| 38 |  | * University of Notre Dame has been advised of the possibility of | 
| 39 |  | * such damages. | 
| 40 |  | */ | 
| 41 | < | #define __C | 
| 41 | > | #define __OOPSE_C | 
| 42 |  | #include "io/ForceFieldOptions.hpp" | 
| 43 |  |  | 
| 44 |  | namespace oopse { | 
| 45 |  |  | 
| 46 |  | ForceFieldOptions::ForceFieldOptions() { | 
| 47 |  | DefineOptionalParameter(Name, "Name"); | 
| 48 | + | DefineOptionalParameter(CutoffPolicy, "cutoffPolicy"); | 
| 49 |  | DefineOptionalParameterWithDefaultValue(vdWtype, "vdWtype", "Lennard-Jones"); | 
| 50 |  | DefineOptionalParameterWithDefaultValue(DistanceMixingRule, "DistanceMixingRule", "arithmetic"); | 
| 51 |  | DefineOptionalParameterWithDefaultValue(DistanceType, "DistanceType", "sigma"); | 
| 52 |  | DefineOptionalParameterWithDefaultValue(EnergyMixingRule, "EnergyMixingRule", "geometric"); | 
| 53 |  | DefineOptionalParameterWithDefaultValue(EnergyUnitScaling, "EnergyUnitScaling", 1.0); | 
| 54 | + | DefineOptionalParameterWithDefaultValue(MetallicEnergyUnitScaling, "MetallicEnergyUnitScaling", 1.0); | 
| 55 |  | DefineOptionalParameterWithDefaultValue(DistanceUnitScaling, "DistanceUnitScaling", 1.0); | 
| 56 |  | DefineOptionalParameterWithDefaultValue(AngleUnitScaling, "AngleUnitScaling", 1.0); | 
| 57 | < | DefineOptionalParameterWithDefaultValue(TorsionAngleConvention, "TorsionAngleConvention", "180 is trans"); | 
| 57 | > | DefineOptionalParameterWithDefaultValue(TorsionAngleConvention, "TorsionAngleConvention", "180_is_trans"); | 
| 58 | > | DefineOptionalParameterWithDefaultValue(vdw12scale, "vdW-12-scale", 0.0); | 
| 59 | > | DefineOptionalParameterWithDefaultValue(vdw13scale, "vdW-13-scale", 0.0); | 
| 60 |  | DefineOptionalParameterWithDefaultValue(vdw14scale, "vdW-14-scale", 0.0); | 
| 61 | < | DefineOptionalParameterWithDefaultValue(electrostatic14scale, "electrostatic-14-scale", 0.0); | 
| 62 | < | DefineOptionalParameterWithDefaultValue(dielectric, "dielectric", 1.0); | 
| 61 | > | DefineOptionalParameterWithDefaultValue(electrostatic12scale, "electrostatic-12-scale", 0.0) | 
| 62 | > | DefineOptionalParameterWithDefaultValue(electrostatic13scale, "electrostatic-13-scale", 0.0) | 
| 63 | > | DefineOptionalParameterWithDefaultValue(electrostatic14scale, "electrostatic-14-scale", 0.0) | 
| 64 | > | DefineOptionalParameterWithDefaultValue(GayBerneMu, "GayBerneMu", 2.0); | 
| 65 | > | DefineOptionalParameterWithDefaultValue(GayBerneNu, "GayBerneNu", 1.0); | 
| 66 |  | } | 
| 67 |  |  | 
| 68 |  |  | 
| 69 |  | void ForceFieldOptions::makeFortranOptions(ForceOptions& fortranForceOptions){ | 
| 70 |  |  | 
| 71 | + | fortranForceOptions.vdw12scale = this->getvdw12scale(); | 
| 72 | + | fortranForceOptions.vdw13scale = this->getvdw13scale(); | 
| 73 |  | fortranForceOptions.vdw14scale = this->getvdw14scale(); | 
| 74 | + | fortranForceOptions.electrostatic12scale = this->getelectrostatic12scale(); | 
| 75 | + | fortranForceOptions.electrostatic13scale = this->getelectrostatic13scale(); | 
| 76 |  | fortranForceOptions.electrostatic14scale = this->getelectrostatic14scale(); | 
| 77 | + | fortranForceOptions.GayBerneMu = this->getGayBerneMu(); | 
| 78 | + | fortranForceOptions.GayBerneNu = this->getGayBerneNu(); | 
| 79 |  |  | 
| 80 | + |  | 
| 81 |  | std::string DistanceMix = this->getDistanceMixingRule(); | 
| 82 |  | toUpper(DistanceMix); | 
| 83 |  | if(DistanceMix == "ARITHMETIC"){ | 
| 84 |  | fortranForceOptions.DistanceMixingRule = ARITHMETIC_MIXING_RULE; | 
| 85 |  | }else if(DistanceMix == "GEOMETRIC"){ | 
| 86 |  | fortranForceOptions.DistanceMixingRule = GEOMETRIC_MIXING_RULE; | 
| 87 | + | }else if(DistanceMix == "CUBIC"){ | 
| 88 | + | fortranForceOptions.DistanceMixingRule = CUBIC_MIXING_RULE; | 
| 89 |  | }else{ | 
| 90 |  | fortranForceOptions.DistanceMixingRule = ARITHMETIC_MIXING_RULE; | 
| 91 |  | } | 
| 95 |  | fortranForceOptions.EnergyMixingRule = ARITHMETIC_MIXING_RULE; | 
| 96 |  | }else if(EnergyMix == "GEOMETRIC"){ | 
| 97 |  | fortranForceOptions.EnergyMixingRule = GEOMETRIC_MIXING_RULE; | 
| 98 | + | }else if(EnergyMix == "HHG"){ | 
| 99 | + | fortranForceOptions.EnergyMixingRule = HHG_MIXING_RULE; | 
| 100 |  | }else{ | 
| 101 |  | fortranForceOptions.EnergyMixingRule = GEOMETRIC_MIXING_RULE; | 
| 102 |  | } |