| 123 |
|
DefineOptionalParameter(ElectrostaticSummationMethod, "electrostaticSummationMethod"); |
| 124 |
|
DefineOptionalParameter(ElectrostaticScreeningMethod, "electrostaticScreeningMethod"); |
| 125 |
|
DefineOptionalParameter(CutoffPolicy, "cutoffPolicy"); |
| 126 |
< |
|
| 126 |
> |
DefineOptionalParameter(SwitchingFunctionType, "switchingFunctionType"); |
| 127 |
|
DefineOptionalParameterWithDefaultValue(MixingRule, "mixingRule", "standard"); |
| 128 |
|
DefineOptionalParameterWithDefaultValue(UsePeriodicBoundaryConditions, "usePeriodicBoundaryConditions", true); |
| 129 |
|
DefineOptionalParameterWithDefaultValue(UseInitalTime, "useInitialTime", false); |
| 136 |
|
DefineOptionalParameterWithDefaultValue(ThermIntOmegaSpringConst, "thermIntOmegaSpringConst", 13.5); |
| 137 |
|
DefineOptionalParameterWithDefaultValue(DampingAlpha, "dampingAlpha", 0.2); |
| 138 |
|
DefineOptionalParameterWithDefaultValue(CompressDumpFile, "compressDumpFile", 0); |
| 139 |
+ |
DefineOptionalParameterWithDefaultValue(OutputForceVector, "outputForceVector", 0); |
| 140 |
|
DefineOptionalParameterWithDefaultValue(SkinThickness, "skinThickness", 1.0); |
| 141 |
|
DefineOptionalParameterWithDefaultValue(StatFileFormat, "statFileFormat", "TIME|TOTAL_ENERGY|POTENTIAL_ENERGY|KINETIC_ENERGY|TEMPERATURE|PRESSURE|VOLUME|CONSERVED_QUANTITY"); |
| 142 |
|
|
| 341 |
|
CheckParameter(ForceField, isNotEmpty()); |
| 342 |
|
CheckParameter(NComponents,isPositive()); |
| 343 |
|
CheckParameter(TargetTemp, isPositive()); |
| 344 |
< |
CheckParameter(Ensemble, isEqualIgnoreCase(std::string("NVE")) || isEqualIgnoreCase(std::string("NVT")) || |
| 345 |
< |
isEqualIgnoreCase(std::string("NPTi")) || isEqualIgnoreCase(std::string("NPTf"))|| |
| 346 |
< |
isEqualIgnoreCase(std::string("NPTxyz")) ); |
| 344 |
> |
CheckParameter(Ensemble, isEqualIgnoreCase(std::string("NVE")) || |
| 345 |
> |
isEqualIgnoreCase(std::string("NVT")) || |
| 346 |
> |
isEqualIgnoreCase(std::string("NPTi")) || |
| 347 |
> |
isEqualIgnoreCase(std::string("NPTf")) || |
| 348 |
> |
isEqualIgnoreCase(std::string("NPTxyz")) ); |
| 349 |
|
CheckParameter(Dt, isPositive()); |
| 350 |
|
CheckParameter(RunTime, isPositive()); |
| 351 |
|
CheckParameter(InitialConfig, isNotEmpty()); |
| 371 |
|
CheckParameter(ZconsTol, isPositive()); |
| 372 |
|
//CheckParameter(ZconsForcePolicy,); |
| 373 |
|
CheckParameter(Seed, isPositive()); |
| 374 |
< |
CheckParameter(Minimizer, isEqualIgnoreCase(std::string("SD")) || isEqualIgnoreCase(std::string("CG"))); |
| 374 |
> |
CheckParameter(Minimizer, isEqualIgnoreCase(std::string("SD")) || |
| 375 |
> |
isEqualIgnoreCase(std::string("CG"))); |
| 376 |
|
CheckParameter(MinimizerMaxIter, isPositive()); |
| 377 |
|
CheckParameter(MinimizerWriteFrq, isPositive()); |
| 378 |
|
CheckParameter(MinimizerStepSize, isPositive()); |
| 390 |
|
CheckParameter(ThermIntThetaSpringConst, isPositive()); |
| 391 |
|
CheckParameter(ThermIntOmegaSpringConst, isPositive()); |
| 392 |
|
CheckParameter(SurfaceTension, isPositive()); |
| 393 |
< |
CheckParameter(ElectrostaticSummationMethod, isEqualIgnoreCase(std::string("NONE")) || isEqualIgnoreCase(std::string("SHIFTED_POTENTIAL")) || isEqualIgnoreCase(std::string("SHIFTED_FORCE")) || isEqualIgnoreCase(std::string("REACTION_FIELD"))); |
| 394 |
< |
CheckParameter(ElectrostaticScreeningMethod, isEqualIgnoreCase(std::string("UNDAMPED")) || isEqualIgnoreCase(std::string("DAMPED"))); |
| 395 |
< |
CheckParameter(CutoffPolicy, isEqualIgnoreCase(std::string("MIX")) || isEqualIgnoreCase(std::string("MAX")) || isEqualIgnoreCase(std::string("TRADITIONAL"))); |
| 393 |
> |
CheckParameter(ElectrostaticSummationMethod, |
| 394 |
> |
isEqualIgnoreCase(std::string("NONE")) || |
| 395 |
> |
isEqualIgnoreCase(std::string("SHIFTED_POTENTIAL")) || |
| 396 |
> |
isEqualIgnoreCase(std::string("SHIFTED_FORCE")) || |
| 397 |
> |
isEqualIgnoreCase(std::string("REACTION_FIELD"))); |
| 398 |
> |
CheckParameter(ElectrostaticScreeningMethod, |
| 399 |
> |
isEqualIgnoreCase(std::string("UNDAMPED")) || |
| 400 |
> |
isEqualIgnoreCase(std::string("DAMPED"))); |
| 401 |
> |
CheckParameter(CutoffPolicy, isEqualIgnoreCase(std::string("MIX")) || |
| 402 |
> |
isEqualIgnoreCase(std::string("MAX")) || |
| 403 |
> |
isEqualIgnoreCase(std::string("TRADITIONAL"))); |
| 404 |
> |
CheckParameter(SwitchingFunctionType, |
| 405 |
> |
isEqualIgnoreCase(std::string("CUBIC")) || |
| 406 |
> |
isEqualIgnoreCase(std::string("FIFTH_ORDER_POLYNOMIAL"))); |
| 407 |
|
//CheckParameter(StatFileFormat,); |
| 408 |
|
//CheckParameter(MixingRule,); |
| 409 |
|
CheckParameter(OrthoBoxTolerance, isPositive()); |