| 131 | 
  | 
  DefineOptionalParameterWithDefaultValue(RNEMD_exchangeType, "RNEMD_exchangeType", "KineticScale"); | 
| 132 | 
  | 
  DefineOptionalParameterWithDefaultValue(RNEMD_targetFlux, "RNEMD_targetFlux", 0.0); | 
| 133 | 
  | 
  DefineOptionalParameterWithDefaultValue(RNEMD_objectSelection, "RNEMD_objectSelection", "select all"); | 
| 134 | 
+ | 
  DefineOptionalParameterWithDefaultValue(RNEMD_binShift, "RNEMD_binShift", false); | 
| 135 | 
+ | 
  DefineOptionalParameterWithDefaultValue(RNEMD_outputDimensionalTemperature, "RNEMD_outputDimensionalTemperature", false); | 
| 136 | 
  | 
  DefineOptionalParameterWithDefaultValue(UseRestraints, "useRestraints", false); | 
| 137 | 
  | 
  DefineOptionalParameterWithDefaultValue(Restraint_file, "Restraint_file", "idealCrystal.in"); | 
| 138 | 
  | 
  DefineOptionalParameterWithDefaultValue(UseThermodynamicIntegration, "useThermodynamicIntegration", false); | 
| 161 | 
  | 
 | 
| 162 | 
  | 
  CheckParameter(ForceField, isNotEmpty()); | 
| 163 | 
  | 
  CheckParameter(TargetTemp, isPositive()); | 
| 164 | 
< | 
  CheckParameter(Ensemble, isEqualIgnoreCase("NVE") || isEqualIgnoreCase("NVT") || isEqualIgnoreCase("NPTi") || isEqualIgnoreCase("NPTf") || isEqualIgnoreCase("NPTxyz") || isEqualIgnoreCase("NPAT")  || isEqualIgnoreCase("LANGEVINDYNAMICS") || isEqualIgnoreCase("LD") || isEqualIgnoreCase("NPRT") || isEqualIgnoreCase("NPGT") || isEqualIgnoreCase("NGammaT") || isEqualIgnoreCase("NGT") || isEqualIgnoreCase("SMIPD")); | 
| 164 | 
> | 
  CheckParameter(Ensemble, isEqualIgnoreCase("NVE") || isEqualIgnoreCase("NVT") || isEqualIgnoreCase("NPTi") || isEqualIgnoreCase("NPTf") || isEqualIgnoreCase("NPTxyz") || isEqualIgnoreCase("NPTsz") || isEqualIgnoreCase("NPAT")  || isEqualIgnoreCase("LANGEVINDYNAMICS") || isEqualIgnoreCase("LD") || isEqualIgnoreCase("NPRT") || isEqualIgnoreCase("NPGT") || isEqualIgnoreCase("NGammaT") || isEqualIgnoreCase("NGT") || isEqualIgnoreCase("LANGEVINHULL") || isEqualIgnoreCase("LHULL") || isEqualIgnoreCase("SMIPD")); | 
| 165 | 
  | 
  CheckParameter(Dt, isPositive()); | 
| 166 | 
  | 
  CheckParameter(RunTime, isPositive()); | 
| 167 | 
  | 
  CheckParameter(FinalConfig, isNotEmpty()); | 
| 207 | 
  | 
  CheckParameter(RNEMD_exchangeTime, isPositive()); | 
| 208 | 
  | 
  CheckParameter(RNEMD_nBins, isPositive() && isEven()); | 
| 209 | 
  | 
  CheckParameter(RNEMD_exchangeType, isEqualIgnoreCase("KineticSwap") || isEqualIgnoreCase("KineticScale") || isEqualIgnoreCase("Px") || isEqualIgnoreCase("Py") || isEqualIgnoreCase("Pz") || isEqualIgnoreCase("PxScale") || isEqualIgnoreCase("PyScale") || isEqualIgnoreCase("PzScale")); | 
| 210 | 
< | 
  CheckParameter(RNEMD_targetFlux, isNonNegative()); | 
| 210 | 
> | 
  //CheckParameter(RNEMD_targetFlux, isNonNegative()); | 
| 211 | 
  | 
  CheckParameter(HULL_Method, isEqualIgnoreCase("Convex") || isEqualIgnoreCase("AlphaShape"));  | 
| 212 | 
  | 
  CheckParameter(Alpha, isPositive());  | 
| 213 | 
  | 
 |