| 1 | < | /* $ANTLR 2.7.7 (20080702): "MDTreeParser.g" -> "MDTreeParser.cpp"$ */ | 
| 1 | > | /* $ANTLR 2.7.7 (20121118): "MDTreeParser.g" -> "MDTreeParser.cpp"$ */ | 
| 2 |  | #include "MDTreeParser.hpp" | 
| 3 |  | #include <antlr/Token.hpp> | 
| 4 |  | #include <antlr/AST.hpp> | 
| 74 |  | _t = _retTree; | 
| 75 |  | break; | 
| 76 |  | } | 
| 77 | + | case RESTRAINT: | 
| 78 | + | { | 
| 79 | + | restraintblock(_t); | 
| 80 | + | _t = _retTree; | 
| 81 | + | break; | 
| 82 | + | } | 
| 83 | + | case FLUCQ: | 
| 84 | + | { | 
| 85 | + | flucqblock(_t); | 
| 86 | + | _t = _retTree; | 
| 87 | + | break; | 
| 88 | + | } | 
| 89 | + | case RNEMD: | 
| 90 | + | { | 
| 91 | + | rnemdblock(_t); | 
| 92 | + | _t = _retTree; | 
| 93 | + | break; | 
| 94 | + | } | 
| 95 | + | case MINIMIZER: | 
| 96 | + | { | 
| 97 | + | minimizerblock(_t); | 
| 98 | + | _t = _retTree; | 
| 99 | + | break; | 
| 100 | + | } | 
| 101 |  | default: | 
| 102 |  | { | 
| 103 |  | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 141 |  | ANTLR_USE_NAMESPACE(antlr)RefAST componentblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 142 |  |  | 
| 143 |  | try {      // for error handling | 
| 144 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t9 = _t; | 
| 144 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t10 = _t; | 
| 145 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp2_AST_in = _t; | 
| 146 |  | match(_t,COMPONENT); | 
| 147 |  | _t = _t->getFirstChild(); | 
| 148 | < | #line 62 "MDTreeParser.g" | 
| 148 | > | #line 72 "MDTreeParser.g" | 
| 149 |  | Component* currComponet = new Component(); blockStack.push(currComponet); | 
| 150 | < | #line 127 "MDTreeParser.cpp" | 
| 150 | > | #line 151 "MDTreeParser.cpp" | 
| 151 |  | { // ( ... )* | 
| 152 |  | for (;;) { | 
| 153 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 157 |  | _t = _retTree; | 
| 158 |  | } | 
| 159 |  | else { | 
| 160 | < | goto _loop11; | 
| 160 | > | goto _loop12; | 
| 161 |  | } | 
| 162 |  |  | 
| 163 |  | } | 
| 164 | < | _loop11:; | 
| 164 | > | _loop12:; | 
| 165 |  | } // ( ... )* | 
| 166 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp3_AST_in = _t; | 
| 167 |  | match(_t,ENDBLOCK); | 
| 168 |  | _t = _t->getNextSibling(); | 
| 169 | < | _t = __t9; | 
| 169 | > | _t = __t10; | 
| 170 |  | _t = _t->getNextSibling(); | 
| 171 | < | #line 64 "MDTreeParser.g" | 
| 171 | > | #line 74 "MDTreeParser.g" | 
| 172 |  | blockStack.top()->validate();blockStack.pop(); currConf->addComponent(currComponet); | 
| 173 | < | #line 150 "MDTreeParser.cpp" | 
| 173 | > | #line 174 "MDTreeParser.cpp" | 
| 174 |  | } | 
| 175 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 176 |  | reportError(ex); | 
| 184 |  | ANTLR_USE_NAMESPACE(antlr)RefAST moleculeblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 185 |  |  | 
| 186 |  | try {      // for error handling | 
| 187 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t17 = _t; | 
| 187 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t34 = _t; | 
| 188 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp4_AST_in = _t; | 
| 189 |  | match(_t,MOLECULE); | 
| 190 |  | _t = _t->getFirstChild(); | 
| 191 | < | #line 72 "MDTreeParser.g" | 
| 191 | > | #line 103 "MDTreeParser.g" | 
| 192 |  | MoleculeStamp* currMoleculeStamp = new MoleculeStamp(); blockStack.push(currMoleculeStamp); | 
| 193 | < | #line 170 "MDTreeParser.cpp" | 
| 193 | > | #line 194 "MDTreeParser.cpp" | 
| 194 |  | { // ( ... )* | 
| 195 |  | for (;;) { | 
| 196 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 200 |  | _t = _retTree; | 
| 201 |  | } | 
| 202 |  | else { | 
| 203 | < | goto _loop19; | 
| 203 | > | goto _loop36; | 
| 204 |  | } | 
| 205 |  |  | 
| 206 |  | } | 
| 207 | < | _loop19:; | 
| 207 | > | _loop36:; | 
| 208 |  | } // ( ... )* | 
| 209 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp5_AST_in = _t; | 
| 210 |  | match(_t,ENDBLOCK); | 
| 211 |  | _t = _t->getNextSibling(); | 
| 212 | < | _t = __t17; | 
| 212 | > | _t = __t34; | 
| 213 |  | _t = _t->getNextSibling(); | 
| 214 | < | #line 74 "MDTreeParser.g" | 
| 214 | > | #line 105 "MDTreeParser.g" | 
| 215 |  | blockStack.top()->validate(); blockStack.pop(); currConf->addMoleculeStamp(currMoleculeStamp); | 
| 216 | < | #line 193 "MDTreeParser.cpp" | 
| 216 | > | #line 217 "MDTreeParser.cpp" | 
| 217 |  | } | 
| 218 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 219 |  | reportError(ex); | 
| 227 |  | ANTLR_USE_NAMESPACE(antlr)RefAST zconstraintblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 228 |  |  | 
| 229 |  | try {      // for error handling | 
| 230 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t13 = _t; | 
| 230 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t14 = _t; | 
| 231 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp6_AST_in = _t; | 
| 232 |  | match(_t,ZCONSTRAINT); | 
| 233 |  | _t = _t->getFirstChild(); | 
| 234 | < | #line 67 "MDTreeParser.g" | 
| 234 | > | #line 77 "MDTreeParser.g" | 
| 235 |  | ZConsStamp* currZConsStamp = new ZConsStamp(); blockStack.push(currZConsStamp); | 
| 236 | < | #line 213 "MDTreeParser.cpp" | 
| 236 | > | #line 237 "MDTreeParser.cpp" | 
| 237 |  | { // ( ... )* | 
| 238 |  | for (;;) { | 
| 239 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 243 |  | _t = _retTree; | 
| 244 |  | } | 
| 245 |  | else { | 
| 246 | < | goto _loop15; | 
| 246 | > | goto _loop16; | 
| 247 |  | } | 
| 248 |  |  | 
| 249 |  | } | 
| 250 | < | _loop15:; | 
| 250 | > | _loop16:; | 
| 251 |  | } // ( ... )* | 
| 252 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp7_AST_in = _t; | 
| 253 |  | match(_t,ENDBLOCK); | 
| 254 |  | _t = _t->getNextSibling(); | 
| 255 | < | _t = __t13; | 
| 255 | > | _t = __t14; | 
| 256 |  | _t = _t->getNextSibling(); | 
| 257 | < | #line 69 "MDTreeParser.g" | 
| 257 | > | #line 79 "MDTreeParser.g" | 
| 258 |  | blockStack.top()->validate();blockStack.pop(); currConf->addZConsStamp(currZConsStamp); | 
| 259 | < | #line 236 "MDTreeParser.cpp" | 
| 259 | > | #line 260 "MDTreeParser.cpp" | 
| 260 | > | } | 
| 261 | > | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 262 | > | reportError(ex); | 
| 263 | > | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 264 | > | _t = _t->getNextSibling(); | 
| 265 | > | } | 
| 266 | > | _retTree = _t; | 
| 267 | > | } | 
| 268 | > |  | 
| 269 | > | void MDTreeParser::restraintblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 270 | > | ANTLR_USE_NAMESPACE(antlr)RefAST restraintblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 271 | > |  | 
| 272 | > | try {      // for error handling | 
| 273 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t18 = _t; | 
| 274 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp8_AST_in = _t; | 
| 275 | > | match(_t,RESTRAINT); | 
| 276 | > | _t = _t->getFirstChild(); | 
| 277 | > | #line 82 "MDTreeParser.g" | 
| 278 | > | RestraintStamp* currRestraintStamp = new RestraintStamp(); blockStack.push(currRestraintStamp); | 
| 279 | > | #line 280 "MDTreeParser.cpp" | 
| 280 | > | { // ( ... )* | 
| 281 | > | for (;;) { | 
| 282 | > | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 283 | > | _t = ASTNULL; | 
| 284 | > | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 285 | > | assignment(_t); | 
| 286 | > | _t = _retTree; | 
| 287 | > | } | 
| 288 | > | else { | 
| 289 | > | goto _loop20; | 
| 290 | > | } | 
| 291 | > |  | 
| 292 | > | } | 
| 293 | > | _loop20:; | 
