| 1 | < | #ifndef __GLOBALS_H__ | 
| 2 | < | #define __GLOBALS_H__ | 
| 1 | > | /* | 
| 2 | > | * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. | 
| 3 | > | * | 
| 4 | > | * The University of Notre Dame grants you ("Licensee") a | 
| 5 | > | * non-exclusive, royalty free, license to use, modify and | 
| 6 | > | * redistribute this software in source and binary code form, provided | 
| 7 | > | * that the following conditions are met: | 
| 8 | > | * | 
| 9 | > | * 1. Acknowledgement of the program authors must be made in any | 
| 10 | > | *    publication of scientific results based in part on use of the | 
| 11 | > | *    program.  An acceptable form of acknowledgement is citation of | 
| 12 | > | *    the article in which the program was described (Matthew | 
| 13 | > | *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher | 
| 14 | > | *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented | 
| 15 | > | *    Parallel Simulation Engine for Molecular Dynamics," | 
| 16 | > | *    J. Comput. Chem. 26, pp. 252-271 (2005)) | 
| 17 | > | * | 
| 18 | > | * 2. Redistributions of source code must retain the above copyright | 
| 19 | > | *    notice, this list of conditions and the following disclaimer. | 
| 20 | > | * | 
| 21 | > | * 3. Redistributions in binary form must reproduce the above copyright | 
| 22 | > | *    notice, this list of conditions and the following disclaimer in the | 
| 23 | > | *    documentation and/or other materials provided with the | 
| 24 | > | *    distribution. | 
| 25 | > | * | 
| 26 | > | * This software is provided "AS IS," without a warranty of any | 
| 27 | > | * kind. All express or implied conditions, representations and | 
| 28 | > | * warranties, including any implied warranty of merchantability, | 
| 29 | > | * fitness for a particular purpose or non-infringement, are hereby | 
| 30 | > | * excluded.  The University of Notre Dame and its licensors shall not | 
| 31 | > | * be liable for any damages suffered by licensee as a result of | 
| 32 | > | * using, modifying or distributing the software or its | 
| 33 | > | * derivatives. In no event will the University of Notre Dame or its | 
| 34 | > | * licensors be liable for any lost revenue, profit or data, or for | 
| 35 | > | * direct, indirect, special, consequential, incidental or punitive | 
| 36 | > | * damages, however caused and regardless of the theory of liability, | 
| 37 | > | * arising out of the use of or inability to use software, even if the | 
| 38 | > | * University of Notre Dame has been advised of the possibility of | 
| 39 | > | * such damages. | 
| 40 | > | */ | 
| 41 | > |  | 
| 42 | > | #ifndef IO_GLOBALS_HPP | 
| 43 | > | #define IO_GLOBALS_HPP | 
| 44 |  |  | 
| 45 |  | #include <iostream> | 
| 46 |  |  | 
| 47 |  | #include <stdlib.h> | 
| 48 |  | #include <vector> | 
| 49 |  |  | 
| 50 | < | #include "BASS_interface.h" | 
| 51 | < | #include "Component.hpp" | 
| 52 | < | #include "LinkedCommand.hpp" | 
| 53 | < | #include "MakeStamps.hpp" | 
| 54 | < | #include "ZconStamp.hpp" | 
| 50 | > | #include "io/BASS_interface.h" | 
| 51 | > | #include "types/Component.hpp" | 
| 52 | > | #include "io/LinkedCommand.hpp" | 
| 53 | > | #include "types/MakeStamps.hpp" | 
| 54 | > | #include "types/ZconStamp.hpp" | 
| 55 |  |  | 
| 15 | – | using namespace std; | 
| 56 |  |  | 
| 57 | + |  | 
| 58 |  | class Globals{ | 
| 59 |  |  | 
| 60 |  | public: | 
| 129 |  | double getThermIntLambda(void)    { return thermodynamic_integration_lambda; } | 
| 130 |  | double getThermIntK(void)         { return thermodynamic_integration_k; } | 
| 131 |  | char*  getForceFieldVariant( void ) { return forcefield_variant; } | 
| 132 | < |  | 
| 132 | > | char* getForceFieldFileName() { return forcefield_filename;} | 
| 133 |  | short int haveDt( void )            { return have_dt; } | 
| 134 |  | short int haveRunTime( void )       { return have_run_time; } | 
| 135 |  | short int haveEnsemble( void )      { return have_ensemble; } | 
| 173 |  | short int haveThermIntLambda(void)  { return have_thermodynamic_integration_lambda; } | 
| 174 |  | short int haveThermIntK(void)       { return have_thermodynamic_integration_k; } | 
| 175 |  | short int haveForceFieldVariant(void) { return have_forcefield_variant; } | 
| 176 | < |  | 
| 176 | > | short int haveForceFieldFileName(void) { return have_forcefield_filename; } | 
| 177 |  | /* other accessors */ | 
| 178 |  | Component** getComponents( void )   { return components; } | 
| 179 |  | ZconStamp** getZconStamp( void )    { return zConstraints; } | 
| 246 |  | double thermodynamic_integration_lambda; | 
| 247 |  | double thermodynamic_integration_k; | 
| 248 |  | char forcefield_variant[100]; | 
| 249 | < |  | 
| 249 | > | char forcefield_filename[100]; | 
| 250 |  | //required arguments | 
| 251 |  | short int have_force_field, have_n_components, have_target_temp; | 
| 252 |  | short int have_target_pressure, have_ensemble, have_dt, have_run_time; | 
| 269 |  | short int have_thermodynamic_integration_lambda; | 
| 270 |  | short int have_thermodynamic_integration_k; | 
| 271 |  | short int have_forcefield_variant; | 
| 272 | + | short int have_forcefield_filename; | 
| 273 |  | }; | 
| 274 |  |  | 
| 275 |  | #endif |