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#include "io/mpiBASS.h" |
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#endif // is_mpi |
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#include "io/ParamConstraint.hpp" |
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#define DefineParameter(NAME,KEYWORD) \ |
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NAME.setKeyword(KEYWORD); \ |
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NAME.setKeyword(KEYWORD); NAME.setOptional(true); NAME.setDefaultValue(DEFAULTVALUE); \ |
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parameters_.insert(std::make_pair(std::string(KEYWORD), &NAME)); |
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#define CheckParameter(NAME, CONSTRAINT) \ |
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if (!NAME.empty()) { if (!(CONSTRAINT)(NAME.getData())) { sprintf(painCave.errMsg,"Error in checking %s : should be %s\n",NAME.getKeyword().c_str(),(CONSTRAINT).getConstraintDescription().c_str()); painCave.isFatal = 1; painCave.severity = OOPSE_ERROR; simError();} } |
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Globals::Globals(){ |
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DefineParameter(ForceField, "forceField") |
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DefineOptionalParameter(PrintPressureTensor, "printPressureTensor"); |
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DefineOptionalParameter(ElectrostaticSummationMethod, "electrostaticSummationMethod"); |
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DefineOptionalParameter(CutoffPolicy, "cutoffPolicy"); |
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DefineOptionalParameter(StatFileFormat, "statFileFormat"); |
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DefineOptionalParameterWithDefaultValue(MixingRule, "mixingRule", "standard"); |
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DefineOptionalParameterWithDefaultValue(UsePeriodicBoundaryConditions, "usePeriodicBoundaryConditions", true); |
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DefineOptionalParameterWithDefaultValue(DampingAlpha, "dampingAlpha", 1.5); |
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DefineOptionalParameterWithDefaultValue(CompressDumpFile, "compressDumpFile", 0); |
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DefineOptionalParameterWithDefaultValue(SkinThickness, "skinThickness", 1.0); |
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DefineOptionalParameterWithDefaultValue(StatFileFormat, "statFileFormat", "TIME|TOTAL_ENERGY|POTENTIAL_ENERGY|KINETIC_ENERGY|TEMPERATURE|PRESSURE|VOLUME|CONSERVED_QUANTITY"); |
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} |
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int Globals::globalAssign( event* the_event ){ |
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char errorMessage[65535]; |
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int key; |
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int token; |
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interface_assign_type the_type = the_event->evt.asmt.asmt_type; |
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char* lhs = the_event->evt.asmt.lhs; |
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std::string keyword(lhs); |
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bool result; |
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bool result = false; |
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/**@todo fix memory leak */ |
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ParamMap::iterator i =parameters_.find(keyword); |
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if (i != parameters_.end()) { |
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if( the_type == STRING ){ |
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result = i->second->setData(std::string(the_event->evt.asmt.rhs.sval)); |
| 158 |
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if (!result ) { |
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sprintf(the_event->err_msg, "Error in parsing meta-data file!\n\t%s must be a string.\n", keyword.c_str() ); |
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sprintf(errorMessage, "Error in parsing %s: expect %s, but get a string \"%s\".\n", keyword.c_str(), i->second->getParamType().c_str(), the_event->evt.asmt.rhs.sval); |
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the_event->err_msg = strdup(errorMessage); |
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} |
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} else if( the_type == DOUBLE ){ |
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result = i->second->setData(the_event->evt.asmt.rhs.dval); |
| 164 |
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if (!result ) |
| 165 |
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sprintf(the_event->err_msg, "Error in parsing meta-data file!\n\t%s must be a double.\n", keyword.c_str() ); |
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> |
sprintf(errorMessage, "Error in parsing %s: expect %s, but get a double %f.\n", keyword.c_str(), i->second->getParamType().c_str(), the_event->evt.asmt.rhs.dval ); |
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> |
the_event->err_msg = strdup(errorMessage); |
| 167 |
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} |
| 168 |
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else if (the_type == INT ){ |
| 169 |
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result = i->second->setData(the_event->evt.asmt.rhs.ival); |
| 170 |
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if (!result ) |
| 171 |
< |
sprintf(the_event->err_msg, "Error in parsing meta-data file!\n\t%s must be an int.\n", keyword.c_str() ); |
