| 6 |  | * redistribute this software in source and binary code form, provided | 
| 7 |  | * that the following conditions are met: | 
| 8 |  | * | 
| 9 | < | * 1. Acknowledgement of the program authors must be made in any | 
| 10 | < | *    publication of scientific results based in part on use of the | 
| 11 | < | *    program.  An acceptable form of acknowledgement is citation of | 
| 12 | < | *    the article in which the program was described (Matthew | 
| 13 | < | *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher | 
| 14 | < | *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented | 
| 15 | < | *    Parallel Simulation Engine for Molecular Dynamics," | 
| 16 | < | *    J. Comput. Chem. 26, pp. 252-271 (2005)) | 
| 17 | < | * | 
| 18 | < | * 2. Redistributions of source code must retain the above copyright | 
| 9 | > | * 1. Redistributions of source code must retain the above copyright | 
| 10 |  | *    notice, this list of conditions and the following disclaimer. | 
| 11 |  | * | 
| 12 | < | * 3. Redistributions in binary form must reproduce the above copyright | 
| 12 | > | * 2. Redistributions in binary form must reproduce the above copyright | 
| 13 |  | *    notice, this list of conditions and the following disclaimer in the | 
| 14 |  | *    documentation and/or other materials provided with the | 
| 15 |  | *    distribution. | 
| 28 |  | * arising out of the use of or inability to use software, even if the | 
| 29 |  | * University of Notre Dame has been advised of the possibility of | 
| 30 |  | * such damages. | 
| 31 | + | * | 
| 32 | + | * SUPPORT OPEN SCIENCE!  If you use OpenMD or its source code in your | 
| 33 | + | * research, please cite the appropriate papers when you publish your | 
| 34 | + | * work.  Good starting points are: | 
| 35 | + | * | 
| 36 | + | * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). | 
| 37 | + | * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). | 
| 38 | + | * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). | 
| 39 | + | * [4]  Vardeman & Gezelter, in progress (2009). | 
| 40 |  | */ | 
| 41 |  |  | 
| 42 |  | #ifndef IO_PARAMCONSTRAINT_HPP | 
| 44 |  | #include <sstream> | 
| 45 |  | #include "utils/CaseConversion.hpp" | 
| 46 |  | #include "utils/StringTokenizer.hpp" | 
| 47 | < | namespace oopse { | 
| 47 | > | namespace OpenMD { | 
| 48 |  | /** | 
| 49 |  | * This class allows to recognize constraint predicates, so that they can be combined using | 
| 50 |  | * composition operators. Every constraint predicate must be derived from this class | 
| 181 |  |  | 
| 182 |  | struct EqualIgnoreCaseConstraint : public ParamConstraintFacade<EqualIgnoreCaseConstraint> { | 
| 183 |  |  | 
| 184 | < | EqualIgnoreCaseConstraint(std::string rhs) : rhs_(oopse::toUpperCopy(rhs)){ | 
| 184 | > | EqualIgnoreCaseConstraint(std::string rhs) : rhs_(OpenMD::toUpperCopy(rhs)){ | 
| 185 |  | std::stringstream iss; | 
| 186 |  | iss << "equal to (case insensitive) " << rhs; | 
| 187 |  | this->description_ = iss.str(); | 
| 188 |  | } | 
| 189 |  |  | 
| 190 |  | bool operator()( std::string data ) const { | 
| 191 | < | return oopse::toUpperCopy(data) == rhs_; | 
| 191 | > | return OpenMD::toUpperCopy(data) == rhs_; | 
| 192 |  | } | 
| 193 |  |  | 
| 194 |  | private: | 
| 196 |  | }; | 
| 197 |  |  | 
| 198 |  | struct ContainsConstraint :  public ParamConstraintFacade<EqualIgnoreCaseConstraint> { | 
| 199 | < | ContainsConstraint(std::string rhs) : rhs_(oopse::toUpperCopy(rhs)){ | 
| 199 | > | ContainsConstraint(std::string rhs) : rhs_(OpenMD::toUpperCopy(rhs)){ | 
| 200 |  | std::stringstream iss; | 
| 201 |  | iss << "contains " << rhs; | 
| 202 |  | this->description_ = iss.str(); | 
| 203 |  | } | 
| 204 |  |  | 
| 205 |  | bool operator()( std::string data ) const { | 
| 206 | < | oopse::StringTokenizer tokenizer(oopse::toUpperCopy(data),  " ,;|\t\n\r"); | 
| 206 | > | OpenMD::StringTokenizer tokenizer(OpenMD::toUpperCopy(data),  " ,;|\t\n\r"); | 
| 207 |  | while (tokenizer.hasMoreTokens()) { | 
| 208 |  | if (tokenizer.nextToken() == rhs_) { | 
| 209 |  | return true; |