| 1 | /* $ANTLR 2.7.7 (20121118): "MDTreeParser.g" -> "MDTreeParser.cpp"$ */ | 
| 2 | #include "MDTreeParser.hpp" | 
| 3 | #include <antlr/Token.hpp> | 
| 4 | #include <antlr/AST.hpp> | 
| 5 | #include <antlr/NoViableAltException.hpp> | 
| 6 | #include <antlr/MismatchedTokenException.hpp> | 
| 7 | #include <antlr/SemanticException.hpp> | 
| 8 | #include <antlr/BitSet.hpp> | 
| 9 | #line 1 "MDTreeParser.g" | 
| 10 | #line 11 "MDTreeParser.cpp" | 
| 11 | MDTreeParser::MDTreeParser() | 
| 12 | : ANTLR_USE_NAMESPACE(antlr)TreeParser() { | 
| 13 | } | 
| 14 |  | 
| 15 | void MDTreeParser::mdfile(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 16 | ANTLR_USE_NAMESPACE(antlr)RefAST mdfile_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 17 |  | 
| 18 | try {      // for error handling | 
| 19 | { // ( ... )* | 
| 20 | for (;;) { | 
| 21 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 22 | _t = ASTNULL; | 
| 23 | if ((_tokenSet_0.member(_t->getType()))) { | 
| 24 | statement(_t); | 
| 25 | _t = _retTree; | 
| 26 | } | 
| 27 | else { | 
| 28 | goto _loop3; | 
| 29 | } | 
| 30 |  | 
| 31 | } | 
| 32 | _loop3:; | 
| 33 | } // ( ... )* | 
| 34 | #line 34 "MDTreeParser.g" | 
| 35 | blockStack.top()->validate(); blockStack.pop(); | 
| 36 | #line 37 "MDTreeParser.cpp" | 
| 37 | } | 
| 38 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 39 | reportError(ex); | 
| 40 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 41 | _t = _t->getNextSibling(); | 
| 42 | } | 
| 43 | _retTree = _t; | 
| 44 | } | 
| 45 |  | 
| 46 | void MDTreeParser::statement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 47 | ANTLR_USE_NAMESPACE(antlr)RefAST statement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 48 |  | 
| 49 | try {      // for error handling | 
| 50 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 51 | _t = ASTNULL; | 
| 52 | switch ( _t->getType()) { | 
| 53 | case ASSIGNEQUAL: | 
| 54 | { | 
| 55 | assignment(_t); | 
| 56 | _t = _retTree; | 
| 57 | break; | 
| 58 | } | 
| 59 | case COMPONENT: | 
| 60 | { | 
| 61 | componentblock(_t); | 
| 62 | _t = _retTree; | 
| 63 | break; | 
| 64 | } | 
| 65 | case MOLECULE: | 
| 66 | { | 
| 67 | moleculeblock(_t); | 
| 68 | _t = _retTree; | 
| 69 | break; | 
| 70 | } | 
| 71 | case ZCONSTRAINT: | 
| 72 | { | 
| 73 | zconstraintblock(_t); | 
| 74 | _t = _retTree; | 
| 75 | break; | 
| 76 | } | 
| 77 | case RESTRAINT: | 
| 78 | { | 
| 79 | restraintblock(_t); | 
| 80 | _t = _retTree; | 
| 81 | break; | 
| 82 | } | 
| 83 | case FLUCQ: | 
| 84 | { | 
| 85 | flucqblock(_t); | 
| 86 | _t = _retTree; | 
| 87 | break; | 
| 88 | } | 
| 89 | case RNEMD: | 
| 90 | { | 
| 91 | rnemdblock(_t); | 
| 92 | _t = _retTree; | 
| 93 | break; | 
| 94 | } | 
| 95 | case MINIMIZER: | 
| 96 | { | 
| 97 | minimizerblock(_t); | 
| 98 | _t = _retTree; | 
| 99 | break; | 
| 100 | } | 
| 101 | default: | 
| 102 | { | 
| 103 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 104 | } | 
| 105 | } | 
| 106 | } | 
| 107 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 108 | reportError(ex); | 
| 109 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 110 | _t = _t->getNextSibling(); | 
| 111 | } | 
| 112 | _retTree = _t; | 
| 113 | } | 
| 114 |  | 
| 115 | void MDTreeParser::assignment(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 116 | ANTLR_USE_NAMESPACE(antlr)RefAST assignment_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 117 | ANTLR_USE_NAMESPACE(antlr)RefAST id = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 118 |  | 
| 119 | try {      // for error handling | 
| 120 | ANTLR_USE_NAMESPACE(antlr)RefAST __t6 = _t; | 
| 121 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp1_AST_in = _t; | 
| 122 | match(_t,ASSIGNEQUAL); | 
| 123 | _t = _t->getFirstChild(); | 
| 124 | id = _t; | 
| 125 | match(_t,ID); | 
| 126 | _t = _t->getNextSibling(); | 
| 127 | constant(_t,id); | 
| 128 | _t = _retTree; | 
| 129 | _t = __t6; | 
| 130 | _t = _t->getNextSibling(); | 
| 131 | } | 
| 132 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 133 | reportError(ex); | 
| 134 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 135 | _t = _t->getNextSibling(); | 
| 136 | } | 
| 137 | _retTree = _t; | 
| 138 | } | 
| 139 |  | 
| 140 | void MDTreeParser::componentblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 141 | ANTLR_USE_NAMESPACE(antlr)RefAST componentblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 142 |  | 
| 143 | try {      // for error handling | 
| 144 | ANTLR_USE_NAMESPACE(antlr)RefAST __t10 = _t; | 
| 145 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp2_AST_in = _t; | 
| 146 | match(_t,COMPONENT); | 
| 147 | _t = _t->getFirstChild(); | 
| 148 | #line 72 "MDTreeParser.g" | 
| 149 | Component* currComponet = new Component(); blockStack.push(currComponet); | 
| 150 | #line 151 "MDTreeParser.cpp" | 
| 151 | { // ( ... )* | 
| 152 | for (;;) { | 
| 153 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 154 | _t = ASTNULL; | 
| 155 | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 156 | assignment(_t); | 
| 157 | _t = _retTree; | 
| 158 | } | 
| 159 | else { | 
| 160 | goto _loop12; | 
| 161 | } | 
| 162 |  | 
| 163 | } | 
| 164 | _loop12:; | 
| 165 | } // ( ... )* | 
| 166 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp3_AST_in = _t; | 
| 167 | match(_t,ENDBLOCK); | 
| 168 | _t = _t->getNextSibling(); | 
| 169 | _t = __t10; | 
| 170 | _t = _t->getNextSibling(); | 
| 171 | #line 74 "MDTreeParser.g" | 
