| 1 | < | /* | 
| 1 | > | /* | 
| 2 |  | * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. | 
| 3 |  | * | 
| 4 |  | * The University of Notre Dame grants you ("Licensee") a | 
| 46 |  |  | 
| 47 |  | #include <stdlib.h> | 
| 48 |  | #include <vector> | 
| 49 | + | #include <string> | 
| 50 | + | #include <map> | 
| 51 |  |  | 
| 52 |  | #include "io/BASS_interface.h" | 
| 53 |  | #include "types/Component.hpp" | 
| 52 | – | #include "io/LinkedCommand.hpp" | 
| 54 |  | #include "types/MakeStamps.hpp" | 
| 55 |  | #include "types/ZconStamp.hpp" | 
| 56 |  |  | 
| 57 |  |  | 
| 58 |  |  | 
| 59 | + | /** | 
| 60 | + | * @class Globals Globals.hpp "io/Globals.hpp" | 
| 61 | + | * @brief parsing and storing global parameters for simulation | 
| 62 | + | * @todo need refactorying | 
| 63 | + | */ | 
| 64 |  | class Globals{ | 
| 65 |  |  | 
| 66 | < | public: | 
| 66 | > | public: | 
| 67 |  |  | 
| 68 |  | Globals(); | 
| 69 |  | ~Globals(); | 
| 139 |  | double getDistSpringConst(void)   { return therm_int_dist_spring; } | 
| 140 |  | double getThetaSpringConst(void)  { return therm_int_theta_spring; } | 
| 141 |  | double getOmegaSpringConst(void)  { return therm_int_omega_spring; } | 
| 142 | + | double getSurfaceTension(void) {return surface_tension; } | 
| 143 | + |  | 
| 144 |  | short int haveDt( void )            { return have_dt; } | 
| 145 |  | short int haveRunTime( void )       { return have_run_time; } | 
| 146 |  | short int haveEnsemble( void )      { return have_ensemble; } | 
| 188 |  | short int haveDistSpringConst(void) { return have_dist_spring_constant; } | 
| 189 |  | short int haveThetaSpringConst(void) { return have_theta_spring_constant; } | 
| 190 |  | short int haveOmegaSpringConst(void) { return have_omega_spring_constant; } | 
| 191 | + | short int haveSurfaceTension(void) { return have_surface_tension; } | 
| 192 |  | /* other accessors */ | 
| 193 |  | Component** getComponents( void )   { return components; } | 
| 194 |  | ZconStamp** getZconStamp( void )    { return zConstraints; } | 
| 195 |  |  | 
| 196 | < | private: | 
| 196 | > | private: | 
| 197 |  |  | 
| 198 | < | int hash_size; | 
| 199 | < | int hash_shift; | 
| 200 | < | int hash( char* text ); | 
| 201 | < | void addHash( char* text, int token ); | 
| 193 | < | LinkedCommand** command_table; | 
| 198 | > |  | 
| 199 | > | typedef std::map<std::string, int> CommandMapType; | 
| 200 | > | CommandMapType command_table; | 
| 201 | > |  | 
| 202 |  |  | 
| 203 |  | char* checkMe( void ); | 
| 204 |  |  | 
| 264 |  | double therm_int_dist_spring; | 
| 265 |  | double therm_int_theta_spring; | 
| 266 |  | double therm_int_omega_spring; | 
| 267 | + | double surface_tension; | 
| 268 | + |  | 
| 269 |  | //required arguments | 
| 270 |  | short int have_force_field, have_n_components, have_target_temp; | 
| 271 |  | short int have_target_pressure, have_ensemble, have_dt, have_run_time; | 
| 292 |  | short int have_dist_spring_constant; | 
| 293 |  | short int have_theta_spring_constant; | 
| 294 |  | short int have_omega_spring_constant; | 
| 295 | + | short int have_surface_tension; | 
| 296 |  | }; | 
| 297 |  |  | 
| 298 |  | #endif |