# | Line 98 | Line 98 | Globals::Globals() { | |
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98 | DefineOptionalParameter(ElectrostaticScreeningMethod, "electrostaticScreeningMethod"); | |
99 | DefineOptionalParameter(CutoffPolicy, "cutoffPolicy"); | |
100 | DefineOptionalParameter(SwitchingFunctionType, "switchingFunctionType"); | |
101 | – | DefineOptionalParameterWithDefaultValue(MixingRule, "mixingRule", "standard"); |
101 | DefineOptionalParameterWithDefaultValue(UsePeriodicBoundaryConditions, "usePeriodicBoundaryConditions", true); | |
102 | DefineOptionalParameterWithDefaultValue(UseInitalTime, "useInitialTime", false); | |
103 | DefineOptionalParameterWithDefaultValue(UseIntialExtendedSystemState, "useInitialExtendedSystemState", false); | |
# | Line 130 | Line 129 | void Globals::validate() { | |
129 | ||
130 | CheckParameter(ForceField, isNotEmpty()); | |
131 | CheckParameter(TargetTemp, isPositive()); | |
132 | < | CheckParameter(Ensemble, isEqualIgnoreCase(std::string("NVE")) || isEqualIgnoreCase(std::string("NVT")) || isEqualIgnoreCase(std::string("NPTi")) || isEqualIgnoreCase(std::string("NPTf")) || isEqualIgnoreCase(std::string("NPTxyz")) ); |
132 | > | CheckParameter(Ensemble, isEqualIgnoreCase("NVE") || isEqualIgnoreCase("NVT") || isEqualIgnoreCase("NPTi") || isEqualIgnoreCase("NPTf") || isEqualIgnoreCase("NPTxyz") || isEqualIgnoreCase("NPAT") ); |
133 | CheckParameter(Dt, isPositive()); | |
134 | CheckParameter(RunTime, isPositive()); | |
135 | CheckParameter(InitialConfig, isNotEmpty()); | |
# | Line 148 | Line 147 | void Globals::validate() { | |
147 | CheckParameter(ZconsTime, isPositive()); | |
148 | CheckParameter(ZconsTol, isPositive()); | |
149 | CheckParameter(Seed, isPositive()); | |
150 | < | CheckParameter(Minimizer, isEqualIgnoreCase(std::string("SD")) || isEqualIgnoreCase(std::string("CG"))); |
150 | > | CheckParameter(Minimizer, isEqualIgnoreCase("SD") || isEqualIgnoreCase("CG")); |
151 | CheckParameter(MinimizerMaxIter, isPositive()); | |
152 | CheckParameter(MinimizerWriteFrq, isPositive()); | |
153 | CheckParameter(MinimizerStepSize, isPositive()); | |
# | Line 166 | Line 165 | void Globals::validate() { | |
165 | CheckParameter(ThermIntThetaSpringConst, isPositive()); | |
166 | CheckParameter(ThermIntOmegaSpringConst, isPositive()); | |
167 | CheckParameter(SurfaceTension, isPositive()); | |
168 | < | CheckParameter(ElectrostaticSummationMethod, isEqualIgnoreCase(std::string("NONE")) || isEqualIgnoreCase(std::string("SHIFTED_POTENTIAL")) || isEqualIgnoreCase(std::string("SHIFTED_FORCE")) || isEqualIgnoreCase(std::string("REACTION_FIELD"))); |
169 | < | CheckParameter(ElectrostaticScreeningMethod, isEqualIgnoreCase(std::string("UNDAMPED")) || isEqualIgnoreCase(std::string("DAMPED"))); |
170 | < | CheckParameter(CutoffPolicy, isEqualIgnoreCase(std::string("MIX")) || isEqualIgnoreCase(std::string("MAX")) || isEqualIgnoreCase(std::string("TRADITIONAL"))); |
171 | < | CheckParameter(SwitchingFunctionType, isEqualIgnoreCase(std::string("CUBIC")) || isEqualIgnoreCase(std::string("FIFTH_ORDER_POLYNOMIAL"))); |
168 | > | CheckParameter(ElectrostaticSummationMethod, isEqualIgnoreCase("NONE") || isEqualIgnoreCase("SHIFTED_POTENTIAL") || isEqualIgnoreCase("SHIFTED_FORCE") || isEqualIgnoreCase("REACTION_FIELD")); |
169 | > | CheckParameter(ElectrostaticScreeningMethod, isEqualIgnoreCase("UNDAMPED") || isEqualIgnoreCase("DAMPED")); |
170 | > | CheckParameter(CutoffPolicy, isEqualIgnoreCase("MIX") || isEqualIgnoreCase("MAX") || isEqualIgnoreCase("TRADITIONAL")); |
171 | > | CheckParameter(SwitchingFunctionType, isEqualIgnoreCase("CUBIC") || isEqualIgnoreCase("FIFTH_ORDER_POLYNOMIAL")); |
172 | //CheckParameter(StatFileFormat,); | |
174 | – | //CheckParameter(MixingRule,); |
173 | CheckParameter(OrthoBoxTolerance, isPositive()); | |
174 | CheckParameter(ThermIntDistSpringConst, isPositive()); | |
175 | CheckParameter(ThermIntThetaSpringConst, isPositive()); | |
# | Line 181 | Line 179 | void Globals::validate() { | |
179 | ||
180 | for(std::vector<Component*>::iterator i = components_.begin(); i != components_.end(); ++i) { | |
181 | if (!(*i)->findMoleculeStamp(moleculeStamps_)) { | |
182 | < | std::cout << "Globals Error: can not find molecule stamp for component" << std::endl; |
182 | > | std::ostringstream oss; |
183 | > | oss << "Globals Error: can not find molecule stamp for component " << (*i)->getType() << std::endl; |
184 | > | throw OOPSEException(oss.str()); |
185 | } | |
186 | } | |
187 | } | |
# | Line 205 | Line 205 | bool Globals::addMoleculeStamp(MoleculeStamp* molStamp | |
205 | moleculeStamps_.insert(std::map<std::string, MoleculeStamp*>::value_type(molStampName, molStamp)); | |
206 | ret = true; | |
207 | } else { | |
208 | < | std::cout << "Globals Error: Molecule Stamp " << molStamp->getName() << "appears multiple times\n"; |
208 | > | std::ostringstream oss; |
209 | > | oss << "Globals Error: Molecule Stamp " << molStamp->getName() << "appears multiple times\n"; |
210 | > | throw OOPSEException(oss.str()); |
211 | } | |
212 | return ret; | |
213 | } |
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