| 172 | blockStack.top()->validate();blockStack.pop(); currConf->addComponent(currComponet); | 
| 173 | #line 174 "MDTreeParser.cpp" | 
| 174 | } | 
| 175 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 176 | reportError(ex); | 
| 177 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 178 | _t = _t->getNextSibling(); | 
| 179 | } | 
| 180 | _retTree = _t; | 
| 181 | } | 
| 182 |  | 
| 183 | void MDTreeParser::moleculeblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 184 | ANTLR_USE_NAMESPACE(antlr)RefAST moleculeblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 185 |  | 
| 186 | try {      // for error handling | 
| 187 | ANTLR_USE_NAMESPACE(antlr)RefAST __t34 = _t; | 
| 188 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp4_AST_in = _t; | 
| 189 | match(_t,MOLECULE); | 
| 190 | _t = _t->getFirstChild(); | 
| 191 | #line 103 "MDTreeParser.g" | 
| 192 | MoleculeStamp* currMoleculeStamp = new MoleculeStamp(); blockStack.push(currMoleculeStamp); | 
| 193 | #line 194 "MDTreeParser.cpp" | 
| 194 | { // ( ... )* | 
| 195 | for (;;) { | 
| 196 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 197 | _t = ASTNULL; | 
| 198 | if ((_tokenSet_1.member(_t->getType()))) { | 
| 199 | moleculestatement(_t); | 
| 200 | _t = _retTree; | 
| 201 | } | 
| 202 | else { | 
| 203 | goto _loop36; | 
| 204 | } | 
| 205 |  | 
| 206 | } | 
| 207 | _loop36:; | 
| 208 | } // ( ... )* | 
| 209 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp5_AST_in = _t; | 
| 210 | match(_t,ENDBLOCK); | 
| 211 | _t = _t->getNextSibling(); | 
| 212 | _t = __t34; | 
| 213 | _t = _t->getNextSibling(); | 
| 214 | #line 105 "MDTreeParser.g" | 
| 215 | blockStack.top()->validate(); blockStack.pop(); currConf->addMoleculeStamp(currMoleculeStamp); | 
| 216 | #line 217 "MDTreeParser.cpp" | 
| 217 | } | 
| 218 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 219 | reportError(ex); | 
| 220 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 221 | _t = _t->getNextSibling(); | 
| 222 | } | 
| 223 | _retTree = _t; | 
| 224 | } | 
| 225 |  | 
| 226 | void MDTreeParser::zconstraintblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 227 | ANTLR_USE_NAMESPACE(antlr)RefAST zconstraintblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 228 |  | 
| 229 | try {      // for error handling | 
| 230 | ANTLR_USE_NAMESPACE(antlr)RefAST __t14 = _t; | 
| 231 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp6_AST_in = _t; | 
| 232 | match(_t,ZCONSTRAINT); | 
| 233 | _t = _t->getFirstChild(); | 
| 234 | #line 77 "MDTreeParser.g" | 
| 235 | ZConsStamp* currZConsStamp = new ZConsStamp(); blockStack.push(currZConsStamp); | 
| 236 | #line 237 "MDTreeParser.cpp" | 
| 237 | { // ( ... )* | 
| 238 | for (;;) { | 
| 239 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 240 | _t = ASTNULL; | 
| 241 | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 242 | assignment(_t); | 
| 243 | _t = _retTree; | 
| 244 | } | 
| 245 | else { | 
| 246 | goto _loop16; | 
| 247 | } | 
| 248 |  | 
| 249 | } | 
| 250 | _loop16:; | 
| 251 | } // ( ... )* | 
| 252 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp7_AST_in = _t; | 
| 253 | match(_t,ENDBLOCK); | 
| 254 | _t = _t->getNextSibling(); | 
| 255 | _t = __t14; | 
| 256 | _t = _t->getNextSibling(); | 
| 257 | #line 79 "MDTreeParser.g" | 
| 258 | blockStack.top()->validate();blockStack.pop(); currConf->addZConsStamp(currZConsStamp); | 
| 259 | #line 260 "MDTreeParser.cpp" | 
| 260 | } | 
| 261 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 262 | reportError(ex); | 
| 263 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 264 | _t = _t->getNextSibling(); | 
| 265 | } | 
| 266 | _retTree = _t; | 
| 267 | } | 
| 268 |  | 
| 269 | void MDTreeParser::restraintblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 270 | ANTLR_USE_NAMESPACE(antlr)RefAST restraintblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 271 |  | 
| 272 | try {      // for error handling | 
| 273 | ANTLR_USE_NAMESPACE(antlr)RefAST __t18 = _t; | 
| 274 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp8_AST_in = _t; | 
| 275 | match(_t,RESTRAINT); | 
| 276 | _t = _t->getFirstChild(); | 
| 277 | #line 82 "MDTreeParser.g" | 
| 278 | RestraintStamp* currRestraintStamp = new RestraintStamp(); blockStack.push(currRestraintStamp); | 
| 279 | #line 280 "MDTreeParser.cpp" | 
| 280 | { // ( ... )* | 
| 281 | for (;;) { | 
| 282 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 283 | _t = ASTNULL; | 
| 284 | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 285 | assignment(_t); | 
| 286 | _t = _retTree; | 
| 287 | } | 
| 288 | else { | 
| 289 | goto _loop20; | 
| 290 | } | 
| 291 |  | 
| 292 | } | 
| 293 | _loop20:; | 
| 294 | } // ( ... )* | 
| 295 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp9_AST_in = _t; | 
| 296 | match(_t,ENDBLOCK); | 
| 297 | _t = _t->getNextSibling(); | 
| 298 | _t = __t18; | 
| 299 | _t = _t->getNextSibling(); | 
| 300 | #line 84 "MDTreeParser.g" | 
| 301 | blockStack.top()->validate();blockStack.pop(); currConf->addRestraintStamp(currRestraintStamp); | 
| 302 | #line 303 "MDTreeParser.cpp" | 
| 303 | } | 
| 304 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 305 | reportError(ex); | 
| 306 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 307 | _t = _t->getNextSibling(); | 
| 308 | } | 
| 309 | _retTree = _t; | 
| 310 | } | 
| 311 |  | 
| 312 | void MDTreeParser::flucqblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 313 | ANTLR_USE_NAMESPACE(antlr)RefAST flucqblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 314 |  | 