| 294 | > | } // ( ... )* | 
| 295 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp9_AST_in = _t; | 
| 296 | > | match(_t,ENDBLOCK); | 
| 297 | > | _t = _t->getNextSibling(); | 
| 298 | > | _t = __t18; | 
| 299 | > | _t = _t->getNextSibling(); | 
| 300 | > | #line 84 "MDTreeParser.g" | 
| 301 | > | blockStack.top()->validate();blockStack.pop(); currConf->addRestraintStamp(currRestraintStamp); | 
| 302 | > | #line 303 "MDTreeParser.cpp" | 
| 303 | > | } | 
| 304 | > | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 305 | > | reportError(ex); | 
| 306 | > | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 307 | > | _t = _t->getNextSibling(); | 
| 308 | > | } | 
| 309 | > | _retTree = _t; | 
| 310 | > | } | 
| 311 | > |  | 
| 312 | > | void MDTreeParser::flucqblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 313 | > | ANTLR_USE_NAMESPACE(antlr)RefAST flucqblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 314 | > |  | 
| 315 | > | try {      // for error handling | 
| 316 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t22 = _t; | 
| 317 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp10_AST_in = _t; | 
| 318 | > | match(_t,FLUCQ); | 
| 319 | > | _t = _t->getFirstChild(); | 
| 320 | > | #line 87 "MDTreeParser.g" | 
| 321 | > | FluctuatingChargeParameters* flucQpars = new FluctuatingChargeParameters(); blockStack.push(flucQpars); | 
| 322 | > | #line 323 "MDTreeParser.cpp" | 
| 323 | > | { // ( ... )* | 
| 324 | > | for (;;) { | 
| 325 | > | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 326 | > | _t = ASTNULL; | 
| 327 | > | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 328 | > | assignment(_t); | 
| 329 | > | _t = _retTree; | 
| 330 | > | } | 
| 331 | > | else { | 
| 332 | > | goto _loop24; | 
| 333 | > | } | 
| 334 | > |  | 
| 335 | > | } | 
| 336 | > | _loop24:; | 
| 337 | > | } // ( ... )* | 
| 338 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp11_AST_in = _t; | 
| 339 | > | match(_t,ENDBLOCK); | 
| 340 | > | _t = _t->getNextSibling(); | 
| 341 | > | _t = __t22; | 
| 342 | > | _t = _t->getNextSibling(); | 
| 343 | > | #line 89 "MDTreeParser.g" | 
| 344 | > | blockStack.top()->validate();blockStack.pop(); currConf->addFluctuatingChargeParameters(flucQpars); | 
| 345 | > | #line 346 "MDTreeParser.cpp" | 
| 346 | > | } | 
| 347 | > | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 348 | > | reportError(ex); | 
| 349 | > | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 350 | > | _t = _t->getNextSibling(); | 
| 351 | > | } | 
| 352 | > | _retTree = _t; | 
| 353 | > | } | 
| 354 | > |  | 
| 355 | > | void MDTreeParser::rnemdblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 356 | > | ANTLR_USE_NAMESPACE(antlr)RefAST rnemdblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 357 | > |  | 
| 358 | > | try {      // for error handling | 
| 359 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t26 = _t; | 
| 360 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp12_AST_in = _t; | 
| 361 | > | match(_t,RNEMD); | 
| 362 | > | _t = _t->getFirstChild(); | 
| 363 | > | #line 92 "MDTreeParser.g" | 
| 364 | > | RNEMDParameters* rnemdPars = new RNEMDParameters(); blockStack.push(rnemdPars); | 
| 365 | > | #line 366 "MDTreeParser.cpp" | 
| 366 | > | { // ( ... )* | 
| 367 | > | for (;;) { | 
| 368 | > | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 369 | > | _t = ASTNULL; | 
| 370 | > | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 371 | > | assignment(_t); | 
| 372 | > | _t = _retTree; | 
| 373 | > | } | 
| 374 | > | else { | 
| 375 | > | goto _loop28; | 
| 376 | > | } | 
| 377 | > |  | 
| 378 | > | } | 
| 379 | > | _loop28:; | 
| 380 | > | } // ( ... )* | 
| 381 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp13_AST_in = _t; | 
| 382 | > | match(_t,ENDBLOCK); | 
| 383 | > | _t = _t->getNextSibling(); | 
| 384 | > | _t = __t26; | 
| 385 | > | _t = _t->getNextSibling(); | 
| 386 | > | #line 94 "MDTreeParser.g" | 
| 387 | > | blockStack.top()->validate();blockStack.pop(); currConf->addRNEMDParameters(rnemdPars); | 
| 388 | > | #line 389 "MDTreeParser.cpp" | 
| 389 | > | } | 
| 390 | > | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 391 | > | reportError(ex); | 
| 392 | > | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 393 | > | _t = _t->getNextSibling(); | 
| 394 | > | } | 
| 395 | > | _retTree = _t; | 
| 396 | > | } | 
| 397 | > |  | 
| 398 | > | void MDTreeParser::minimizerblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 399 | > | ANTLR_USE_NAMESPACE(antlr)RefAST minimizerblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 400 | > |  | 
| 401 | > | try {      // for error handling | 
| 402 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t30 = _t; | 
| 403 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp14_AST_in = _t; | 
| 404 | > | match(_t,MINIMIZER); | 
| 405 | > | _t = _t->getFirstChild(); | 
| 406 | > | #line 97 "MDTreeParser.g" | 
| 407 | > | MinimizerParameters* minimizerPars = new MinimizerParameters(); blockStack.push(minimizerPars); | 
| 408 | > | #line 409 "MDTreeParser.cpp" | 
| 409 | > | { // ( ... )* | 
| 410 | > | for (;;) { | 
| 411 | > | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 412 | > | _t = ASTNULL; | 
| 413 | > | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 414 | > | assignment(_t); | 
| 415 | > | _t = _retTree; | 
| 416 | > | } | 
| 417 | > | else { | 
| 418 | > | goto _loop32; | 
| 419 | > | } | 
| 420 | > |  | 
| 421 | > | } | 
| 422 | > | _loop32:; | 
| 423 | > | } // ( ... )* | 
| 424 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp15_AST_in = _t; | 
| 425 | > | match(_t,ENDBLOCK); | 
| 426 | > | _t = _t->getNextSibling(); | 
| 427 | > | _t = __t30; | 
| 428 | > | _t = _t->getNextSibling(); | 
| 429 | > | #line 99 "MDTreeParser.g" | 
| 430 | > | blockStack.top()->validate();blockStack.pop(); currConf->addMinimizerParameters(minimizerPars); | 
| 431 | > | #line 432 "MDTreeParser.cpp" | 
| 432 |  | } | 
| 433 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 434 |  | reportError(ex); | 
| 444 |  | ANTLR_USE_NAMESPACE(antlr)RefAST constant_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 445 |  | ANTLR_USE_NAMESPACE(antlr)RefAST str1 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 446 |  | ANTLR_USE_NAMESPACE(antlr)RefAST str2 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 447 | < | #line 47 "MDTreeParser.g" | 
| 447 | > | #line 50 "MDTreeParser.g" | 
| 448 |  |  | 
| 449 |  | int ival; | 
| 450 | < | RealType dval; | 
| 450 | > | RealType dval, x, y, z; | 
| 451 | > | Vector3d dvec; | 
| 452 |  |  | 
| 453 | < | #line 257 "MDTreeParser.cpp" | 
| 453 | > | #line 454 "MDTreeParser.cpp" | 
| 454 |  |  | 
| 455 |  | try {      // for error handling | 
| 456 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 461 |  | { | 
| 462 |  | ival=intConst(_t); | 
| 463 |  | _t = _retTree; | 
| 464 | < | #line 52 "MDTreeParser.g" | 
| 464 | > | #line 56 "MDTreeParser.g" | 
| 465 |  | blockStack.top()->assign(id->getText(), ival); | 
| 466 | < | #line 270 "MDTreeParser.cpp" | 
| 466 | > | #line 467 "MDTreeParser.cpp" | 
| 467 |  | break; | 
| 468 |  | } | 
| 469 |  | case NUM_FLOAT: | 
| 471 |  | { | 
| 472 |  | dval=floatConst(_t); | 
| 473 |  | _t = _retTree; | 
| 474 | < | #line 53 "MDTreeParser.g" | 
| 474 | > | #line 57 "MDTreeParser.g" | 
| 475 |  | blockStack.top()->assign(id->getText(), dval); | 
| 476 | < | #line 280 "MDTreeParser.cpp" | 
