| 1 | + | /* | 
| 2 | + | * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. | 
| 3 | + | * | 
| 4 | + | * The University of Notre Dame grants you ("Licensee") a | 
| 5 | + | * non-exclusive, royalty free, license to use, modify and | 
| 6 | + | * redistribute this software in source and binary code form, provided | 
| 7 | + | * that the following conditions are met: | 
| 8 | + | * | 
| 9 | + | * 1. Acknowledgement of the program authors must be made in any | 
| 10 | + | *    publication of scientific results based in part on use of the | 
| 11 | + | *    program.  An acceptable form of acknowledgement is citation of | 
| 12 | + | *    the article in which the program was described (Matthew | 
| 13 | + | *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher | 
| 14 | + | *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented | 
| 15 | + | *    Parallel Simulation Engine for Molecular Dynamics," | 
| 16 | + | *    J. Comput. Chem. 26, pp. 252-271 (2005)) | 
| 17 | + | * | 
| 18 | + | * 2. Redistributions of source code must retain the above copyright | 
| 19 | + | *    notice, this list of conditions and the following disclaimer. | 
| 20 | + | * | 
| 21 | + | * 3. Redistributions in binary form must reproduce the above copyright | 
| 22 | + | *    notice, this list of conditions and the following disclaimer in the | 
| 23 | + | *    documentation and/or other materials provided with the | 
| 24 | + | *    distribution. | 
| 25 | + | * | 
| 26 | + | * This software is provided "AS IS," without a warranty of any | 
| 27 | + | * kind. All express or implied conditions, representations and | 
| 28 | + | * warranties, including any implied warranty of merchantability, | 
| 29 | + | * fitness for a particular purpose or non-infringement, are hereby | 
| 30 | + | * excluded.  The University of Notre Dame and its licensors shall not | 
| 31 | + | * be liable for any damages suffered by licensee as a result of | 
| 32 | + | * using, modifying or distributing the software or its | 
| 33 | + | * derivatives. In no event will the University of Notre Dame or its | 
| 34 | + | * licensors be liable for any lost revenue, profit or data, or for | 
| 35 | + | * direct, indirect, special, consequential, incidental or punitive | 
| 36 | + | * damages, however caused and regardless of the theory of liability, | 
| 37 | + | * arising out of the use of or inability to use software, even if the | 
| 38 | + | * University of Notre Dame has been advised of the possibility of | 
| 39 | + | * such damages. | 
| 40 | + | */ | 
| 41 | + |  | 
| 42 |  | #include <stdlib.h> | 
| 43 |  | #include <stdio.h> | 
| 44 |  | #include <string.h> | 
| 112 |  | #define G_THERM_INT_LAMBDA  50 | 
| 113 |  | #define G_THERM_INT_K       51 | 
| 114 |  | #define G_FORCEFIELD_VARIANT 52 | 
| 115 | < |  | 
| 115 | > | #define G_FORCEFIELD_FILENAME 53 | 
| 116 |  | Globals::Globals(){ | 
| 117 |  | initalize(); | 
| 118 |  | } | 
| 196 |  | addHash( "thermodynamicIntegrationLambda",       G_THERM_INT_LAMBDA); | 
| 197 |  | addHash( "thermodynamicIntegrationK",            G_THERM_INT_K); | 
| 198 |  | addHash( "forceFieldVariant",                    G_FORCEFIELD_VARIANT); | 
| 199 | < |  | 
| 199 | > | addHash( "forceFieldFileName",                    G_FORCEFIELD_FILENAME); | 
| 200 | > |  | 
| 201 |  | strcpy( mixingRule,"standard");  //default mixing rules to standard. | 
| 202 |  | usePBC = 1; //default  periodic boundry conditions to on | 
| 203 |  | useRF  = 0; | 
| 254 |  | have_thermodynamic_integration_lambda = 0; | 
| 255 |  | have_thermodynamic_integration_k = 0; | 
| 256 |  | have_forcefield_variant = 0; | 
| 257 | + | have_forcefield_filename = 0; | 
| 258 |  |  | 
| 259 |  | } | 
| 260 |  |  | 
| 1432 |  |  | 
| 1433 |  | case STRING: | 
| 1434 |  | the_event->err_msg = | 
| 1435 | < | strdup( "Error in parsing meta-data file!\n\tminimizer_writefrq is not a double or int.\n" ); | 
| 1435 | > | strdup( "Error in parsing meta-data file!\n\tminimizer_writefrq is not an int.\n" ); | 
| 1436 |  | return 1; | 
| 1437 |  | break; | 
| 1438 |  |  | 
| 1439 |  | case DOUBLE: | 
| 1440 | < | minimizer_writefrq= the_event->evt.asmt.rhs.dval; | 
| 1441 | < | have_minimizer_writefrq = 1; | 
| 1440 | > | the_event->err_msg = | 
| 1441 | > | strdup( "Error in parsing meta-data file!\n\tminimizer_writefrq is not an  int.\n" ); | 
| 1442 |  | return 1; | 
| 1443 |  | break; | 
| 1444 |  |  | 
| 1548 |  |  | 
| 1549 |  | case STRING: | 
| 1550 |  | the_event->err_msg = | 
| 1551 | < | strdup( "Error in parsing meta-data file!\n\tminimizer_ls_maxiteration is not a double or int.\n" ); | 
| 1551 | > | strdup( "Error in parsing meta-data file!\n\tminimizer_ls_maxiteration is not an int.\n" ); | 
| 1552 |  | return 1; | 
| 1553 |  | break; | 
| 1554 |  |  | 
| 1555 |  | case DOUBLE: | 
| 1556 | < | minimizer_ls_maxiteration = the_event->evt.asmt.rhs.dval; | 
| 1557 | < | have_minimizer_ls_maxiteration = 1; | 
| 1556 | > | the_event->err_msg = | 
| 1557 | > | strdup( "Error in parsing meta-data file!\n\tminimizer_ls_maxiteration is not an int.\n" ); | 
| 1558 |  | return 1; | 
| 1559 |  | break; | 
| 1560 |  |  | 
| 1737 |  | return 0; | 
| 1738 |  | break; | 
| 1739 |  | // add more token cases here. | 
| 1740 | + |  | 
| 1741 | + | case G_FORCEFIELD_FILENAME: | 
| 1742 | + | if( the_type == STRING ){ | 
| 1743 | + | strcpy( forcefield_filename, the_event->evt.asmt.rhs.sval ); | 
| 1744 | + | have_forcefield_filename = 1; | 
| 1745 | + | return 1; | 
| 1746 | + | } | 
| 1747 | + |  | 
| 1748 | + | the_event->err_msg = | 
| 1749 | + | strdup( "Error in parsing meta-data file!\n\tforceFieldFileName was not a string assignment.\n" ); | 
| 1750 | + | return 0; | 
| 1751 | + | break; | 
| 1752 | + | // add more token cases here. | 
| 1753 |  | } | 
| 1754 |  | } | 
| 1755 |  |  |