| 315 | try {      // for error handling | 
| 316 | ANTLR_USE_NAMESPACE(antlr)RefAST __t22 = _t; | 
| 317 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp10_AST_in = _t; | 
| 318 | match(_t,FLUCQ); | 
| 319 | _t = _t->getFirstChild(); | 
| 320 | #line 87 "MDTreeParser.g" | 
| 321 | FluctuatingChargeParameters* flucQpars = new FluctuatingChargeParameters(); blockStack.push(flucQpars); | 
| 322 | #line 323 "MDTreeParser.cpp" | 
| 323 | { // ( ... )* | 
| 324 | for (;;) { | 
| 325 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 326 | _t = ASTNULL; | 
| 327 | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 328 | assignment(_t); | 
| 329 | _t = _retTree; | 
| 330 | } | 
| 331 | else { | 
| 332 | goto _loop24; | 
| 333 | } | 
| 334 |  | 
| 335 | } | 
| 336 | _loop24:; | 
| 337 | } // ( ... )* | 
| 338 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp11_AST_in = _t; | 
| 339 | match(_t,ENDBLOCK); | 
| 340 | _t = _t->getNextSibling(); | 
| 341 | _t = __t22; | 
| 342 | _t = _t->getNextSibling(); | 
| 343 | #line 89 "MDTreeParser.g" | 
| 344 | blockStack.top()->validate();blockStack.pop(); currConf->addFluctuatingChargeParameters(flucQpars); | 
| 345 | #line 346 "MDTreeParser.cpp" | 
| 346 | } | 
| 347 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 348 | reportError(ex); | 
| 349 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 350 | _t = _t->getNextSibling(); | 
| 351 | } | 
| 352 | _retTree = _t; | 
| 353 | } | 
| 354 |  | 
| 355 | void MDTreeParser::rnemdblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 356 | ANTLR_USE_NAMESPACE(antlr)RefAST rnemdblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 357 |  | 
| 358 | try {      // for error handling | 
| 359 | ANTLR_USE_NAMESPACE(antlr)RefAST __t26 = _t; | 
| 360 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp12_AST_in = _t; | 
| 361 | match(_t,RNEMD); | 
| 362 | _t = _t->getFirstChild(); | 
| 363 | #line 92 "MDTreeParser.g" | 
| 364 | RNEMDParameters* rnemdPars = new RNEMDParameters(); blockStack.push(rnemdPars); | 
| 365 | #line 366 "MDTreeParser.cpp" | 
| 366 | { // ( ... )* | 
| 367 | for (;;) { | 
| 368 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 369 | _t = ASTNULL; | 
| 370 | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 371 | assignment(_t); | 
| 372 | _t = _retTree; | 
| 373 | } | 
| 374 | else { | 
| 375 | goto _loop28; | 
| 376 | } | 
| 377 |  | 
| 378 | } | 
| 379 | _loop28:; | 
| 380 | } // ( ... )* | 
| 381 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp13_AST_in = _t; | 
| 382 | match(_t,ENDBLOCK); | 
| 383 | _t = _t->getNextSibling(); | 
| 384 | _t = __t26; | 
| 385 | _t = _t->getNextSibling(); | 
| 386 | #line 94 "MDTreeParser.g" | 
| 387 | blockStack.top()->validate();blockStack.pop(); currConf->addRNEMDParameters(rnemdPars); | 
| 388 | #line 389 "MDTreeParser.cpp" | 
| 389 | } | 
| 390 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 391 | reportError(ex); | 
| 392 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 393 | _t = _t->getNextSibling(); | 
| 394 | } | 
| 395 | _retTree = _t; | 
| 396 | } | 
| 397 |  | 
| 398 | void MDTreeParser::minimizerblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 399 | ANTLR_USE_NAMESPACE(antlr)RefAST minimizerblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 400 |  | 
| 401 | try {      // for error handling | 
| 402 | ANTLR_USE_NAMESPACE(antlr)RefAST __t30 = _t; | 
| 403 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp14_AST_in = _t; | 
| 404 | match(_t,MINIMIZER); | 
| 405 | _t = _t->getFirstChild(); | 
| 406 | #line 97 "MDTreeParser.g" | 
| 407 | MinimizerParameters* minimizerPars = new MinimizerParameters(); blockStack.push(minimizerPars); | 
| 408 | #line 409 "MDTreeParser.cpp" | 
| 409 | { // ( ... )* | 
| 410 | for (;;) { | 
| 411 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 412 | _t = ASTNULL; | 
| 413 | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 414 | assignment(_t); | 
| 415 | _t = _retTree; | 
| 416 | } | 
| 417 | else { | 
| 418 | goto _loop32; | 
| 419 | } | 
| 420 |  | 
| 421 | } | 
| 422 | _loop32:; | 
| 423 | } // ( ... )* | 
| 424 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp15_AST_in = _t; | 
| 425 | match(_t,ENDBLOCK); | 
| 426 | _t = _t->getNextSibling(); | 
| 427 | _t = __t30; | 
| 428 | _t = _t->getNextSibling(); | 
| 429 | #line 99 "MDTreeParser.g" | 
| 430 | blockStack.top()->validate();blockStack.pop(); currConf->addMinimizerParameters(minimizerPars); | 
| 431 | #line 432 "MDTreeParser.cpp" | 
| 432 | } | 
| 433 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 434 | reportError(ex); | 
| 435 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 436 | _t = _t->getNextSibling(); | 
| 437 | } | 
| 438 | _retTree = _t; | 
| 439 | } | 
| 440 |  | 
| 441 | void MDTreeParser::constant(ANTLR_USE_NAMESPACE(antlr)RefAST _t, | 
| 442 | ANTLR_USE_NAMESPACE(antlr)RefAST id | 
| 443 | ) { | 
| 444 | ANTLR_USE_NAMESPACE(antlr)RefAST constant_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 445 | ANTLR_USE_NAMESPACE(antlr)RefAST str1 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 446 | ANTLR_USE_NAMESPACE(antlr)RefAST str2 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 447 | #line 50 "MDTreeParser.g" | 
| 448 |  | 
| 449 | int ival; | 
| 450 | RealType dval, x, y, z; | 
| 451 | Vector3d dvec; | 
| 452 |  | 
| 453 | #line 454 "MDTreeParser.cpp" | 
| 454 |  | 
| 455 | try {      // for error handling | 