| 476 | > | #line 477 "MDTreeParser.cpp" | 
| 477 |  | break; | 
| 478 |  | } | 
| 479 | + | case LPAREN: | 
| 480 | + | { | 
| 481 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t8 = _t; | 
| 482 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp16_AST_in = _t; | 
| 483 | + | match(_t,LPAREN); | 
| 484 | + | _t = _t->getFirstChild(); | 
| 485 | + | x=doubleNumber(_t); | 
| 486 | + | _t = _retTree; | 
| 487 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp17_AST_in = _t; | 
| 488 | + | match(_t,COMMA); | 
| 489 | + | _t = _t->getNextSibling(); | 
| 490 | + | y=doubleNumber(_t); | 
| 491 | + | _t = _retTree; | 
| 492 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp18_AST_in = _t; | 
| 493 | + | match(_t,COMMA); | 
| 494 | + | _t = _t->getNextSibling(); | 
| 495 | + | z=doubleNumber(_t); | 
| 496 | + | _t = _retTree; | 
| 497 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp19_AST_in = _t; | 
| 498 | + | match(_t,RPAREN); | 
| 499 | + | _t = _t->getNextSibling(); | 
| 500 | + | _t = __t8; | 
| 501 | + | _t = _t->getNextSibling(); | 
| 502 | + | #line 59 "MDTreeParser.g" | 
| 503 | + | dvec.x() = x; | 
| 504 | + | dvec.y() = y; | 
| 505 | + | dvec.z() = z; | 
| 506 | + | blockStack.top()->assign(id->getText(), dvec); | 
| 507 | + |  | 
| 508 | + | #line 509 "MDTreeParser.cpp" | 
| 509 | + | break; | 
| 510 | + | } | 
| 511 |  | case ID: | 
| 512 |  | { | 
| 513 |  | str1 = _t; | 
| 514 |  | match(_t,ID); | 
| 515 |  | _t = _t->getNextSibling(); | 
| 516 | < | #line 54 "MDTreeParser.g" | 
| 516 | > | #line 64 "MDTreeParser.g" | 
| 517 |  | blockStack.top()->assign(id->getText(), str1->getText()); | 
| 518 | < | #line 290 "MDTreeParser.cpp" | 
| 518 | > | #line 519 "MDTreeParser.cpp" | 
| 519 |  | break; | 
| 520 |  | } | 
| 521 |  | case StringLiteral: | 
| 523 |  | str2 = _t; | 
| 524 |  | match(_t,StringLiteral); | 
| 525 |  | _t = _t->getNextSibling(); | 
| 526 | < | #line 55 "MDTreeParser.g" | 
| 526 | > | #line 65 "MDTreeParser.g" | 
| 527 |  | std::string s =  str2->getText(); | 
| 528 |  | s = s.substr(1, s.length()-2); | 
| 529 |  | blockStack.top()->assign(id->getText(),s); | 
| 530 |  |  | 
| 531 | < | #line 303 "MDTreeParser.cpp" | 
| 531 | > | #line 532 "MDTreeParser.cpp" | 
| 532 |  | break; | 
| 533 |  | } | 
| 534 |  | default: | 
| 546 |  | } | 
| 547 |  |  | 
| 548 |  | int  MDTreeParser::intConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 549 | < | #line 262 "MDTreeParser.g" | 
| 549 | > | #line 296 "MDTreeParser.g" | 
| 550 |  | int ival; | 
| 551 | < | #line 323 "MDTreeParser.cpp" | 
| 551 | > | #line 552 "MDTreeParser.cpp" | 
| 552 |  | ANTLR_USE_NAMESPACE(antlr)RefAST intConst_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 553 |  | ANTLR_USE_NAMESPACE(antlr)RefAST i1 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 554 |  | ANTLR_USE_NAMESPACE(antlr)RefAST i2 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 562 |  | i1 = _t; | 
| 563 |  | match(_t,NUM_INT); | 
| 564 |  | _t = _t->getNextSibling(); | 
| 565 | < | #line 263 "MDTreeParser.g" | 
| 565 | > | #line 297 "MDTreeParser.g" | 
| 566 |  | ival = lexi_cast<int>(i1->getText()); | 
| 567 | < | #line 339 "MDTreeParser.cpp" | 
| 567 | > | #line 568 "MDTreeParser.cpp" | 
| 568 |  | break; | 
| 569 |  | } | 
| 570 |  | case NUM_LONG: | 
| 572 |  | i2 = _t; | 
| 573 |  | match(_t,NUM_LONG); | 
| 574 |  | _t = _t->getNextSibling(); | 
| 575 | < | #line 264 "MDTreeParser.g" | 
| 575 | > | #line 298 "MDTreeParser.g" | 
| 576 |  | ival = lexi_cast<int>(i2->getText()); | 
| 577 | < | #line 349 "MDTreeParser.cpp" | 
| 577 | > | #line 578 "MDTreeParser.cpp" | 
| 578 |  | break; | 
| 579 |  | } | 
| 580 |  | default: | 
| 593 |  | } | 
| 594 |  |  | 
| 595 |  | RealType  MDTreeParser::floatConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 596 | < | #line 276 "MDTreeParser.g" | 
| 596 | > | #line 308 "MDTreeParser.g" | 
| 597 |  | RealType dval; | 
| 598 | < | #line 370 "MDTreeParser.cpp" | 
| 598 | > | #line 599 "MDTreeParser.cpp" | 
| 599 |  | ANTLR_USE_NAMESPACE(antlr)RefAST floatConst_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 600 |  | ANTLR_USE_NAMESPACE(antlr)RefAST d1 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 601 |  | ANTLR_USE_NAMESPACE(antlr)RefAST d2 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 609 |  | d1 = _t; | 
| 610 |  | match(_t,NUM_FLOAT); | 
| 611 |  | _t = _t->getNextSibling(); | 
| 612 | < | #line 277 "MDTreeParser.g" | 
| 612 | > | #line 309 "MDTreeParser.g" | 
| 613 |  | dval = lexi_cast<RealType>(d1->getText()); | 
| 614 | < | #line 386 "MDTreeParser.cpp" | 
| 614 | > | #line 615 "MDTreeParser.cpp" | 
| 615 |  | break; | 
| 616 |  | } | 
| 617 |  | case NUM_DOUBLE: | 
| 619 |  | d2 = _t; | 
| 620 |  | match(_t,NUM_DOUBLE); | 
| 621 |  | _t = _t->getNextSibling(); | 
| 622 | < | #line 278 "MDTreeParser.g" | 
| 622 | > | #line 310 "MDTreeParser.g" | 
| 623 |  | dval = lexi_cast<RealType>(d2->getText()); | 
| 624 | < | #line 396 "MDTreeParser.cpp" | 
| 624 | > | #line 625 "MDTreeParser.cpp" | 
| 625 | > | break; | 
| 626 | > | } | 
| 627 | > | default: | 
| 628 | > | { | 
| 629 | > | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 630 | > | } | 
| 631 | > | } | 
| 632 | > | } | 
| 633 | > | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 634 | > | reportError(ex); | 
| 635 | > | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 636 | > | _t = _t->getNextSibling(); | 
| 637 | > | } | 
| 638 | > | _retTree = _t; | 
| 639 | > | return dval; | 
| 640 | > | } | 
| 641 | > |  | 
| 642 | > | RealType  MDTreeParser::doubleNumber(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 643 | > | #line 302 "MDTreeParser.g" | 
| 644 | > | RealType dval; | 
| 645 | > | #line 646 "MDTreeParser.cpp" | 
| 646 | > | ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumber_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 647 | > | ANTLR_USE_NAMESPACE(antlr)RefAST ic = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 648 | > | ANTLR_USE_NAMESPACE(antlr)RefAST fc = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 649 | > |  | 
| 650 | > | try {      // for error handling | 
| 651 | > | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 652 | > | _t = ASTNULL; | 
| 653 | > | switch ( _t->getType()) { | 
| 654 | > | case NUM_INT: | 
| 655 | > | case NUM_LONG: | 
| 656 | > | { | 
| 657 | > | ic = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 658 | > | intConst(_t); | 
| 659 | > | _t = _retTree; | 
| 660 | > | #line 303 "MDTreeParser.g" | 
| 661 | > | dval = lexi_cast<RealType>(ic->getText()); | 
| 662 | > | #line 663 "MDTreeParser.cpp" | 
| 663 |  | break; | 
| 664 |  | } | 
| 665 | + | case NUM_FLOAT: | 
| 666 | + | case NUM_DOUBLE: | 
| 667 | + | { | 
| 668 | + | fc = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 669 | + | floatConst(_t); | 
| 670 | + | _t = _retTree; | 
| 671 | + | #line 304 "MDTreeParser.g" | 
| 672 | + | dval = lexi_cast<RealType>(fc->getText()); | 
| 673 | + | #line 674 "MDTreeParser.cpp" | 
| 674 | + | break; | 
| 675 | + | } | 
| 676 |  | default: | 
| 677 |  | { | 
| 678 |  | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 765 |  |  | 
| 766 |  | void MDTreeParser::atomblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 767 |  | ANTLR_USE_NAMESPACE(antlr)RefAST atomblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 768 | < | #line 88 "MDTreeParser.g" | 
| 768 | > | #line 119 "MDTreeParser.g" | 
