); |
| 617 |
< |
} |
| 637 |
> |
eorStream = createOStream(eorFilename_); |
| 638 |
|
|
| 639 |
< |
buffers.push_back(eorStream.rdbuf()); |
| 639 |
> |
buffers.push_back(eorStream->rdbuf()); |
| 640 |
|
|
| 641 |
|
#ifdef IS_MPI |
| 642 |
|
} |
| 646 |
|
std::ostream os(&tbuf); |
| 647 |
|
|
| 648 |
|
writeFrame(os); |
| 649 |
+ |
|
| 650 |
+ |
#ifdef IS_MPI |
| 651 |
+ |
if (worldRank == 0) { |
| 652 |
+ |
#endif // is_mpi |
| 653 |
+ |
delete eorStream; |
| 654 |
+ |
|
| 655 |
+ |
#ifdef IS_MPI |
| 656 |
+ |
} |
| 657 |
+ |
#endif // is_mpi |
| 658 |
|
|
| 659 |
|
} |
| 660 |
|
|
| 661 |
+ |
std::ostream* DumpWriter::createOStream(const std::string& filename) { |
| 662 |
+ |
std::ostream* newOStream; |
| 663 |
+ |
if (needCompression_) { |
| 664 |
+ |
newOStream = new ogzstream(filename.c_str()); |
| 665 |
+ |
} else { |
| 666 |
+ |
newOStream = new std::ofstream(filename.c_str()); |
| 667 |
+ |
} |
| 668 |
+ |
return newOStream; |
| 669 |
+ |
} |
| 670 |
|
|
| 633 |
– |
|
| 671 |
|
}//end namespace oopse |