| 456 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 457 | _t = ASTNULL; | 
| 458 | switch ( _t->getType()) { | 
| 459 | case NUM_INT: | 
| 460 | case NUM_LONG: | 
| 461 | { | 
| 462 | ival=intConst(_t); | 
| 463 | _t = _retTree; | 
| 464 | #line 56 "MDTreeParser.g" | 
| 465 | blockStack.top()->assign(id->getText(), ival); | 
| 466 | #line 467 "MDTreeParser.cpp" | 
| 467 | break; | 
| 468 | } | 
| 469 | case NUM_FLOAT: | 
| 470 | case NUM_DOUBLE: | 
| 471 | { | 
| 472 | dval=floatConst(_t); | 
| 473 | _t = _retTree; | 
| 474 | #line 57 "MDTreeParser.g" | 
| 475 | blockStack.top()->assign(id->getText(), dval); | 
| 476 | #line 477 "MDTreeParser.cpp" | 
| 477 | break; | 
| 478 | } | 
| 479 | case LPAREN: | 
| 480 | { | 
| 481 | ANTLR_USE_NAMESPACE(antlr)RefAST __t8 = _t; | 
| 482 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp16_AST_in = _t; | 
| 483 | match(_t,LPAREN); | 
| 484 | _t = _t->getFirstChild(); | 
| 485 | x=doubleNumber(_t); | 
| 486 | _t = _retTree; | 
| 487 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp17_AST_in = _t; | 
| 488 | match(_t,COMMA); | 
| 489 | _t = _t->getNextSibling(); | 
| 490 | y=doubleNumber(_t); | 
| 491 | _t = _retTree; | 
| 492 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp18_AST_in = _t; | 
| 493 | match(_t,COMMA); | 
| 494 | _t = _t->getNextSibling(); | 
| 495 | z=doubleNumber(_t); | 
| 496 | _t = _retTree; | 
| 497 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp19_AST_in = _t; | 
| 498 | match(_t,RPAREN); | 
| 499 | _t = _t->getNextSibling(); | 
| 500 | _t = __t8; | 
| 501 | _t = _t->getNextSibling(); | 
| 502 | #line 59 "MDTreeParser.g" | 
| 503 | dvec.x() = x; | 
| 504 | dvec.y() = y; | 
| 505 | dvec.z() = z; | 
| 506 | blockStack.top()->assign(id->getText(), dvec); | 
| 507 |  | 
| 508 | #line 509 "MDTreeParser.cpp" | 
| 509 | break; | 
| 510 | } | 
| 511 | case ID: | 
| 512 | { | 
| 513 | str1 = _t; | 
| 514 | match(_t,ID); | 
| 515 | _t = _t->getNextSibling(); | 
| 516 | #line 64 "MDTreeParser.g" | 
| 517 | blockStack.top()->assign(id->getText(), str1->getText()); | 
| 518 | #line 519 "MDTreeParser.cpp" | 
| 519 | break; | 
| 520 | } | 
| 521 | case StringLiteral: | 
| 522 | { | 
| 523 | str2 = _t; | 
| 524 | match(_t,StringLiteral); | 
| 525 | _t = _t->getNextSibling(); | 
| 526 | #line 65 "MDTreeParser.g" | 
| 527 | std::string s =  str2->getText(); | 
| 528 | s = s.substr(1, s.length()-2); | 
| 529 | blockStack.top()->assign(id->getText(),s); | 
| 530 |  | 
| 531 | #line 532 "MDTreeParser.cpp" | 
| 532 | break; | 
| 533 | } | 
| 534 | default: | 
| 535 | { | 
| 536 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 537 | } | 
| 538 | } | 
| 539 | } | 
| 540 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 541 | reportError(ex); | 
| 542 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 543 | _t = _t->getNextSibling(); | 
| 544 | } | 
| 545 | _retTree = _t; | 
| 546 | } | 
| 547 |  | 
| 548 | int  MDTreeParser::intConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 549 | #line 296 "MDTreeParser.g" | 
| 550 | int ival; | 
| 551 | #line 552 "MDTreeParser.cpp" | 
| 552 | ANTLR_USE_NAMESPACE(antlr)RefAST intConst_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 553 | ANTLR_USE_NAMESPACE(antlr)RefAST i1 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 554 | ANTLR_USE_NAMESPACE(antlr)RefAST i2 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 555 |  | 
| 556 | try {      // for error handling | 
| 557 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 558 | _t = ASTNULL; | 
| 559 | switch ( _t->getType()) { | 
| 560 | case NUM_INT: | 
| 561 | { | 
| 562 | i1 = _t; | 
| 563 | match(_t,NUM_INT); | 
| 564 | _t = _t->getNextSibling(); | 
| 565 | #line 297 "MDTreeParser.g" | 
| 566 | ival = lexi_cast<int>(i1->getText()); | 
| 567 | #line 568 "MDTreeParser.cpp" | 
| 568 | break; | 
| 569 | } | 
| 570 | case NUM_LONG: | 
| 571 | { | 
| 572 | i2 = _t; | 
| 573 | match(_t,NUM_LONG); | 
| 574 | _t = _t->getNextSibling(); | 
| 575 | #line 298 "MDTreeParser.g" | 
| 576 | ival = lexi_cast<int>(i2->getText()); | 
| 577 | #line 578 "MDTreeParser.cpp" | 
| 578 | break; | 
| 579 | } | 
| 580 | default: | 
| 581 | { | 
| 582 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 583 | } | 
| 584 | } | 
| 585 | } | 
| 586 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 587 | reportError(ex); | 
| 588 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 589 | _t = _t->getNextSibling(); | 
| 590 | } | 
| 591 | _retTree = _t; | 
| 592 | return ival; | 
| 593 | } | 
| 594 |  | 
| 595 | RealType  MDTreeParser::floatConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 596 | #line 308 "MDTreeParser.g" | 
| 597 | RealType dval; | 
| 598 | #line 599 "MDTreeParser.cpp" | 
| 599 | ANTLR_USE_NAMESPACE(antlr)RefAST floatConst_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 600 | ANTLR_USE_NAMESPACE(antlr)RefAST d1 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 601 | ANTLR_USE_NAMESPACE(antlr)RefAST d2 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 602 |  | 
| 603 | try {      // for error handling | 
| 604 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 605 | _t = ASTNULL; | 
| 606 | switch ( _t->getType()) { | 
| 607 | case NUM_FLOAT: | 
| 608 | { | 
| 609 | d1 = _t; | 
| 610 | match(_t,NUM_FLOAT); | 
| 611 | _t = _t->getNextSibling(); | 
| 612 | #line 309 "MDTreeParser.g" | 
| 613 | dval = lexi_cast<RealType>(d1->getText()); | 
| 614 | #line 615 "MDTreeParser.cpp" | 
| 615 | break; | 
