| 57 |  | DefineOptionalParameter(Ensemble, "ensemble"); | 
| 58 |  | DefineOptionalParameter(Dt, "dt"); | 
| 59 |  | DefineOptionalParameter(RunTime, "runTime"); | 
| 60 | – | //DefineOptionalParameter(InitialConfig, "initialConfig"); | 
| 60 |  | DefineOptionalParameter(FinalConfig, "finalConfig"); | 
| 61 |  | DefineOptionalParameter(SampleTime, "sampleTime"); | 
| 62 |  | DefineOptionalParameter(ResetTime, "resetTime"); | 
| 87 |  | DefineOptionalParameter(ThermodynamicIntegrationK, "thermodynamicIntegrationK"); | 
| 88 |  | DefineOptionalParameter(ForceFieldVariant, "forceFieldVariant"); | 
| 89 |  | DefineOptionalParameter(ForceFieldFileName, "forceFieldFileName"); | 
| 90 | + | DefineOptionalParameter(DampingAlpha, "dampingAlpha"); | 
| 91 |  | DefineOptionalParameter(ThermIntDistSpringConst, "thermIntDistSpringConst"); | 
| 92 |  | DefineOptionalParameter(ThermIntThetaSpringConst, "thermIntThetaSpringConst"); | 
| 93 |  | DefineOptionalParameter(ThermIntOmegaSpringConst, "thermIntOmegaSpringConst"); | 
| 94 |  | DefineOptionalParameter(SurfaceTension, "surfaceTension"); | 
| 95 |  | DefineOptionalParameter(PrintPressureTensor, "printPressureTensor"); | 
| 96 | – | DefineOptionalParameter(ElectrostaticSummationMethod, "electrostaticSummationMethod"); | 
| 97 | – | DefineOptionalParameter(ElectrostaticScreeningMethod, "electrostaticScreeningMethod"); | 
| 96 |  | DefineOptionalParameter(CutoffPolicy, "cutoffPolicy"); | 
| 97 |  | DefineOptionalParameter(SwitchingFunctionType, "switchingFunctionType"); | 
| 98 |  | DefineOptionalParameter(HydroPropFile, "HydroPropFile"); | 
| 110 |  | DefineOptionalParameterWithDefaultValue(ThermIntDistSpringConst, "thermIntDistSpringConst", 6.0); | 
| 111 |  | DefineOptionalParameterWithDefaultValue(ThermIntThetaSpringConst, "thermIntThetaSpringConst", 7.5); | 
| 112 |  | DefineOptionalParameterWithDefaultValue(ThermIntOmegaSpringConst, "thermIntOmegaSpringConst", 13.5); | 
| 113 | < | DefineOptionalParameter(DampingAlpha, "dampingAlpha"); | 
| 113 | > | DefineOptionalParameterWithDefaultValue(ElectrostaticSummationMethod, "electrostaticSummationMethod", "SHIFTED_FORCE"); | 
| 114 | > | DefineOptionalParameterWithDefaultValue(ElectrostaticScreeningMethod, "electrostaticScreeningMethod", "DAMPED"); | 
| 115 |  | DefineOptionalParameterWithDefaultValue(Dielectric, "dielectric", 78.5); | 
| 116 |  | DefineOptionalParameterWithDefaultValue(CompressDumpFile, "compressDumpFile", 0); | 
| 117 |  | DefineOptionalParameterWithDefaultValue(OutputForceVector, "outputForceVector", 0); | 
| 120 |  | DefineOptionalParameterWithDefaultValue(UseSphericalBoundaryConditions, "useSphericalBoundaryConditions", false); | 
| 121 |  | DefineOptionalParameterWithDefaultValue(AccumulateBoxDipole, "accumulateBoxDipole", false); | 
| 122 |  |  | 
| 123 | < |  | 
| 124 | < | deprecatedKeywords_.insert("nComponents"); | 
| 125 | < | deprecatedKeywords_.insert("nZconstraints"); | 
| 127 | < | deprecatedKeywords_.insert("initialConfig"); | 
| 123 | > | deprecatedKeywords_.insert("nComponents"); | 
| 124 | > | deprecatedKeywords_.insert("nZconstraints"); | 
| 125 | > | deprecatedKeywords_.insert("initialConfig"); | 
| 126 |  |  | 
| 127 |  | } | 
| 128 |  |  | 
| 139 |  | CheckParameter(Ensemble, isEqualIgnoreCase("NVE") || isEqualIgnoreCase("NVT") || isEqualIgnoreCase("NPTi") || isEqualIgnoreCase("NPTf") || isEqualIgnoreCase("NPTxyz") || isEqualIgnoreCase("NPAT")  || isEqualIgnoreCase("LANGEVINDYNAMICS") || isEqualIgnoreCase("LD") || isEqualIgnoreCase("NPRT") || isEqualIgnoreCase("NPGT") || isEqualIgnoreCase("NGammaT") || isEqualIgnoreCase("NGT")); | 
| 140 |  | CheckParameter(Dt, isPositive()); | 
| 141 |  | CheckParameter(RunTime, isPositive()); | 
| 144 | – | //CheckParameter(InitialConfig, isNotEmpty()); | 
| 142 |  | CheckParameter(FinalConfig, isNotEmpty()); | 
| 143 |  | CheckParameter(SampleTime, isNonNegative()); | 
| 144 |  | CheckParameter(ResetTime, isNonNegative()); | 
| 147 |  | CheckParameter(SwitchingRadius, isNonNegative()); | 
| 148 |  | CheckParameter(Dielectric, isPositive()); | 
| 149 |  | CheckParameter(ThermalTime,  isNonNegative()); | 
| 153 | – | //  CheckParameter(TargetPressure,  isPositive()); | 
| 150 |  | CheckParameter(TauThermostat, isPositive()); | 
| 151 |  | CheckParameter(TauBarostat, isPositive()); | 
| 152 |  | CheckParameter(ZconsTime, isPositive()); | 
| 169 |  | CheckParameter(ThermIntDistSpringConst, isPositive()); | 
| 170 |  | CheckParameter(ThermIntThetaSpringConst, isPositive()); | 
| 171 |  | CheckParameter(ThermIntOmegaSpringConst, isPositive()); | 
| 176 | – | //  CheckParameter(SurfaceTension, isNonNegative()); | 
| 172 |  | CheckParameter(ElectrostaticSummationMethod, isEqualIgnoreCase("NONE") || isEqualIgnoreCase("SHIFTED_POTENTIAL") || isEqualIgnoreCase("SHIFTED_FORCE") || isEqualIgnoreCase("REACTION_FIELD")); | 
| 173 |  | CheckParameter(ElectrostaticScreeningMethod, isEqualIgnoreCase("UNDAMPED") || isEqualIgnoreCase("DAMPED")); | 
| 174 |  | CheckParameter(CutoffPolicy, isEqualIgnoreCase("MIX") || isEqualIgnoreCase("MAX") || isEqualIgnoreCase("TRADITIONAL")); |