| 74 |
|
DefineOptionalParameter(Seed, "seed"); |
| 75 |
|
DefineOptionalParameter(Minimizer, "minimizer"); |
| 76 |
|
DefineOptionalParameter(MinimizerMaxIter,"minimizerMaxIter"); |
| 77 |
< |
DefineOptionalParameter(MinimizerWriteFrq, "minimizerWriteFrq"); |
| 77 |
> |
DefineOptionalParameter(MinimizerWriteFreq, "minimizerWriteFreq"); |
| 78 |
|
DefineOptionalParameter(MinimizerStepSize, "minimizerStepSize"); |
| 79 |
|
DefineOptionalParameter(MinimizerFTol, "minimizerFTol"); |
| 80 |
|
DefineOptionalParameter(MinimizerGTol, "minimizerGTol"); |
| 131 |
|
DefineOptionalParameterWithDefaultValue(RNEMD_exchangeType, "RNEMD_exchangeType", "KineticScale"); |
| 132 |
|
DefineOptionalParameterWithDefaultValue(RNEMD_targetFlux, "RNEMD_targetFlux", 0.0); |
| 133 |
|
DefineOptionalParameterWithDefaultValue(RNEMD_objectSelection, "RNEMD_objectSelection", "select all"); |
| 134 |
+ |
DefineOptionalParameterWithDefaultValue(RNEMD_binShift, "RNEMD_binShift", false); |
| 135 |
+ |
DefineOptionalParameterWithDefaultValue(RNEMD_outputDimensionalTemperature, "RNEMD_outputDimensionalTemperature", false); |
| 136 |
|
DefineOptionalParameterWithDefaultValue(UseRestraints, "useRestraints", false); |
| 137 |
|
DefineOptionalParameterWithDefaultValue(Restraint_file, "Restraint_file", "idealCrystal.in"); |
| 138 |
|
DefineOptionalParameterWithDefaultValue(UseThermodynamicIntegration, "useThermodynamicIntegration", false); |
| 161 |
|
|
| 162 |
|
CheckParameter(ForceField, isNotEmpty()); |
| 163 |
|
CheckParameter(TargetTemp, isPositive()); |
| 164 |
< |
CheckParameter(Ensemble, isEqualIgnoreCase("NVE") || isEqualIgnoreCase("NVT") || isEqualIgnoreCase("NPTi") || isEqualIgnoreCase("NPTf") || isEqualIgnoreCase("NPTxyz") || isEqualIgnoreCase("NPAT") || isEqualIgnoreCase("LANGEVINDYNAMICS") || isEqualIgnoreCase("LD") || isEqualIgnoreCase("NPRT") || isEqualIgnoreCase("NPGT") || isEqualIgnoreCase("NGammaT") || isEqualIgnoreCase("NGT") || isEqualIgnoreCase("SMIPD")); |
| 164 |
> |
CheckParameter(Ensemble, isEqualIgnoreCase("NVE") || isEqualIgnoreCase("NVT") || isEqualIgnoreCase("NPTi") || isEqualIgnoreCase("NPTf") || isEqualIgnoreCase("NPTxyz") || isEqualIgnoreCase("NPTsz") || isEqualIgnoreCase("NPAT") || isEqualIgnoreCase("LANGEVINDYNAMICS") || isEqualIgnoreCase("LD") || isEqualIgnoreCase("NPRT") || isEqualIgnoreCase("NPGT") || isEqualIgnoreCase("NGammaT") || isEqualIgnoreCase("NGT") || isEqualIgnoreCase("LANGEVINHULL") || isEqualIgnoreCase("LHULL") || isEqualIgnoreCase("SMIPD")); |
| 165 |
|
CheckParameter(Dt, isPositive()); |
| 166 |
|
CheckParameter(RunTime, isPositive()); |
| 167 |
|
CheckParameter(FinalConfig, isNotEmpty()); |
| 179 |
|
CheckParameter(Seed, isPositive()); |
| 180 |
|
CheckParameter(Minimizer, isEqualIgnoreCase("SD") || isEqualIgnoreCase("CG")); |
| 181 |
|
CheckParameter(MinimizerMaxIter, isPositive()); |
| 182 |
< |
CheckParameter(MinimizerWriteFrq, isPositive()); |
| 182 |
> |
CheckParameter(MinimizerWriteFreq, isPositive()); |
| 183 |
|
CheckParameter(MinimizerStepSize, isPositive()); |
| 184 |
|
CheckParameter(MinimizerFTol, isPositive()); |
| 185 |
|
CheckParameter(MinimizerGTol, isPositive()); |
| 207 |
|
CheckParameter(RNEMD_exchangeTime, isPositive()); |
| 208 |
|
CheckParameter(RNEMD_nBins, isPositive() && isEven()); |
| 209 |
|
CheckParameter(RNEMD_exchangeType, isEqualIgnoreCase("KineticSwap") || isEqualIgnoreCase("KineticScale") || isEqualIgnoreCase("Px") || isEqualIgnoreCase("Py") || isEqualIgnoreCase("Pz") || isEqualIgnoreCase("PxScale") || isEqualIgnoreCase("PyScale") || isEqualIgnoreCase("PzScale")); |
| 210 |
< |
CheckParameter(RNEMD_targetFlux, isNonNegative()); |
| 210 |
> |
//CheckParameter(RNEMD_targetFlux, isNonNegative()); |
| 211 |
|
CheckParameter(HULL_Method, isEqualIgnoreCase("Convex") || isEqualIgnoreCase("AlphaShape")); |
| 212 |
|
CheckParameter(Alpha, isPositive()); |
| 213 |
|
|