| 616 | } | 
| 617 | case NUM_DOUBLE: | 
| 618 | { | 
| 619 | d2 = _t; | 
| 620 | match(_t,NUM_DOUBLE); | 
| 621 | _t = _t->getNextSibling(); | 
| 622 | #line 310 "MDTreeParser.g" | 
| 623 | dval = lexi_cast<RealType>(d2->getText()); | 
| 624 | #line 625 "MDTreeParser.cpp" | 
| 625 | break; | 
| 626 | } | 
| 627 | default: | 
| 628 | { | 
| 629 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 630 | } | 
| 631 | } | 
| 632 | } | 
| 633 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 634 | reportError(ex); | 
| 635 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 636 | _t = _t->getNextSibling(); | 
| 637 | } | 
| 638 | _retTree = _t; | 
| 639 | return dval; | 
| 640 | } | 
| 641 |  | 
| 642 | RealType  MDTreeParser::doubleNumber(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 643 | #line 302 "MDTreeParser.g" | 
| 644 | RealType dval; | 
| 645 | #line 646 "MDTreeParser.cpp" | 
| 646 | ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumber_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 647 | ANTLR_USE_NAMESPACE(antlr)RefAST ic = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 648 | ANTLR_USE_NAMESPACE(antlr)RefAST fc = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 649 |  | 
| 650 | try {      // for error handling | 
| 651 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 652 | _t = ASTNULL; | 
| 653 | switch ( _t->getType()) { | 
| 654 | case NUM_INT: | 
| 655 | case NUM_LONG: | 
| 656 | { | 
| 657 | ic = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 658 | intConst(_t); | 
| 659 | _t = _retTree; | 
| 660 | #line 303 "MDTreeParser.g" | 
| 661 | dval = lexi_cast<RealType>(ic->getText()); | 
| 662 | #line 663 "MDTreeParser.cpp" | 
| 663 | break; | 
| 664 | } | 
| 665 | case NUM_FLOAT: | 
| 666 | case NUM_DOUBLE: | 
| 667 | { | 
| 668 | fc = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 669 | floatConst(_t); | 
| 670 | _t = _retTree; | 
| 671 | #line 304 "MDTreeParser.g" | 
| 672 | dval = lexi_cast<RealType>(fc->getText()); | 
| 673 | #line 674 "MDTreeParser.cpp" | 
| 674 | break; | 
| 675 | } | 
| 676 | default: | 
| 677 | { | 
| 678 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 679 | } | 
| 680 | } | 
| 681 | } | 
| 682 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 683 | reportError(ex); | 
| 684 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 685 | _t = _t->getNextSibling(); | 
| 686 | } | 
| 687 | _retTree = _t; | 
| 688 | return dval; | 
| 689 | } | 
| 690 |  | 
| 691 | void MDTreeParser::moleculestatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 692 | ANTLR_USE_NAMESPACE(antlr)RefAST moleculestatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 693 |  | 
| 694 | try {      // for error handling | 
| 695 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 696 | _t = ASTNULL; | 
| 697 | switch ( _t->getType()) { | 
| 698 | case ASSIGNEQUAL: | 
| 699 | { | 
| 700 | assignment(_t); | 
| 701 | _t = _retTree; | 
| 702 | break; | 
| 703 | } | 
| 704 | case ATOM: | 
| 705 | { | 
| 706 | atomblock(_t); | 
| 707 | _t = _retTree; | 
| 708 | break; | 
| 709 | } | 
| 710 | case BOND: | 
| 711 | { | 
| 712 | bondblock(_t); | 
| 713 | _t = _retTree; | 
| 714 | break; | 
| 715 | } | 
| 716 | case BEND: | 
| 717 | { | 
| 718 | bendblock(_t); | 
| 719 | _t = _retTree; | 
| 720 | break; | 
| 721 | } | 
| 722 | case TORSION: | 
| 723 | { | 
| 724 | torsionblock(_t); | 
| 725 | _t = _retTree; | 
| 726 | break; | 
| 727 | } | 
| 728 | case INVERSION: | 
| 729 | { | 
| 730 | inversionblock(_t); | 
| 731 | _t = _retTree; | 
| 732 | break; | 
| 733 | } | 
| 734 | case RIGIDBODY: | 
| 735 | { | 
| 736 | rigidbodyblock(_t); | 
| 737 | _t = _retTree; | 
| 738 | break; | 
| 739 | } | 
| 740 | case CUTOFFGROUP: | 
| 741 | { | 
| 742 | cutoffgroupblock(_t); | 
| 743 | _t = _retTree; | 
| 744 | break; | 
| 745 | } | 
| 746 | case FRAGMENT: | 
| 747 | { | 
| 748 | fragmentblock(_t); | 
| 749 | _t = _retTree; | 
| 750 | break; | 
| 751 | } | 
| 752 | default: | 
| 753 | { | 
| 754 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 755 | } | 
| 756 | } | 
| 757 | } | 
| 758 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 759 | reportError(ex); | 
| 760 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 761 | _t = _t->getNextSibling(); | 
| 762 | } | 
| 763 | _retTree = _t; | 
| 764 | } | 
| 765 |  | 
| 766 | void MDTreeParser::atomblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 767 | ANTLR_USE_NAMESPACE(antlr)RefAST atomblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 768 | #line 119 "MDTreeParser.g" | 
| 769 |  | 
| 770 | int index; | 
| 771 |  | 
| 772 | #line 773 "MDTreeParser.cpp" | 
| 773 |  | 
| 774 | try {      // for error handling | 
| 775 | ANTLR_USE_NAMESPACE(antlr)RefAST __t39 = _t; | 
| 776 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp20_AST_in = _t; | 
| 777 | match(_t,ATOM); | 
| 778 | _t = _t->getFirstChild(); | 
| 779 | index=intConst(_t); | 
| 780 | _t = _retTree; | 
| 781 | #line 123 "MDTreeParser.g" | 
| 782 | AtomStamp* currAtomStamp = new AtomStamp(index); blockStack.push(currAtomStamp); | 
| 783 | #line 784 "MDTreeParser.cpp" | 
| 784 | { // ( ... )* | 
| 785 | for (;;) { | 
| 786 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 787 | _t = ASTNULL; | 
| 788 | if ((_t->getType() == POSITION || _t->getType() == ORIENTATION || _t->getType() == ASSIGNEQUAL)) { | 
| 789 | atomstatement(_t); | 
| 790 | _t = _retTree; | 
| 791 | } | 
| 792 | else { | 
| 793 | goto _loop41; | 
| 794 | } | 
