| 110 |  | DefineOptionalParameter(MTM_Sigma, "MTM_Sigma"); | 
| 111 |  | DefineOptionalParameter(MTM_R, "MTM_R"); | 
| 112 |  |  | 
| 113 | + |  | 
| 114 |  |  | 
| 115 |  | DefineOptionalParameterWithDefaultValue(UsePeriodicBoundaryConditions, "usePeriodicBoundaryConditions", true); | 
| 116 |  | DefineOptionalParameterWithDefaultValue(UseAtomicVirial, "useAtomicVirial", true); | 
| 132 |  | DefineOptionalParameterWithDefaultValue(UseSphericalBoundaryConditions, "useSphericalBoundaryConditions", false); | 
| 133 |  | DefineOptionalParameterWithDefaultValue(AccumulateBoxDipole, "accumulateBoxDipole", false); | 
| 134 |  |  | 
| 135 | + | DefineOptionalParameterWithDefaultValue(UseRNEMD, "useRNEMD", false); | 
| 136 | + | DefineOptionalParameterWithDefaultValue(RNEMD_swapTime, "RNEMD_swapTime", 100.0); | 
| 137 | + | DefineOptionalParameterWithDefaultValue(RNEMD_nBins, "RNEMD_nBins", 15); | 
| 138 | + | DefineOptionalParameterWithDefaultValue(RNEMD_swapType, "RNEMD_swapType", "Kinetic"); | 
| 139 | + |  | 
| 140 | + |  | 
| 141 |  | deprecatedKeywords_.insert("nComponents"); | 
| 142 |  | deprecatedKeywords_.insert("nZconstraints"); | 
| 143 |  | deprecatedKeywords_.insert("initialConfig"); | 
| 203 |  | CheckParameter(FrozenBufferRadius, isPositive()); | 
| 204 |  | CheckParameter(LangevinBufferRadius, isPositive()); | 
| 205 |  | CheckParameter(NeighborListNeighbors, isPositive()); | 
| 206 | + | CheckParameter(RNEMD_swapTime, isPositive()); | 
| 207 | + | CheckParameter(RNEMD_nBins, isPositive()); | 
| 208 | + | CheckParameter(RNEMD_swapType, isEqualIgnoreCase("Kinetic") || isEqualIgnoreCase("Px") || isEqualIgnoreCase("Py") || isEqualIgnoreCase("Pz")); | 
| 209 |  |  | 
| 210 |  | for(std::vector<Component*>::iterator i = components_.begin(); i != components_.end(); ++i) { | 
| 211 |  | if (!(*i)->findMoleculeStamp(moleculeStamps_)) { |