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root/OpenMD/trunk/src/io/RestWriter.cpp

Comparing trunk/src/io/RestWriter.cpp (file contents):
Revision 1407 by cli2, Wed Jan 20 16:04:40 2010 UTC vs.
Revision 1879 by gezelter, Sun Jun 16 15:15:42 2013 UTC

#	Line 35 | Line 35
35		*
36		* [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
37		* [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
38	<	* [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008).
39	<	* [4]  Vardeman & Gezelter, in progress (2009).
38	>	* [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).
39	>	* [4]  Kuang & Gezelter,  J. Chem. Phys. 133, 164101 (2010).
40	>	* [5]  Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
41		*/
42
43
#	Line 77 | Line 78 | namespace OpenMD {
78
79
80		#ifdef IS_MPI
81	<	MPI_Status istatus;
81	>	MPI::Status istatus;
82		#endif
83
84		#ifndef IS_MPI
#	Line 147 | Line 148 | namespace OpenMD {
148		(*output_) << "#time\t";
149		(*output_) << buffer;
150
151	<	int nProc;
151	<	MPI_Comm_size(MPI_COMM_WORLD, &nProc);
151	>	int nProc = MPI::COMM_WORLD.Get_size();
152		for (int i = 1; i < nProc; ++i) {
153
154		// receive the length of the string buffer that was
155		// prepared by processor i
156
157		int recvLength;
158	<	MPI_Recv(&recvLength, 1, MPI_INT, i, 0, MPI_COMM_WORLD, &istatus);
158	>	MPI::COMM_WORLD.Recv(&recvLength, 1, MPI::INT, i, 0, istatus);
159		char* recvBuffer = new char[recvLength];
160		if (recvBuffer == NULL) {
161		} else {
162	<	MPI_Recv(recvBuffer, recvLength, MPI_CHAR, i, 0, MPI_COMM_WORLD,
163	<	&istatus);
162	>	MPI::COMM_WORLD.Recv(recvBuffer, recvLength, MPI::CHAR, i, 0,
163	>	istatus);
164		(*output_) << recvBuffer;
165		delete [] recvBuffer;
166		}
#	Line 168 | Line 168 | namespace OpenMD {
168		(*output_).flush();
169		} else {
170		int sendBufferLength = buffer.size() + 1;
171	<	MPI_Send(&sendBufferLength, 1, MPI_INT, masterNode, 0, MPI_COMM_WORLD);
172	<	MPI_Send((void *)buffer.c_str(), sendBufferLength, MPI_CHAR, masterNode,
173	<	0, MPI_COMM_WORLD);
171	>	MPI::COMM_WORLD.Send(&sendBufferLength, 1, MPI::INT, masterNode, 0);
172	>	MPI::COMM_WORLD.Send((void *)buffer.c_str(), sendBufferLength, MPI::CHAR,
173	>	masterNode, 0);
174		}
175
176		#endif // is_mpi
#	Line 180 | Line 180 | namespace OpenMD {
180		void RestWriter::writeRest(std::vector<std::map<int, Restraint::RealPair> > restInfo) {
181
182		#ifdef IS_MPI
183	<	MPI_Status istatus;
183	>	MPI::Status istatus;
184		#endif
185
186		#ifndef IS_MPI
#	Line 224 | Line 224 | namespace OpenMD {
224		(*output_) << buffer;
225
226		int nProc;
227	<	MPI_Comm_size(MPI_COMM_WORLD, &nProc);
227	>	nProc = MPI::COMM_WORLD.Get_size();
228		for (int i = 1; i < nProc; ++i) {
229
230		// receive the length of the string buffer that was
231		// prepared by processor i
232
233		int recvLength;
234	<	MPI_Recv(&recvLength, 1, MPI_INT, i, 0, MPI_COMM_WORLD, &istatus);
234	>	MPI::COMM_WORLD.Recv(&recvLength, 1, MPI::INT, i, 0, istatus);
235		char* recvBuffer = new char[recvLength];
236		if (recvBuffer == NULL) {
237		} else {
238	<	MPI_Recv(recvBuffer, recvLength, MPI_CHAR, i, 0, MPI_COMM_WORLD,
239	<	&istatus);
238	>	MPI::COMM_WORLD.Recv(recvBuffer, recvLength, MPI::CHAR, i, 0,
239	>	istatus);
240		(*output_) << recvBuffer;
241
242		delete [] recvBuffer;
#	Line 245 | Line 245 | namespace OpenMD {
245		(*output_).flush();
246		} else {
247		int sendBufferLength = buffer.size() + 1;
248	<	MPI_Send(&sendBufferLength, 1, MPI_INT, masterNode, 0, MPI_COMM_WORLD);
249	<	MPI_Send((void *)buffer.c_str(), sendBufferLength, MPI_CHAR, masterNode,
250	<	0, MPI_COMM_WORLD);
248	>	MPI::COMM_WORLD.Send(&sendBufferLength, 1, MPI::INT, masterNode, 0);
249	>	MPI::COMM_WORLD.Send((void *)buffer.c_str(), sendBufferLength,
250	>	MPI::CHAR, masterNode, 0);
251		}
252		#endif // is_mpi
253		}

Comparing trunk/src/io/RestWriter.cpp (property svn:keywords):
Revision 1407 by cli2, Wed Jan 20 16:04:40 2010 UTC vs.
Revision 1879 by gezelter, Sun Jun 16 15:15:42 2013 UTC

#	Line 0 | Line 1
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