| 795 |  | 
| 796 | } | 
| 797 | _loop41:; | 
| 798 | } // ( ... )* | 
| 799 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp21_AST_in = _t; | 
| 800 | match(_t,ENDBLOCK); | 
| 801 | _t = _t->getNextSibling(); | 
| 802 | _t = __t39; | 
| 803 | _t = _t->getNextSibling(); | 
| 804 | #line 125 "MDTreeParser.g" | 
| 805 |  | 
| 806 | blockStack.top()->validate(); | 
| 807 | blockStack.pop(); | 
| 808 | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 809 | currMoleculeStamp->addAtomStamp(currAtomStamp); | 
| 810 |  | 
| 811 | #line 812 "MDTreeParser.cpp" | 
| 812 | } | 
| 813 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 814 | reportError(ex); | 
| 815 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 816 | _t = _t->getNextSibling(); | 
| 817 | } | 
| 818 | _retTree = _t; | 
| 819 | } | 
| 820 |  | 
| 821 | void MDTreeParser::bondblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 822 | ANTLR_USE_NAMESPACE(antlr)RefAST bondblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 823 |  | 
| 824 | try {      // for error handling | 
| 825 | ANTLR_USE_NAMESPACE(antlr)RefAST __t46 = _t; | 
| 826 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp22_AST_in = _t; | 
| 827 | match(_t,BOND); | 
| 828 | _t = _t->getFirstChild(); | 
| 829 | #line 145 "MDTreeParser.g" | 
| 830 | BondStamp* currBondStamp = new BondStamp(); blockStack.push(currBondStamp); | 
| 831 | #line 832 "MDTreeParser.cpp" | 
| 832 | { // ( ... )* | 
| 833 | for (;;) { | 
| 834 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 835 | _t = ASTNULL; | 
| 836 | if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { | 
| 837 | bondstatement(_t); | 
| 838 | _t = _retTree; | 
| 839 | } | 
| 840 | else { | 
| 841 | goto _loop48; | 
| 842 | } | 
| 843 |  | 
| 844 | } | 
| 845 | _loop48:; | 
| 846 | } // ( ... )* | 
| 847 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp23_AST_in = _t; | 
| 848 | match(_t,ENDBLOCK); | 
| 849 | _t = _t->getNextSibling(); | 
| 850 | _t = __t46; | 
| 851 | _t = _t->getNextSibling(); | 
| 852 | #line 147 "MDTreeParser.g" | 
| 853 |  | 
| 854 | blockStack.pop(); | 
| 855 | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 856 | currMoleculeStamp->addBondStamp(currBondStamp); | 
| 857 |  | 
| 858 | #line 859 "MDTreeParser.cpp" | 
| 859 | } | 
| 860 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 861 | reportError(ex); | 
| 862 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 863 | _t = _t->getNextSibling(); | 
| 864 | } | 
| 865 | _retTree = _t; | 
| 866 | } | 
| 867 |  | 
| 868 | void MDTreeParser::bendblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 869 | ANTLR_USE_NAMESPACE(antlr)RefAST bendblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 870 |  | 
| 871 | try {      // for error handling | 
| 872 | ANTLR_USE_NAMESPACE(antlr)RefAST __t52 = _t; | 
| 873 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp24_AST_in = _t; | 
| 874 | match(_t,BEND); | 
| 875 | _t = _t->getFirstChild(); | 
| 876 | #line 163 "MDTreeParser.g" | 
| 877 | BendStamp* currBendStamp = new BendStamp(); blockStack.push(currBendStamp); | 
| 878 | #line 879 "MDTreeParser.cpp" | 
| 879 | { // ( ... )* | 
| 880 | for (;;) { | 
| 881 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 882 | _t = ASTNULL; | 
| 883 | if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { | 
| 884 | bendstatement(_t); | 
| 885 | _t = _retTree; | 
| 886 | } | 
| 887 | else { | 
| 888 | goto _loop54; | 
| 889 | } | 
| 890 |  | 
| 891 | } | 
| 892 | _loop54:; | 
| 893 | } // ( ... )* | 
| 894 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp25_AST_in = _t; | 
| 895 | match(_t,ENDBLOCK); | 
| 896 | _t = _t->getNextSibling(); | 
| 897 | _t = __t52; | 
| 898 | _t = _t->getNextSibling(); | 
| 899 | #line 165 "MDTreeParser.g" | 
| 900 |  | 
| 901 | blockStack.top()->validate(); | 
| 902 | blockStack.pop(); | 
| 903 | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 904 | currMoleculeStamp->addBendStamp(currBendStamp); | 
| 905 |  | 
| 906 | #line 907 "MDTreeParser.cpp" | 
| 907 | } | 
| 908 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 909 | reportError(ex); | 
| 910 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 911 | _t = _t->getNextSibling(); | 
| 912 | } | 
| 913 | _retTree = _t; | 
| 914 | } | 
| 915 |  | 
| 916 | void MDTreeParser::torsionblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 917 | ANTLR_USE_NAMESPACE(antlr)RefAST torsionblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 918 |  | 
| 919 | try {      // for error handling | 
| 920 | ANTLR_USE_NAMESPACE(antlr)RefAST __t58 = _t; | 
| 921 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp26_AST_in = _t; | 
| 922 | match(_t,TORSION); | 
| 923 | _t = _t->getFirstChild(); | 
| 924 | #line 182 "MDTreeParser.g" | 
| 925 | TorsionStamp* currTorsionStamp = new TorsionStamp(); blockStack.push(currTorsionStamp); | 
| 926 | #line 927 "MDTreeParser.cpp" | 
| 927 | { // ( ... )* | 
| 928 | for (;;) { | 
| 929 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 930 | _t = ASTNULL; | 
| 931 | if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { | 
| 932 | torsionstatement(_t); | 
| 933 | _t = _retTree; | 
| 934 | } | 
| 935 | else { | 
| 936 | goto _loop60; | 
| 937 | } | 
| 938 |  | 
| 939 | } | 
| 940 | _loop60:; | 
| 941 | } // ( ... )* | 
| 942 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp27_AST_in = _t; | 
| 943 | match(_t,ENDBLOCK); | 
| 944 | _t = _t->getNextSibling(); | 
| 945 | _t = __t58; | 