| 769 |  |  | 
| 770 |  | int index; | 
| 771 |  |  | 
| 772 | < | #line 495 "MDTreeParser.cpp" | 
| 772 | > | #line 773 "MDTreeParser.cpp" | 
| 773 |  |  | 
| 774 |  | try {      // for error handling | 
| 775 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t22 = _t; | 
| 776 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp8_AST_in = _t; | 
| 775 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t39 = _t; | 
| 776 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp20_AST_in = _t; | 
| 777 |  | match(_t,ATOM); | 
| 778 |  | _t = _t->getFirstChild(); | 
| 779 |  | index=intConst(_t); | 
| 780 |  | _t = _retTree; | 
| 781 | < | #line 92 "MDTreeParser.g" | 
| 781 | > | #line 123 "MDTreeParser.g" | 
| 782 |  | AtomStamp* currAtomStamp = new AtomStamp(index); blockStack.push(currAtomStamp); | 
| 783 | < | #line 506 "MDTreeParser.cpp" | 
| 783 | > | #line 784 "MDTreeParser.cpp" | 
| 784 |  | { // ( ... )* | 
| 785 |  | for (;;) { | 
| 786 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 790 |  | _t = _retTree; | 
| 791 |  | } | 
| 792 |  | else { | 
| 793 | < | goto _loop24; | 
| 793 | > | goto _loop41; | 
| 794 |  | } | 
| 795 |  |  | 
| 796 |  | } | 
| 797 | < | _loop24:; | 
| 797 | > | _loop41:; | 
| 798 |  | } // ( ... )* | 
| 799 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp9_AST_in = _t; | 
| 799 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp21_AST_in = _t; | 
| 800 |  | match(_t,ENDBLOCK); | 
| 801 |  | _t = _t->getNextSibling(); | 
| 802 | < | _t = __t22; | 
| 802 | > | _t = __t39; | 
| 803 |  | _t = _t->getNextSibling(); | 
| 804 | < | #line 94 "MDTreeParser.g" | 
| 804 | > | #line 125 "MDTreeParser.g" | 
| 805 |  |  | 
| 806 |  | blockStack.top()->validate(); | 
| 807 |  | blockStack.pop(); | 
| 808 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 809 |  | currMoleculeStamp->addAtomStamp(currAtomStamp); | 
| 810 |  |  | 
| 811 | < | #line 534 "MDTreeParser.cpp" | 
| 811 | > | #line 812 "MDTreeParser.cpp" | 
| 812 |  | } | 
| 813 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 814 |  | reportError(ex); | 
| 822 |  | ANTLR_USE_NAMESPACE(antlr)RefAST bondblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 823 |  |  | 
| 824 |  | try {      // for error handling | 
| 825 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t29 = _t; | 
| 826 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp10_AST_in = _t; | 
| 825 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t46 = _t; | 
| 826 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp22_AST_in = _t; | 
| 827 |  | match(_t,BOND); | 
| 828 |  | _t = _t->getFirstChild(); | 
| 829 | < | #line 114 "MDTreeParser.g" | 
| 829 | > | #line 145 "MDTreeParser.g" | 
| 830 |  | BondStamp* currBondStamp = new BondStamp(); blockStack.push(currBondStamp); | 
| 831 | < | #line 554 "MDTreeParser.cpp" | 
| 831 | > | #line 832 "MDTreeParser.cpp" | 
| 832 |  | { // ( ... )* | 
| 833 |  | for (;;) { | 
| 834 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 838 |  | _t = _retTree; | 
| 839 |  | } | 
| 840 |  | else { | 
| 841 | < | goto _loop31; | 
| 841 | > | goto _loop48; | 
| 842 |  | } | 
| 843 |  |  | 
| 844 |  | } | 
| 845 | < | _loop31:; | 
| 845 | > | _loop48:; | 
| 846 |  | } // ( ... )* | 
| 847 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp11_AST_in = _t; | 
| 847 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp23_AST_in = _t; | 
| 848 |  | match(_t,ENDBLOCK); | 
| 849 |  | _t = _t->getNextSibling(); | 
| 850 | < | _t = __t29; | 
| 850 | > | _t = __t46; | 
| 851 |  | _t = _t->getNextSibling(); | 
| 852 | < | #line 116 "MDTreeParser.g" | 
| 852 | > | #line 147 "MDTreeParser.g" | 
| 853 |  |  | 
| 854 |  | blockStack.pop(); | 
| 855 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 856 |  | currMoleculeStamp->addBondStamp(currBondStamp); | 
| 857 |  |  | 
| 858 | < | #line 581 "MDTreeParser.cpp" | 
| 858 | > | #line 859 "MDTreeParser.cpp" | 
| 859 |  | } | 
| 860 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 861 |  | reportError(ex); | 
| 869 |  | ANTLR_USE_NAMESPACE(antlr)RefAST bendblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 870 |  |  | 
| 871 |  | try {      // for error handling | 
| 872 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t35 = _t; | 
| 873 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp12_AST_in = _t; | 
| 872 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t52 = _t; | 
| 873 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp24_AST_in = _t; | 
| 874 |  | match(_t,BEND); | 
| 875 |  | _t = _t->getFirstChild(); | 
| 876 | < | #line 132 "MDTreeParser.g" | 
| 876 | > | #line 163 "MDTreeParser.g" | 
| 877 |  | BendStamp* currBendStamp = new BendStamp(); blockStack.push(currBendStamp); | 
| 878 | < | #line 601 "MDTreeParser.cpp" | 
| 878 | > | #line 879 "MDTreeParser.cpp" | 
| 879 |  | { // ( ... )* | 
| 880 |  | for (;;) { | 
| 881 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 885 |  | _t = _retTree; | 
| 886 |  | } | 
| 887 |  | else { | 
| 888 | < | goto _loop37; | 
| 888 | > | goto _loop54; | 
| 889 |  | } | 
| 890 |  |  | 
| 891 |  | } | 
| 892 | < | _loop37:; | 
| 892 | > | _loop54:; | 
| 893 |  | } // ( ... )* | 
| 894 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp13_AST_in = _t; | 
| 894 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp25_AST_in = _t; | 
| 895 |  | match(_t,ENDBLOCK); | 
| 896 |  | _t = _t->getNextSibling(); | 
| 897 | < | _t = __t35; | 
| 897 | > | _t = __t52; | 
| 898 |  | _t = _t->getNextSibling(); | 
| 899 | < | #line 134 "MDTreeParser.g" | 
| 899 | > | #line 165 "MDTreeParser.g" | 
| 900 |  |  | 
| 901 |  | blockStack.top()->validate(); | 
| 902 |  | blockStack.pop(); | 
| 903 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 904 |  | currMoleculeStamp->addBendStamp(currBendStamp); | 
| 905 |  |  | 
| 906 | < | #line 629 "MDTreeParser.cpp" | 
| 906 | > | #line 907 "MDTreeParser.cpp" | 
| 907 |  | } | 
| 908 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 909 |  | reportError(ex); | 
| 917 |  | ANTLR_USE_NAMESPACE(antlr)RefAST torsionblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 918 |  |  | 
| 919 |  | try {      // for error handling | 
| 920 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t41 = _t; | 
| 921 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp14_AST_in = _t; | 
| 920 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t58 = _t; | 
| 921 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp26_AST_in = _t; | 
| 922 |  | match(_t,TORSION); | 
| 923 |  | _t = _t->getFirstChild(); | 
| 924 | < | #line 151 "MDTreeParser.g" | 
| 924 | > | #line 182 "MDTreeParser.g" | 
| 925 |  | TorsionStamp* currTorsionStamp = new TorsionStamp(); blockStack.push(currTorsionStamp); | 
| 926 | < | #line 649 "MDTreeParser.cpp" | 
| 926 | > | #line 927 "MDTreeParser.cpp" | 
| 927 |  | { // ( ... )* | 
| 928 |  | for (;;) { | 
| 929 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 933 |  | _t = _retTree; | 
| 934 |  | } | 
| 935 |  | else { | 
| 936 | < | goto _loop43; | 
| 936 | > | goto _loop60; | 
| 937 |  | } | 
| 938 |  |  | 
| 939 |  | } | 
| 940 | < | _loop43:; | 
| 940 | > | _loop60:; | 
| 941 |  | } // ( ... )* | 
| 942 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp15_AST_in = _t; | 
| 942 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp27_AST_in = _t; | 
| 943 |  | match(_t,ENDBLOCK); | 
| 944 |  | _t = _t->getNextSibling(); | 
| 945 | < | _t = __t41; | 
