| 57 |
|
DefineOptionalParameter(Ensemble, "ensemble"); |
| 58 |
|
DefineOptionalParameter(Dt, "dt"); |
| 59 |
|
DefineOptionalParameter(RunTime, "runTime"); |
| 60 |
< |
DefineOptionalParameter(InitialConfig, "initialConfig"); |
| 60 |
> |
//DefineOptionalParameter(InitialConfig, "initialConfig"); |
| 61 |
|
DefineOptionalParameter(FinalConfig, "finalConfig"); |
| 62 |
|
DefineOptionalParameter(SampleTime, "sampleTime"); |
| 63 |
|
DefineOptionalParameter(ResetTime, "resetTime"); |
| 64 |
|
DefineOptionalParameter(StatusTime, "statusTime"); |
| 65 |
|
DefineOptionalParameter(CutoffRadius, "cutoffRadius"); |
| 66 |
|
DefineOptionalParameter(SwitchingRadius, "switchingRadius"); |
| 67 |
– |
DefineOptionalParameter(Dielectric, "dielectric"); |
| 67 |
|
DefineOptionalParameter(TempSet, "tempSet"); |
| 68 |
|
DefineOptionalParameter(ThermalTime, "thermalTime"); |
| 69 |
|
DefineOptionalParameter(TargetPressure, "targetPressure"); |
| 112 |
|
DefineOptionalParameterWithDefaultValue(ThermIntDistSpringConst, "thermIntDistSpringConst", 6.0); |
| 113 |
|
DefineOptionalParameterWithDefaultValue(ThermIntThetaSpringConst, "thermIntThetaSpringConst", 7.5); |
| 114 |
|
DefineOptionalParameterWithDefaultValue(ThermIntOmegaSpringConst, "thermIntOmegaSpringConst", 13.5); |
| 115 |
< |
DefineOptionalParameterWithDefaultValue(DampingAlpha, "dampingAlpha", 0.2); |
| 115 |
> |
DefineOptionalParameter(DampingAlpha, "dampingAlpha"); |
| 116 |
> |
DefineOptionalParameterWithDefaultValue(Dielectric, "dielectric", 78.5); |
| 117 |
|
DefineOptionalParameterWithDefaultValue(CompressDumpFile, "compressDumpFile", 0); |
| 118 |
|
DefineOptionalParameterWithDefaultValue(OutputForceVector, "outputForceVector", 0); |
| 119 |
|
DefineOptionalParameterWithDefaultValue(SkinThickness, "skinThickness", 1.0); |
| 124 |
|
|
| 125 |
|
deprecatedKeywords_.insert("nComponents"); |
| 126 |
|
deprecatedKeywords_.insert("nZconstraints"); |
| 127 |
+ |
deprecatedKeywords_.insert("initialConfig"); |
| 128 |
|
|
| 129 |
|
} |
| 130 |
|
|
| 138 |
|
|
| 139 |
|
CheckParameter(ForceField, isNotEmpty()); |
| 140 |
|
CheckParameter(TargetTemp, isPositive()); |
| 141 |
< |
CheckParameter(Ensemble, isEqualIgnoreCase("NVE") || isEqualIgnoreCase("NVT") || isEqualIgnoreCase("NPTi") || isEqualIgnoreCase("NPTf") || isEqualIgnoreCase("NPTxyz") || isEqualIgnoreCase("NPAT") || isEqualIgnoreCase("LANGEVINDYNAMICS") || isEqualIgnoreCase("LD") || isEqualIgnoreCase("NPRT") || isEqualIgnoreCase("NPGT")); |
| 141 |
> |
CheckParameter(Ensemble, isEqualIgnoreCase("NVE") || isEqualIgnoreCase("NVT") || isEqualIgnoreCase("NPTi") || isEqualIgnoreCase("NPTf") || isEqualIgnoreCase("NPTxyz") || isEqualIgnoreCase("NPAT") || isEqualIgnoreCase("LANGEVINDYNAMICS") || isEqualIgnoreCase("LD") || isEqualIgnoreCase("NPRT") || isEqualIgnoreCase("NPGT") || isEqualIgnoreCase("NGammaT") || isEqualIgnoreCase("NGT")); |
| 142 |
|
CheckParameter(Dt, isPositive()); |
| 143 |
|
CheckParameter(RunTime, isPositive()); |
| 144 |
< |
CheckParameter(InitialConfig, isNotEmpty()); |
| 144 |
> |
//CheckParameter(InitialConfig, isNotEmpty()); |
| 145 |
|
CheckParameter(FinalConfig, isNotEmpty()); |
| 146 |
|
CheckParameter(SampleTime, isNonNegative()); |
| 147 |
|
CheckParameter(ResetTime, isNonNegative()); |