| 946 | _t = _t->getNextSibling(); | 
| 947 | #line 184 "MDTreeParser.g" | 
| 948 |  | 
| 949 | blockStack.top()->validate(); | 
| 950 | blockStack.pop(); | 
| 951 | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 952 | currMoleculeStamp->addTorsionStamp(currTorsionStamp); | 
| 953 |  | 
| 954 | #line 955 "MDTreeParser.cpp" | 
| 955 | } | 
| 956 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 957 | reportError(ex); | 
| 958 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 959 | _t = _t->getNextSibling(); | 
| 960 | } | 
| 961 | _retTree = _t; | 
| 962 | } | 
| 963 |  | 
| 964 | void MDTreeParser::inversionblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 965 | ANTLR_USE_NAMESPACE(antlr)RefAST inversionblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 966 |  | 
| 967 | try {      // for error handling | 
| 968 | ANTLR_USE_NAMESPACE(antlr)RefAST __t64 = _t; | 
| 969 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp28_AST_in = _t; | 
| 970 | match(_t,INVERSION); | 
| 971 | _t = _t->getFirstChild(); | 
| 972 | #line 201 "MDTreeParser.g" | 
| 973 | InversionStamp* currInversionStamp = new InversionStamp(); blockStack.push(currInversionStamp); | 
| 974 | #line 975 "MDTreeParser.cpp" | 
| 975 | { // ( ... )* | 
| 976 | for (;;) { | 
| 977 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 978 | _t = ASTNULL; | 
| 979 | if ((_t->getType() == CENTER || _t->getType() == SATELLITES || _t->getType() == ASSIGNEQUAL)) { | 
| 980 | inversionstatement(_t); | 
| 981 | _t = _retTree; | 
| 982 | } | 
| 983 | else { | 
| 984 | goto _loop66; | 
| 985 | } | 
| 986 |  | 
| 987 | } | 
| 988 | _loop66:; | 
| 989 | } // ( ... )* | 
| 990 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp29_AST_in = _t; | 
| 991 | match(_t,ENDBLOCK); | 
| 992 | _t = _t->getNextSibling(); | 
| 993 | _t = __t64; | 
| 994 | _t = _t->getNextSibling(); | 
| 995 | #line 203 "MDTreeParser.g" | 
| 996 |  | 
| 997 | blockStack.top()->validate(); | 
| 998 | blockStack.pop(); | 
| 999 | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1000 | currMoleculeStamp->addInversionStamp(currInversionStamp); | 
| 1001 |  | 
| 1002 | #line 1003 "MDTreeParser.cpp" | 
| 1003 | } | 
| 1004 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1005 | reportError(ex); | 
| 1006 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1007 | _t = _t->getNextSibling(); | 
| 1008 | } | 
| 1009 | _retTree = _t; | 
| 1010 | } | 
| 1011 |  | 
| 1012 | void MDTreeParser::rigidbodyblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1013 | ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodyblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1014 | #line 222 "MDTreeParser.g" | 
| 1015 |  | 
| 1016 | int index; | 
| 1017 |  | 
| 1018 | #line 1019 "MDTreeParser.cpp" | 
| 1019 |  | 
| 1020 | try {      // for error handling | 
| 1021 | ANTLR_USE_NAMESPACE(antlr)RefAST __t71 = _t; | 
| 1022 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp30_AST_in = _t; | 
| 1023 | match(_t,RIGIDBODY); | 
| 1024 | _t = _t->getFirstChild(); | 
| 1025 | index=intConst(_t); | 
| 1026 | _t = _retTree; | 
| 1027 | #line 226 "MDTreeParser.g" | 
| 1028 | RigidBodyStamp* currRigidBodyStamp = new RigidBodyStamp(index); blockStack.push(currRigidBodyStamp); | 
| 1029 | #line 1030 "MDTreeParser.cpp" | 
| 1030 | { // ( ... )* | 
| 1031 | for (;;) { | 
| 1032 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1033 | _t = ASTNULL; | 
| 1034 | if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { | 
| 1035 | rigidbodystatement(_t); | 
| 1036 | _t = _retTree; | 
| 1037 | } | 
| 1038 | else { | 
| 1039 | goto _loop73; | 
| 1040 | } | 
| 1041 |  | 
| 1042 | } | 
| 1043 | _loop73:; | 
| 1044 | } // ( ... )* | 
| 1045 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp31_AST_in = _t; | 
| 1046 | match(_t,ENDBLOCK); | 
| 1047 | _t = _t->getNextSibling(); | 
| 1048 | _t = __t71; | 
| 1049 | _t = _t->getNextSibling(); | 
| 1050 | #line 228 "MDTreeParser.g" | 
| 1051 |  | 
| 1052 | blockStack.top()->validate(); | 
| 1053 | blockStack.pop(); | 
| 1054 | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1055 | currMoleculeStamp->addRigidBodyStamp(currRigidBodyStamp); | 
| 1056 |  | 
| 1057 | #line 1058 "MDTreeParser.cpp" | 
| 1058 | } | 
| 1059 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1060 | reportError(ex); | 
| 1061 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1062 | _t = _t->getNextSibling(); | 
| 1063 | } | 
| 1064 | _retTree = _t; | 
| 1065 | } | 
| 1066 |  | 
| 1067 | void MDTreeParser::cutoffgroupblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1068 | ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1069 |  | 
| 1070 | try {      // for error handling | 
| 1071 | ANTLR_USE_NAMESPACE(antlr)RefAST __t77 = _t; | 
| 1072 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp32_AST_in = _t; | 
| 1073 | match(_t,CUTOFFGROUP); | 
| 1074 | _t = _t->getFirstChild(); | 
| 1075 | #line 245 "MDTreeParser.g" | 
| 1076 | CutoffGroupStamp* currCutoffGroupStamp = new CutoffGroupStamp(); blockStack.push(currCutoffGroupStamp); | 
| 1077 | #line 1078 "MDTreeParser.cpp" | 
| 1078 | { // ( ... )* | 
| 1079 | for (;;) { | 
| 1080 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1081 | _t = ASTNULL; | 
| 1082 | if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { | 
| 1083 | cutoffgroupstatement(_t); | 
| 1084 | _t = _retTree; | 
| 1085 | } | 
| 1086 | else { | 
| 1087 | goto _loop79; | 
| 1088 | } | 
| 1089 |  | 
| 1090 | } | 
| 1091 | _loop79:; | 