| 945 | > | _t = __t58; | 
| 946 |  | _t = _t->getNextSibling(); | 
| 947 | < | #line 153 "MDTreeParser.g" | 
| 947 | > | #line 184 "MDTreeParser.g" | 
| 948 |  |  | 
| 949 |  | blockStack.top()->validate(); | 
| 950 |  | blockStack.pop(); | 
| 951 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 952 |  | currMoleculeStamp->addTorsionStamp(currTorsionStamp); | 
| 953 |  |  | 
| 954 | < | #line 677 "MDTreeParser.cpp" | 
| 954 | > | #line 955 "MDTreeParser.cpp" | 
| 955 |  | } | 
| 956 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 957 |  | reportError(ex); | 
| 965 |  | ANTLR_USE_NAMESPACE(antlr)RefAST inversionblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 966 |  |  | 
| 967 |  | try {      // for error handling | 
| 968 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t47 = _t; | 
| 969 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp16_AST_in = _t; | 
| 968 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t64 = _t; | 
| 969 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp28_AST_in = _t; | 
| 970 |  | match(_t,INVERSION); | 
| 971 |  | _t = _t->getFirstChild(); | 
| 972 | < | #line 170 "MDTreeParser.g" | 
| 972 | > | #line 201 "MDTreeParser.g" | 
| 973 |  | InversionStamp* currInversionStamp = new InversionStamp(); blockStack.push(currInversionStamp); | 
| 974 | < | #line 697 "MDTreeParser.cpp" | 
| 974 | > | #line 975 "MDTreeParser.cpp" | 
| 975 |  | { // ( ... )* | 
| 976 |  | for (;;) { | 
| 977 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 978 |  | _t = ASTNULL; | 
| 979 | < | if ((_t->getType() == CENTER || _t->getType() == ASSIGNEQUAL)) { | 
| 979 | > | if ((_t->getType() == CENTER || _t->getType() == SATELLITES || _t->getType() == ASSIGNEQUAL)) { | 
| 980 |  | inversionstatement(_t); | 
| 981 |  | _t = _retTree; | 
| 982 |  | } | 
| 983 |  | else { | 
| 984 | < | goto _loop49; | 
| 984 | > | goto _loop66; | 
| 985 |  | } | 
| 986 |  |  | 
| 987 |  | } | 
| 988 | < | _loop49:; | 
| 988 | > | _loop66:; | 
| 989 |  | } // ( ... )* | 
| 990 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp17_AST_in = _t; | 
| 990 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp29_AST_in = _t; | 
| 991 |  | match(_t,ENDBLOCK); | 
| 992 |  | _t = _t->getNextSibling(); | 
| 993 | < | _t = __t47; | 
| 993 | > | _t = __t64; | 
| 994 |  | _t = _t->getNextSibling(); | 
| 995 | < | #line 172 "MDTreeParser.g" | 
| 995 | > | #line 203 "MDTreeParser.g" | 
| 996 |  |  | 
| 997 |  | blockStack.top()->validate(); | 
| 998 |  | blockStack.pop(); | 
| 999 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1000 |  | currMoleculeStamp->addInversionStamp(currInversionStamp); | 
| 1001 |  |  | 
| 1002 | < | #line 725 "MDTreeParser.cpp" | 
| 1002 | > | #line 1003 "MDTreeParser.cpp" | 
| 1003 |  | } | 
| 1004 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1005 |  | reportError(ex); | 
| 1011 |  |  | 
| 1012 |  | void MDTreeParser::rigidbodyblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1013 |  | ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodyblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1014 | < | #line 189 "MDTreeParser.g" | 
| 1014 | > | #line 222 "MDTreeParser.g" | 
| 1015 |  |  | 
| 1016 |  | int index; | 
| 1017 |  |  | 
| 1018 | < | #line 741 "MDTreeParser.cpp" | 
| 1018 | > | #line 1019 "MDTreeParser.cpp" | 
| 1019 |  |  | 
| 1020 |  | try {      // for error handling | 
| 1021 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t53 = _t; | 
| 1022 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp18_AST_in = _t; | 
| 1021 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t71 = _t; | 
| 1022 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp30_AST_in = _t; | 
| 1023 |  | match(_t,RIGIDBODY); | 
| 1024 |  | _t = _t->getFirstChild(); | 
| 1025 |  | index=intConst(_t); | 
| 1026 |  | _t = _retTree; | 
| 1027 | < | #line 193 "MDTreeParser.g" | 
| 1027 | > | #line 226 "MDTreeParser.g" | 
| 1028 |  | RigidBodyStamp* currRigidBodyStamp = new RigidBodyStamp(index); blockStack.push(currRigidBodyStamp); | 
| 1029 | < | #line 752 "MDTreeParser.cpp" | 
| 1029 | > | #line 1030 "MDTreeParser.cpp" | 
| 1030 |  | { // ( ... )* | 
| 1031 |  | for (;;) { | 
| 1032 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1036 |  | _t = _retTree; | 
| 1037 |  | } | 
| 1038 |  | else { | 
| 1039 | < | goto _loop55; | 
| 1039 | > | goto _loop73; | 
| 1040 |  | } | 
| 1041 |  |  | 
| 1042 |  | } | 
| 1043 | < | _loop55:; | 
| 1043 | > | _loop73:; | 
| 1044 |  | } // ( ... )* | 
| 1045 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp19_AST_in = _t; | 
| 1045 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp31_AST_in = _t; | 
| 1046 |  | match(_t,ENDBLOCK); | 
| 1047 |  | _t = _t->getNextSibling(); | 
| 1048 | < | _t = __t53; | 
| 1048 | > | _t = __t71; | 
| 1049 |  | _t = _t->getNextSibling(); | 
| 1050 | < | #line 195 "MDTreeParser.g" | 
| 1050 | > | #line 228 "MDTreeParser.g" | 
| 1051 |  |  | 
| 1052 |  | blockStack.top()->validate(); | 
| 1053 |  | blockStack.pop(); | 
| 1054 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1055 |  | currMoleculeStamp->addRigidBodyStamp(currRigidBodyStamp); | 
| 1056 |  |  | 
| 1057 | < | #line 780 "MDTreeParser.cpp" | 
| 1057 | > | #line 1058 "MDTreeParser.cpp" | 
| 1058 |  | } | 
| 1059 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1060 |  | reportError(ex); | 
| 1068 |  | ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1069 |  |  | 
| 1070 |  | try {      // for error handling | 
| 1071 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t59 = _t; | 
| 1072 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp20_AST_in = _t; | 
| 1071 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t77 = _t; | 
| 1072 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp32_AST_in = _t; | 
| 1073 |  | match(_t,CUTOFFGROUP); | 
| 1074 |  | _t = _t->getFirstChild(); | 
| 1075 | < | #line 212 "MDTreeParser.g" | 
| 1075 | > | #line 245 "MDTreeParser.g" | 
| 1076 |  | CutoffGroupStamp* currCutoffGroupStamp = new CutoffGroupStamp(); blockStack.push(currCutoffGroupStamp); | 
| 1077 | < | #line 800 "MDTreeParser.cpp" | 
| 1077 | > | #line 1078 "MDTreeParser.cpp" | 
| 1078 |  | { // ( ... )* | 
| 1079 |  | for (;;) { | 
| 1080 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1084 |  | _t = _retTree; | 
| 1085 |  | } | 
| 1086 |  | else { | 
| 1087 | < | goto _loop61; | 
| 1087 | > | goto _loop79; | 
| 1088 |  | } | 
| 1089 |  |  | 
| 1090 |  | } | 
| 1091 | < | _loop61:; | 
| 1091 | > | _loop79:; | 
| 1092 |  | } // ( ... )* | 
| 1093 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp21_AST_in = _t; | 
| 1093 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp33_AST_in = _t; | 
| 1094 |  | match(_t,ENDBLOCK); | 
| 1095 |  | _t = _t->getNextSibling(); | 
| 1096 | < | _t = __t59; | 
| 1096 | > | _t = __t77; | 
| 1097 |  | _t = _t->getNextSibling(); | 
| 1098 | < | #line 214 "MDTreeParser.g" | 
| 1098 | > | #line 247 "MDTreeParser.g" | 
| 1099 |  |  | 
| 1100 |  | blockStack.top()->validate(); | 
| 1101 |  | blockStack.pop(); | 
| 1102 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1103 |  | currMoleculeStamp->addCutoffGroupStamp(currCutoffGroupStamp); | 
| 1104 |  |  | 
| 1105 | < | #line 828 "MDTreeParser.cpp" | 
| 1105 | > | #line 1106 "MDTreeParser.cpp" | 
| 1106 |  | } | 
| 1107 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1108 |  | reportError(ex); | 
| 1114 |  |  | 
