| 1 |  | /* | 
| 2 | < | * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. | 
| 2 | > | * Copyright (c) 2005, 2010 The University of Notre Dame. All Rights Reserved. | 
| 3 |  | * | 
| 4 |  | * The University of Notre Dame grants you ("Licensee") a | 
| 5 |  | * non-exclusive, royalty free, license to use, modify and | 
| 90 |  | DeclareParameter(OrthoBoxTolerance, RealType); | 
| 91 |  | DeclareParameter(Minimizer, std::string); | 
| 92 |  | DeclareParameter(MinimizerMaxIter, RealType); | 
| 93 | < | DeclareParameter(MinimizerWriteFrq, int); | 
| 93 | > | DeclareParameter(MinimizerWriteFreq, int); | 
| 94 |  | DeclareParameter(MinimizerStepSize, RealType); | 
| 95 |  | DeclareParameter(MinimizerFTol, RealType); | 
| 96 |  | DeclareParameter(MinimizerGTol, RealType); | 
| 116 |  | DeclareParameter(SwitchingFunctionType, std::string); | 
| 117 |  | DeclareParameter(CompressDumpFile, bool); | 
| 118 |  | DeclareParameter(OutputForceVector, bool); | 
| 119 | + | DeclareParameter(OutputParticlePotential, bool); | 
| 120 |  | DeclareParameter(SkinThickness, RealType); | 
| 121 |  | DeclareParameter(StatFileFormat, std::string); | 
| 122 |  | DeclareParameter(HydroPropFile, std::string); | 
| 123 |  | DeclareParameter(Viscosity, RealType); | 
| 124 |  | DeclareParameter(BeadSize, RealType); | 
| 124 | – | DeclareParameter(ThermalConductivity, RealType); | 
| 125 | – | DeclareParameter(ThermalLength, RealType); | 
| 125 |  | DeclareParameter(UseSphericalBoundaryConditions, bool); | 
| 126 |  | DeclareParameter(FrozenBufferRadius, RealType); | 
| 127 |  | DeclareParameter(LangevinBufferRadius, RealType); | 
| 140 |  | DeclareParameter(RNEMD_exchangeType, std::string); | 
| 141 |  | DeclareParameter(RNEMD_objectSelection, std::string); | 
| 142 |  | DeclareParameter(RNEMD_targetFlux, RealType); | 
| 143 | + | DeclareParameter(RNEMD_binShift, bool); | 
| 144 | + | DeclareParameter(RNEMD_outputDimensionalTemperature, bool); | 
| 145 |  | DeclareParameter(UseRestraints, bool); | 
| 146 |  | DeclareParameter(Restraint_file, std::string); | 
| 147 | + | DeclareParameter(HULL_Method, std::string); | 
| 148 | + | DeclareParameter(Alpha, RealType); | 
| 149 |  |  | 
| 150 |  | public: | 
| 151 |  | bool addComponent(Component* comp); |