| 171 |
> |
sprintf(errorMessage, "Error in parsing %s: expect %s, but get an int %d.\n", keyword.c_str(), i->second->getParamType().c_str(), the_event->evt.asmt.rhs.ival ); |
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> |
the_event->err_msg = strdup(errorMessage); |
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} else { |
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> |
sprintf(errorMessage, "Internal error of parser\n"); |
| 176 |
> |
the_event->err_msg = strdup(errorMessage); |
| 177 |
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} |
| 178 |
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} else { |
| 179 |
+ |
sprintf(errorMessage, "%s is an unrecognized keyword\n", keyword.c_str() ); |
| 180 |
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the_event->err_msg = strdup(errorMessage); |
| 181 |
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} |
| 182 |
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| 183 |
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if (keyword == "nComponents" && getNComponents() > 0) { |
| 336 |
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} |
| 337 |
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} |
| 338 |
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| 339 |
+ |
CheckParameter(ForceField, isNotEmpty()); |
| 340 |
+ |
CheckParameter(NComponents,isPositive()); |
| 341 |
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CheckParameter(TargetTemp, isPositive()); |
| 342 |
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CheckParameter(Ensemble, isEqualIgnoreCase(std::string("NVE")) || isEqualIgnoreCase(std::string("NVT")) || |
| 343 |
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isEqualIgnoreCase(std::string("NPTi")) || isEqualIgnoreCase(std::string("NPTf"))|| |
| 344 |
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isEqualIgnoreCase(std::string("NPTxyz")) ); |
| 345 |
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CheckParameter(Dt, isPositive()); |
| 346 |
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CheckParameter(RunTime, isPositive()); |
| 347 |
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CheckParameter(InitialConfig, isNotEmpty()); |
| 348 |
+ |
CheckParameter(FinalConfig, isNotEmpty()); |
| 349 |
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CheckParameter(NMol, isPositive()); |
| 350 |
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CheckParameter(Density, isPositive()); |
| 351 |
+ |
CheckParameter(Box, isPositive()); |
| 352 |
+ |
CheckParameter(BoxX, isPositive()); |
| 353 |
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CheckParameter(BoxY, isPositive()); |
| 354 |
+ |
CheckParameter(BoxZ, isPositive()); |
| 355 |
+ |
CheckParameter(SampleTime, isNonNegative()); |
| 356 |
+ |
CheckParameter(ResetTime, isNonNegative()); |
| 357 |
+ |
CheckParameter(StatusTime, isNonNegative()); |
| 358 |
+ |
CheckParameter(CutoffRadius, isPositive()); |
| 359 |
+ |
CheckParameter(SwitchingRadius, isNonNegative()); |
| 360 |
+ |
CheckParameter(Dielectric, isPositive()); |
| 361 |
+ |
CheckParameter(ThermalTime, isNonNegative()); |
| 362 |
+ |
CheckParameter(TargetPressure, isPositive()); |
| 363 |
+ |
CheckParameter(TauThermostat, isPositive()); |
| 364 |
+ |
CheckParameter(TauBarostat, isPositive()); |
| 365 |
+ |
CheckParameter(ZconsTime, isPositive()); |
| 366 |
+ |
CheckParameter(NZconstraints, isPositive()); |
| 367 |
+ |
CheckParameter(ZconsTol, isPositive()); |
| 368 |
+ |
//CheckParameter(ZconsForcePolicy,); |
| 369 |
+ |
CheckParameter(Seed, isPositive()); |
| 370 |
+ |
CheckParameter(Minimizer, isEqualIgnoreCase(std::string("SD")) || isEqualIgnoreCase(std::string("CG"))); |
| 371 |
+ |
CheckParameter(MinimizerMaxIter, isPositive()); |
| 372 |
+ |
CheckParameter(MinimizerWriteFrq, isPositive()); |
| 373 |
+ |
CheckParameter(MinimizerStepSize, isPositive()); |
| 374 |
+ |
CheckParameter(MinimizerFTol, isPositive()); |
| 375 |
+ |
CheckParameter(MinimizerGTol, isPositive()); |
| 376 |
+ |
CheckParameter(MinimizerLSTol, isPositive()); |
| 377 |
+ |
CheckParameter(MinimizerLSMaxIter, isPositive()); |
| 378 |
+ |
CheckParameter(ZconsGap, isPositive()); |
| 379 |
+ |
CheckParameter(ZconsFixtime, isPositive()); |
| 380 |
+ |
CheckParameter(ThermodynamicIntegrationLambda, isPositive()); |
| 381 |
+ |
CheckParameter(ThermodynamicIntegrationK, isPositive()); |
| 382 |
+ |
CheckParameter(ForceFieldVariant, isNotEmpty()); |
| 383 |
+ |
CheckParameter(ForceFieldFileName, isNotEmpty()); |
| 384 |
+ |
CheckParameter(ThermIntDistSpringConst, isPositive()); |
| 385 |
+ |
CheckParameter(ThermIntThetaSpringConst, isPositive()); |
| 386 |
+ |
CheckParameter(ThermIntOmegaSpringConst, isPositive()); |
| 387 |
+ |
CheckParameter(SurfaceTension, isPositive()); |
| 388 |
+ |
CheckParameter(ElectrostaticSummationMethod, isEqualIgnoreCase(std::string("NONE")) || isEqualIgnoreCase(std::string("UNDAMPED_WOLF")) || isEqualIgnoreCase(std::string("DAMPED_WOLF")) || isEqualIgnoreCase(std::string("REACTION_FIELD")) ); |
| 389 |
+ |
CheckParameter(CutoffPolicy, isEqualIgnoreCase(std::string("MIX")) || isEqualIgnoreCase(std::string("MAX")) || isEqualIgnoreCase(std::string("TRADITIONAL"))); |
| 390 |
+ |
//CheckParameter(StatFileFormat,); |
| 391 |
+ |
//CheckParameter(MixingRule,); |
| 392 |
+ |
CheckParameter(OrthoBoxTolerance, isPositive()); |
| 393 |
+ |
CheckParameter(ThermIntDistSpringConst, isPositive()); |
| 394 |
+ |
CheckParameter(ThermIntThetaSpringConst, isPositive()); |
| 395 |
+ |
CheckParameter(ThermIntOmegaSpringConst, isPositive()); |
| 396 |
+ |
CheckParameter(DampingAlpha,isPositive()); |
| 397 |
+ |
CheckParameter(SkinThickness, isPositive()); |
| 398 |
+ |
|
| 399 |
|
//@todo memory leak |
| 400 |
|
if( have_err ) |
| 401 |
|
return strdup( err.c_str() ); |