| 1115 |  | void MDTreeParser::fragmentblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1116 |  | ANTLR_USE_NAMESPACE(antlr)RefAST fragmentblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1117 | < | #line 231 "MDTreeParser.g" | 
| 1117 | > | #line 264 "MDTreeParser.g" | 
| 1118 |  | int ival; | 
| 1119 | < | #line 842 "MDTreeParser.cpp" | 
| 1119 | > | #line 1120 "MDTreeParser.cpp" | 
| 1120 |  |  | 
| 1121 |  | try {      // for error handling | 
| 1122 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t65 = _t; | 
| 1123 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp22_AST_in = _t; | 
| 1122 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t83 = _t; | 
| 1123 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp34_AST_in = _t; | 
| 1124 |  | match(_t,FRAGMENT); | 
| 1125 |  | _t = _t->getFirstChild(); | 
| 1126 |  | ival=intConst(_t); | 
| 1127 |  | _t = _retTree; | 
| 1128 | < | #line 232 "MDTreeParser.g" | 
| 1128 | > | #line 265 "MDTreeParser.g" | 
| 1129 |  | FragmentStamp* currFragmentStamp = new FragmentStamp(ival); blockStack.push(currFragmentStamp); | 
| 1130 | < | #line 853 "MDTreeParser.cpp" | 
| 1130 | > | #line 1131 "MDTreeParser.cpp" | 
| 1131 |  | { // ( ... )* | 
| 1132 |  | for (;;) { | 
| 1133 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1137 |  | _t = _retTree; | 
| 1138 |  | } | 
| 1139 |  | else { | 
| 1140 | < | goto _loop67; | 
| 1140 | > | goto _loop85; | 
| 1141 |  | } | 
| 1142 |  |  | 
| 1143 |  | } | 
| 1144 | < | _loop67:; | 
| 1144 | > | _loop85:; | 
| 1145 |  | } // ( ... )* | 
| 1146 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp23_AST_in = _t; | 
| 1146 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp35_AST_in = _t; | 
| 1147 |  | match(_t,ENDBLOCK); | 
| 1148 |  | _t = _t->getNextSibling(); | 
| 1149 | < | _t = __t65; | 
| 1149 | > | _t = __t83; | 
| 1150 |  | _t = _t->getNextSibling(); | 
| 1151 | < | #line 234 "MDTreeParser.g" | 
| 1151 | > | #line 267 "MDTreeParser.g" | 
| 1152 |  |  | 
| 1153 |  | blockStack.top()->validate(); | 
| 1154 |  | blockStack.pop(); | 
| 1155 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1156 |  | currMoleculeStamp->addFragmentStamp(currFragmentStamp); | 
| 1157 |  |  | 
| 1158 | < | #line 881 "MDTreeParser.cpp" | 
| 1158 | > | #line 1159 "MDTreeParser.cpp" | 
| 1159 |  | } | 
| 1160 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1161 |  | reportError(ex); | 
| 1167 |  |  | 
| 1168 |  | void MDTreeParser::atomstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1169 |  | ANTLR_USE_NAMESPACE(antlr)RefAST atomstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1170 | < | #line 102 "MDTreeParser.g" | 
| 1170 | > | #line 133 "MDTreeParser.g" | 
| 1171 |  |  | 
| 1172 |  | vector<RealType> dvec; | 
| 1173 |  | AtomStamp* currAtomStamp =  static_cast<AtomStamp*>(blockStack.top()); | 
| 1174 |  |  | 
| 1175 |  |  | 
| 1176 | < | #line 899 "MDTreeParser.cpp" | 
| 1176 | > | #line 1177 "MDTreeParser.cpp" | 
| 1177 |  |  | 
| 1178 |  | try {      // for error handling | 
| 1179 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1187 |  | } | 
| 1188 |  | case POSITION: | 
| 1189 |  | { | 
| 1190 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t26 = _t; | 
| 1191 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp24_AST_in = _t; | 
| 1190 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t43 = _t; | 
| 1191 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp36_AST_in = _t; | 
| 1192 |  | match(_t,POSITION); | 
| 1193 |  | _t = _t->getFirstChild(); | 
| 1194 |  | dvec=doubleNumberTuple(_t); | 
| 1195 |  | _t = _retTree; | 
| 1196 | < | _t = __t26; | 
| 1196 | > | _t = __t43; | 
| 1197 |  | _t = _t->getNextSibling(); | 
| 1198 | < | #line 109 "MDTreeParser.g" | 
| 1198 | > | #line 140 "MDTreeParser.g" | 
| 1199 |  | currAtomStamp->setPosition(dvec); | 
| 1200 | < | #line 923 "MDTreeParser.cpp" | 
| 1200 | > | #line 1201 "MDTreeParser.cpp" | 
| 1201 |  | break; | 
| 1202 |  | } | 
| 1203 |  | case ORIENTATION: | 
| 1204 |  | { | 
| 1205 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t27 = _t; | 
| 1206 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp25_AST_in = _t; | 
| 1205 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t44 = _t; | 
| 1206 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp37_AST_in = _t; | 
| 1207 |  | match(_t,ORIENTATION); | 
| 1208 |  | _t = _t->getFirstChild(); | 
| 1209 |  | dvec=doubleNumberTuple(_t); | 
| 1210 |  | _t = _retTree; | 
| 1211 | < | _t = __t27; | 
| 1211 | > | _t = __t44; | 
| 1212 |  | _t = _t->getNextSibling(); | 
| 1213 | < | #line 110 "MDTreeParser.g" | 
| 1213 | > | #line 141 "MDTreeParser.g" | 
| 1214 |  | currAtomStamp->setOrientation(dvec); | 
| 1215 | < | #line 938 "MDTreeParser.cpp" | 
| 1215 | > | #line 1216 "MDTreeParser.cpp" | 
| 1216 |  | break; | 
| 1217 |  | } | 
| 1218 |  | default: | 
| 1230 |  | } | 
| 1231 |  |  | 
| 1232 |  | vector<RealType>  MDTreeParser::doubleNumberTuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1233 | < | #line 247 "MDTreeParser.g" | 
| 1233 | > | #line 280 "MDTreeParser.g" | 
| 1234 |  | vector<RealType> dvec; | 
| 1235 | < | #line 958 "MDTreeParser.cpp" | 
| 1235 | > | #line 1236 "MDTreeParser.cpp" | 
| 1236 |  | ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumberTuple_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1237 | < | #line 247 "MDTreeParser.g" | 
| 1237 | > | #line 280 "MDTreeParser.g" | 
| 1238 |  |  | 
| 1239 |  | RealType dval; | 
| 1240 |  |  | 
| 1241 | < | #line 964 "MDTreeParser.cpp" | 
| 1241 | > | #line 1242 "MDTreeParser.cpp" | 
| 1242 |  |  | 
| 1243 |  | try {      // for error handling | 
| 1244 |  | { // ( ... )+ | 
| 1245 | < | int _cnt71=0; | 
| 1245 | > | int _cnt89=0; | 
| 1246 |  | for (;;) { | 
| 1247 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1248 |  | _t = ASTNULL; | 
| 1249 |  | if (((_t->getType() >= NUM_INT && _t->getType() <= NUM_DOUBLE))) { | 
| 1250 |  | dval=doubleNumber(_t); | 
| 1251 |  | _t = _retTree; | 
| 1252 | < | #line 251 "MDTreeParser.g" | 
| 1252 | > | #line 284 "MDTreeParser.g" | 
| 1253 |  | dvec.push_back(dval); | 
| 1254 | < | #line 977 "MDTreeParser.cpp" | 
| 1254 | > | #line 1255 "MDTreeParser.cpp" | 
| 1255 |  | } | 
| 1256 |  | else { | 
| 1257 | < | if ( _cnt71>=1 ) { goto _loop71; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} | 
| 1257 | > | if ( _cnt89>=1 ) { goto _loop89; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} | 
| 1258 |  | } | 
| 1259 |  |  | 
| 1260 | < | _cnt71++; | 
| 1260 | > | _cnt89++; | 
| 1261 |  | } | 
| 1262 | < | _loop71:; | 
| 1262 | > | _loop89:; | 
| 1263 |  | }  // ( ... )+ | 
| 1264 |  | } | 
| 1265 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1273 |  |  | 
| 1274 |  | void MDTreeParser::bondstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1275 |  | ANTLR_USE_NAMESPACE(antlr)RefAST bondstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1276 | < | #line 123 "MDTreeParser.g" | 
| 1276 | > | #line 154 "MDTreeParser.g" | 
| 1277 |  |  | 
| 1278 |  | vector<int> ivec; | 
| 1279 |  | BondStamp* currBondStamp = static_cast<BondStamp*>(blockStack.top()); | 
| 1280 |  |  | 
| 1281 | < | #line 1004 "MDTreeParser.cpp" | 
| 1281 | > | #line 1282 "MDTreeParser.cpp" | 
| 1282 |  |  | 
| 1283 |  | try {      // for error handling | 
| 1284 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1292 |  | } | 
| 1293 |  | case MEMBERS: | 
| 1294 |  | { | 
| 1295 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t33 = _t; | 
| 1296 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp26_AST_in = _t; | 
| 1295 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t50 = _t; | 
| 1296 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp38_AST_in = _t; | 
| 1297 |  | match(_t,MEMBERS); | 
| 1298 |  | _t = _t->getFirstChild(); | 
| 1299 |  | ivec=inttuple(_t); | 
| 1300 |  | _t = _retTree; | 
| 1301 | < | _t = __t33; | 
| 1301 | > | _t = __t50; | 
| 1302 |  | _t = _t->getNextSibling(); | 
| 1303 | < | #line 129 "MDTreeParser.g" | 
| 1303 | > | #line 160 "MDTreeParser.g" | 
| 1304 |  | currBondStamp->setMembers(ivec); | 
| 1305 | < | #line 1028 "MDTreeParser.cpp" | 
| 1305 | > | #line 1306 "MDTreeParser.cpp" | 
| 1306 |  | break; | 
| 1307 |  | } | 
| 1308 |  | default: | 
| 1320 |  | } | 
| 1321 |  |  | 
| 1322 |  | vector<int>  MDTreeParser::inttuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1323 | < | #line 254 "MDTreeParser.g" | 
| 1323 | > | #line 288 "MDTreeParser.g" | 
| 1324 |  | vector<int> ivec; | 
| 1325 | < | #line 1048 "MDTreeParser.cpp" | 
| 1325 | > | #line 1326 "MDTreeParser.cpp" | 
| 1326 |  | ANTLR_USE_NAMESPACE(antlr)RefAST inttuple_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1327 | < | #line 254 "MDTreeParser.g" | 
| 1327 | > | #line 288 "MDTreeParser.g" | 
| 1328 |  |  | 
| 1329 |  | int ival; | 
| 1330 |  |  | 
| 1331 | < | #line 1054 "MDTreeParser.cpp" | 
| 1331 | > | #line 1332 "MDTreeParser.cpp" | 
| 1332 |  |  | 
| 1333 |  | try {      // for error handling | 
| 1334 |  | { // ( ... )+ | 
| 1335 | < | int _cnt74=0; | 
| 1335 | > | int _cnt92=0; | 
| 1336 |  | for (;;) { | 
| 1337 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1338 |  | _t = ASTNULL; | 
| 1339 |  | if ((_t->getType() == NUM_INT || _t->getType() == NUM_LONG)) { | 
| 1340 |  | ival=intConst(_t); | 
| 1341 |  | _t = _retTree; | 
| 1342 | < | #line 258 "MDTreeParser.g" | 
| 1342 | > | #line 292 "MDTreeParser.g" | 
| 1343 |  | ivec.push_back(ival); | 
| 1344 | < | #line 1067 "MDTreeParser.cpp" | 
| 1344 | > | #line 1345 "MDTreeParser.cpp" | 
| 1345 |  | } | 
| 1346 |  | else { | 
| 1347 | < | if ( _cnt74>=1 ) { goto _loop74; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} | 
| 1347 | > | if ( _cnt92>=1 ) { goto _loop92; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} | 
| 1348 |  | } | 
| 1349 |  |  | 
| 1350 | < | _cnt74++; | 
| 1350 | > | _cnt92++; | 
| 1351 |  | } | 
| 1352 | < | _loop74:; | 
| 1352 | > | _loop92:; | 
| 1353 |  | }  // ( ... )+ | 
| 1354 |  | } | 
| 1355 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1363 |  |  | 
| 1364 |  | void MDTreeParser::bendstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1365 |  | ANTLR_USE_NAMESPACE(antlr)RefAST bendstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1366 | < | #line 142 "MDTreeParser.g" | 
| 1366 | > | #line 173 "MDTreeParser.g" | 
| 1367 |  |  | 
| 1368 |  | vector<int> ivec; | 
| 1369 |  | BendStamp* currBendStamp = static_cast<BendStamp*>(blockStack.top()); | 
| 1370 |  |  | 
| 1371 | < | #line 1094 "MDTreeParser.cpp" | 
| 1371 | > | #line 1372 "MDTreeParser.cpp" | 
| 1372 |  |  | 
| 1373 |  | try {      // for error handling | 
| 1374 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1382 |  | } | 
| 1383 |  | case MEMBERS: | 
| 1384 |  | { | 
| 1385 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t39 = _t; | 
| 1386 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp27_AST_in = _t; | 
| 1385 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t56 = _t; | 
| 1386 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp39_AST_in = _t; | 
| 1387 |  | match(_t,MEMBERS); | 
| 1388 |  | _t = _t->getFirstChild(); | 
| 1389 |  | ivec=inttuple(_t); | 
| 1390 |  | _t = _retTree; | 
| 1391 | < | _t = __t39; | 
| 1391 | > | _t = __t56; | 
| 1392 |  | _t = _t->getNextSibling(); | 
| 1393 | < | #line 148 "MDTreeParser.g" | 
| 1393 | > | #line 179 "MDTreeParser.g" | 
| 1394 |  | currBendStamp->setMembers(ivec); | 
| 1395 | < | #line 1118 "MDTreeParser.cpp" | 
| 1395 | > | #line 1396 "MDTreeParser.cpp" | 
| 1396 |  | break; | 
| 1397 |  | } | 
| 1398 |  | default: | 
| 1411 |  |  | 
| 1412 |  | void MDTreeParser::torsionstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1413 |  | ANTLR_USE_NAMESPACE(antlr)RefAST torsionstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1414 | < | #line 161 "MDTreeParser.g" | 
| 1414 | > | #line 192 "MDTreeParser.g" | 
| 1415 |  |  | 
| 1416 |  | vector<int> ivec; | 
| 1417 |  | TorsionStamp* currTorsionStamp = static_cast<TorsionStamp*>(blockStack.top()); | 
| 1418 |  |  | 
| 1419 | < | #line 1142 "MDTreeParser.cpp" | 
| 1419 | > | #line 1420 "MDTreeParser.cpp" | 
| 1420 |  |  | 
| 1421 |  | try {      // for error handling | 
| 1422 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1430 |  | } | 
| 1431 |  | case MEMBERS: | 
| 1432 |  | { | 
| 1433 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t45 = _t; | 
| 1434 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp28_AST_in = _t; | 
| 1433 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t62 = _t; | 
| 1434 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp40_AST_in = _t; | 
| 1435 |  | match(_t,MEMBERS); | 
| 1436 |  | _t = _t->getFirstChild(); | 
| 1437 |  | ivec=inttuple(_t); | 
| 1438 |  | _t = _retTree; | 
| 1439 | < | _t = __t45; | 
| 1439 | > | _t = __t62; | 
| 1440 |  | _t = _t->getNextSibling(); | 
| 1441 | < | #line 167 "MDTreeParser.g" | 
| 1441 | > | #line 198 "MDTreeParser.g" | 
| 1442 |  | currTorsionStamp->setMembers(ivec); | 
| 1443 | < | #line 1166 "MDTreeParser.cpp" | 
| 1443 | > | #line 1444 "MDTreeParser.cpp" | 
| 1444 |  | break; | 
| 1445 |  | } | 
| 1446 |  | default: | 
| 1459 |  |  | 
| 1460 |  | void MDTreeParser::inversionstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1461 |  | ANTLR_USE_NAMESPACE(antlr)RefAST inversionstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1462 | < | #line 180 "MDTreeParser.g" | 
| 1462 | > | #line 211 "MDTreeParser.g" | 
| 1463 |  |  | 
| 1464 |  | int icent; | 
| 1465 | + | vector<int> ivec; | 
| 1466 |  | InversionStamp* currInversionStamp = static_cast<InversionStamp*>(blockStack.top()); | 
| 1467 |  |  | 
| 1468 | < | #line 1190 "MDTreeParser.cpp" | 
| 1468 | > | #line 1469 "MDTreeParser.cpp" | 
| 1469 |  |  | 
| 1470 |  | try {      // for error handling | 
| 1471 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1479 |  | } | 
| 1480 |  | case CENTER: | 
| 1481 |  | { | 
| 1482 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t51 = _t; | 
| 1483 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp29_AST_in = _t; | 
| 1482 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t68 = _t; | 
| 1483 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp41_AST_in = _t; | 
| 1484 |  | match(_t,CENTER); | 
| 1485 |  | _t = _t->getFirstChild(); | 
| 1486 |  | icent=intConst(_t); | 
| 1487 |  | _t = _retTree; | 
| 1488 | < | _t = __t51; | 
| 1488 | > | _t = __t68; | 
| 1489 |  | _t = _t->getNextSibling(); | 
| 1490 | < | #line 186 "MDTreeParser.g" | 
| 1490 | > | #line 218 "MDTreeParser.g" | 
| 1491 |  | currInversionStamp->setCenter(icent); | 
| 1492 | < | #line 1214 "MDTreeParser.cpp" | 
| 1492 | > | #line 1493 "MDTreeParser.cpp" | 
| 1493 |  | break; | 
| 1494 |  | } | 
| 1495 | + | case SATELLITES: | 
| 1496 | + | { | 
| 1497 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t69 = _t; | 
| 1498 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp42_AST_in = _t; | 
| 1499 | + | match(_t,SATELLITES); | 
| 1500 | + | _t = _t->getFirstChild(); | 
| 1501 | + | ivec=inttuple(_t); | 
| 1502 | + | _t = _retTree; | 
| 1503 | + | _t = __t69; | 
| 1504 | + | _t = _t->getNextSibling(); | 
| 1505 | + | #line 219 "MDTreeParser.g" | 
| 1506 | + | currInversionStamp->setSatellites(ivec); | 
| 1507 | + | #line 1508 "MDTreeParser.cpp" | 
| 1508 | + | break; | 
| 1509 | + | } | 
| 1510 |  | default: | 
| 1511 |  | { | 
| 1512 |  | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1523 |  |  | 
| 1524 |  | void MDTreeParser::rigidbodystatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1525 |  | ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodystatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1526 | < | #line 203 "MDTreeParser.g" | 
| 1526 | > | #line 236 "MDTreeParser.g" | 
| 1527 |  |  | 
| 1528 |  | vector<int> ivec; | 
| 1529 |  | RigidBodyStamp* currRigidBodyStamp = static_cast<RigidBodyStamp*>(blockStack.top()); | 
| 1530 |  |  | 
| 1531 | < | #line 1238 "MDTreeParser.cpp" | 
| 1531 | > | #line 1532 "MDTreeParser.cpp" | 
| 1532 |  |  | 
| 1533 |  | try {      // for error handling | 
| 1534 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1542 |  | } | 
| 1543 |  | case MEMBERS: | 
| 1544 |  | { | 
| 1545 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t57 = _t; | 
| 1546 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp30_AST_in = _t; | 
| 1545 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t75 = _t; | 
| 1546 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp43_AST_in = _t; | 
| 1547 |  | match(_t,MEMBERS); | 
| 1548 |  | _t = _t->getFirstChild(); | 
| 1549 |  | ivec=inttuple(_t); | 
| 1550 |  | _t = _retTree; | 
| 1551 | < | _t = __t57; | 
| 1551 | > | _t = __t75; | 
| 1552 |  | _t = _t->getNextSibling(); | 
| 1553 | < | #line 209 "MDTreeParser.g" | 
| 1553 | > | #line 242 "MDTreeParser.g" | 
| 1554 |  | currRigidBodyStamp->setMembers(ivec); | 
| 1555 | < | #line 1262 "MDTreeParser.cpp" | 
| 1555 | > | #line 1556 "MDTreeParser.cpp" | 
| 1556 |  | break; | 
| 1557 |  | } | 
| 1558 |  | default: | 
| 1571 |  |  | 
| 1572 |  | void MDTreeParser::cutoffgroupstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1573 |  | ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1574 | < | #line 222 "MDTreeParser.g" | 
| 1574 | > | #line 255 "MDTreeParser.g" | 
| 1575 |  |  | 
| 1576 |  | vector<int> ivec; | 
| 1577 |  | CutoffGroupStamp* currCutoffGroupStamp = static_cast<CutoffGroupStamp*>(blockStack.top()); | 
| 1578 |  |  | 
| 1579 | < | #line 1286 "MDTreeParser.cpp" | 
| 1579 | > | #line 1580 "MDTreeParser.cpp" | 
| 1580 |  |  | 
| 1581 |  | try {      // for error handling | 
| 1582 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1590 |  | } | 
| 1591 |  | case MEMBERS: | 
| 1592 |  | { | 
| 1593 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t63 = _t; | 
| 1594 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp31_AST_in = _t; | 
| 1593 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t81 = _t; | 
| 1594 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp44_AST_in = _t; | 
| 1595 |  | match(_t,MEMBERS); | 
| 1596 |  | _t = _t->getFirstChild(); | 
| 1597 |  | ivec=inttuple(_t); | 
| 1598 |  | _t = _retTree; | 
| 1599 | < | _t = __t63; | 
| 1599 | > | _t = __t81; | 
| 1600 |  | _t = _t->getNextSibling(); | 
| 1601 | < | #line 228 "MDTreeParser.g" | 
| 1601 | > | #line 261 "MDTreeParser.g" | 
| 1602 |  | currCutoffGroupStamp->setMembers(ivec); | 
| 1603 | < | #line 1310 "MDTreeParser.cpp" | 
| 1603 | > | #line 1604 "MDTreeParser.cpp" | 
| 1604 |  | break; | 
| 1605 |  | } | 
| 1606 |  | default: | 
| 1632 |  | _retTree = _t; | 
| 1633 |  | } | 
| 1634 |  |  | 
| 1341 | – | RealType  MDTreeParser::doubleNumber(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1342 | – | #line 268 "MDTreeParser.g" | 
| 1343 | – | RealType dval; | 
| 1344 | – | #line 1345 "MDTreeParser.cpp" | 
| 1345 | – | ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumber_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1346 | – | ANTLR_USE_NAMESPACE(antlr)RefAST ic = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 1347 | – | ANTLR_USE_NAMESPACE(antlr)RefAST fc = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 1348 | – |  | 
| 1349 | – | try {      // for error handling | 
| 1350 | – | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1351 | – | _t = ASTNULL; | 
| 1352 | – | switch ( _t->getType()) { | 
| 1353 | – | case NUM_INT: | 
| 1354 | – | case NUM_LONG: | 
| 1355 | – | { | 
| 1356 | – | ic = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1357 | – | intConst(_t); | 
| 1358 | – | _t = _retTree; | 
| 1359 | – | #line 270 "MDTreeParser.g" | 
| 1360 | – | dval = lexi_cast<RealType>(ic->getText()); | 
| 1361 | – | #line 1362 "MDTreeParser.cpp" | 
| 1362 | – | break; | 
| 1363 | – | } | 
| 1364 | – | case NUM_FLOAT: | 
| 1365 | – | case NUM_DOUBLE: | 
| 1366 | – | { | 
| 1367 | – | fc = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1368 | – | floatConst(_t); | 
| 1369 | – | _t = _retTree; | 
| 1370 | – | #line 271 "MDTreeParser.g" | 
| 1371 | – | dval = lexi_cast<RealType>(fc->getText()); | 
| 1372 | – | #line 1373 "MDTreeParser.cpp" | 
| 1373 | – | break; | 
| 1374 | – | } | 
| 1375 | – | default: | 
| 1376 | – | { | 
| 1377 | – | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1378 | – | } | 
| 1379 | – | } | 
| 1380 | – | } | 
| 1381 | – | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1382 | – | reportError(ex); | 
| 1383 | – | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1384 | – | _t = _t->getNextSibling(); | 
| 1385 | – | } | 
| 1386 | – | _retTree = _t; | 
| 1387 | – | return dval; | 
| 1388 | – | } | 
| 1389 | – |  | 
| 1635 |  | void MDTreeParser::initializeASTFactory( ANTLR_USE_NAMESPACE(antlr)ASTFactory& ) | 
| 1636 |  | { | 
| 1637 |  | } | 
| 1643 |  | "\"component\"", | 
| 1644 |  | "\"molecule\"", | 
| 1645 |  | "\"zconstraint\"", | 
| 1646 | + | "\"restraint\"", | 
| 1647 |  | "\"atom\"", | 
| 1648 |  | "\"bond\"", | 
| 1649 |  | "\"bend\"", | 
| 1654 |  | "\"fragment\"", | 
| 1655 |  | "\"members\"", | 
| 1656 |  | "\"center\"", | 
| 1657 | + | "\"satellites\"", | 
| 1658 |  | "\"position\"", | 
| 1659 |  | "\"orientation\"", | 
| 1660 | + | "\"flucQ\"", | 
| 1661 | + | "\"RNEMD\"", | 
| 1662 | + | "\"minimizer\"", | 
| 1663 |  | "ENDBLOCK", | 
| 1664 |  | "ID", | 
| 1665 |  | "ASSIGNEQUAL", | 
| 1697 |  | 0 | 
| 1698 |  | }; | 
| 1699 |  |  | 
| 1700 | < | const unsigned long MDTreeParser::_tokenSet_0_data_[] = { 2097264UL, 0UL, 0UL, 0UL }; | 
| 1701 | < | // "component" "molecule" "zconstraint" ASSIGNEQUAL | 
| 1700 | > | const unsigned long MDTreeParser::_tokenSet_0_data_[] = { 81789168UL, 0UL, 0UL, 0UL }; | 
| 1701 | > | // "component" "molecule" "zconstraint" "restraint" "flucQ" "RNEMD" "minimizer" | 
| 1702 | > | // ASSIGNEQUAL | 
| 1703 |  | const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_0(_tokenSet_0_data_,4); | 
| 1704 | < | const unsigned long MDTreeParser::_tokenSet_1_data_[] = { 2129792UL, 0UL, 0UL, 0UL }; | 
| 1704 | > | const unsigned long MDTreeParser::_tokenSet_1_data_[] = { 67174144UL, 0UL, 0UL, 0UL }; | 
| 1705 |  | // "atom" "bond" "bend" "torsion" "inversion" "rigidBody" "cutoffGroup" | 
| 1706 |  | // "fragment" ASSIGNEQUAL | 
| 1707 |  | const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_1(_tokenSet_1_data_,4); |