| 1092 | } // ( ... )* | 
| 1093 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp33_AST_in = _t; | 
| 1094 | match(_t,ENDBLOCK); | 
| 1095 | _t = _t->getNextSibling(); | 
| 1096 | _t = __t77; | 
| 1097 | _t = _t->getNextSibling(); | 
| 1098 | #line 247 "MDTreeParser.g" | 
| 1099 |  | 
| 1100 | blockStack.top()->validate(); | 
| 1101 | blockStack.pop(); | 
| 1102 | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1103 | currMoleculeStamp->addCutoffGroupStamp(currCutoffGroupStamp); | 
| 1104 |  | 
| 1105 | #line 1106 "MDTreeParser.cpp" | 
| 1106 | } | 
| 1107 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1108 | reportError(ex); | 
| 1109 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1110 | _t = _t->getNextSibling(); | 
| 1111 | } | 
| 1112 | _retTree = _t; | 
| 1113 | } | 
| 1114 |  | 
| 1115 | void MDTreeParser::fragmentblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1116 | ANTLR_USE_NAMESPACE(antlr)RefAST fragmentblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1117 | #line 264 "MDTreeParser.g" | 
| 1118 | int ival; | 
| 1119 | #line 1120 "MDTreeParser.cpp" | 
| 1120 |  | 
| 1121 | try {      // for error handling | 
| 1122 | ANTLR_USE_NAMESPACE(antlr)RefAST __t83 = _t; | 
| 1123 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp34_AST_in = _t; | 
| 1124 | match(_t,FRAGMENT); | 
| 1125 | _t = _t->getFirstChild(); | 
| 1126 | ival=intConst(_t); | 
| 1127 | _t = _retTree; | 
| 1128 | #line 265 "MDTreeParser.g" | 
| 1129 | FragmentStamp* currFragmentStamp = new FragmentStamp(ival); blockStack.push(currFragmentStamp); | 
| 1130 | #line 1131 "MDTreeParser.cpp" | 
| 1131 | { // ( ... )* | 
| 1132 | for (;;) { | 
| 1133 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1134 | _t = ASTNULL; | 
| 1135 | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 1136 | fragmentstatement(_t); | 
| 1137 | _t = _retTree; | 
| 1138 | } | 
| 1139 | else { | 
| 1140 | goto _loop85; | 
| 1141 | } | 
| 1142 |  | 
| 1143 | } | 
| 1144 | _loop85:; | 
| 1145 | } // ( ... )* | 
| 1146 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp35_AST_in = _t; | 
| 1147 | match(_t,ENDBLOCK); | 
| 1148 | _t = _t->getNextSibling(); | 
| 1149 | _t = __t83; | 
| 1150 | _t = _t->getNextSibling(); | 
| 1151 | #line 267 "MDTreeParser.g" | 
| 1152 |  | 
| 1153 | blockStack.top()->validate(); | 
| 1154 | blockStack.pop(); | 
| 1155 | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1156 | currMoleculeStamp->addFragmentStamp(currFragmentStamp); | 
| 1157 |  | 
| 1158 | #line 1159 "MDTreeParser.cpp" | 
| 1159 | } | 
| 1160 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1161 | reportError(ex); | 
| 1162 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1163 | _t = _t->getNextSibling(); | 
| 1164 | } | 
| 1165 | _retTree = _t; | 
| 1166 | } | 
| 1167 |  | 
| 1168 | void MDTreeParser::atomstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1169 | ANTLR_USE_NAMESPACE(antlr)RefAST atomstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1170 | #line 133 "MDTreeParser.g" | 
| 1171 |  | 
| 1172 | vector<RealType> dvec; | 
| 1173 | AtomStamp* currAtomStamp =  static_cast<AtomStamp*>(blockStack.top()); | 
| 1174 |  | 
| 1175 |  | 
| 1176 | #line 1177 "MDTreeParser.cpp" | 
| 1177 |  | 
| 1178 | try {      // for error handling | 
| 1179 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1180 | _t = ASTNULL; | 
| 1181 | switch ( _t->getType()) { | 
| 1182 | case ASSIGNEQUAL: | 
| 1183 | { | 
| 1184 | assignment(_t); | 
| 1185 | _t = _retTree; | 
| 1186 | break; | 
| 1187 | } | 
| 1188 | case POSITION: | 
| 1189 | { | 
| 1190 | ANTLR_USE_NAMESPACE(antlr)RefAST __t43 = _t; | 
| 1191 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp36_AST_in = _t; | 
| 1192 | match(_t,POSITION); | 
| 1193 | _t = _t->getFirstChild(); | 
| 1194 | dvec=doubleNumberTuple(_t); | 
| 1195 | _t = _retTree; | 
| 1196 | _t = __t43; | 
| 1197 | _t = _t->getNextSibling(); | 
| 1198 | #line 140 "MDTreeParser.g" | 
| 1199 | currAtomStamp->setPosition(dvec); | 
| 1200 | #line 1201 "MDTreeParser.cpp" | 
| 1201 | break; | 
| 1202 | } | 
| 1203 | case ORIENTATION: | 
| 1204 | { | 
| 1205 | ANTLR_USE_NAMESPACE(antlr)RefAST __t44 = _t; | 
| 1206 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp37_AST_in = _t; | 
| 1207 | match(_t,ORIENTATION); | 
| 1208 | _t = _t->getFirstChild(); | 
| 1209 | dvec=doubleNumberTuple(_t); | 
| 1210 | _t = _retTree; | 
| 1211 | _t = __t44; | 
| 1212 | _t = _t->getNextSibling(); | 
| 1213 | #line 141 "MDTreeParser.g" | 
| 1214 | currAtomStamp->setOrientation(dvec); | 
| 1215 | #line 1216 "MDTreeParser.cpp" | 
| 1216 | break; | 
| 1217 | } | 
| 1218 | default: | 
| 1219 | { | 
| 1220 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1221 | } | 
| 1222 | } | 
| 1223 | } | 
| 1224 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1225 | reportError(ex); | 
| 1226 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1227 | _t = _t->getNextSibling(); | 
| 1228 | } | 
| 1229 | _retTree = _t; | 
| 1230 | } | 
| 1231 |  | 
| 1232 | vector<RealType>  MDTreeParser::doubleNumberTuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1233 | #line 280 "MDTreeParser.g" | 
| 1234 | vector<RealType> dvec; | 
| 1235 | #line 1236 "MDTreeParser.cpp" | 
| 1236 | ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumberTuple_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1237 | #line 280 "MDTreeParser.g" | 
| 1238 |  | 
| 1239 | RealType dval; | 
| 1240 |  | 
| 1241 | #line 1242 "MDTreeParser.cpp" | 
| 1242 |  | 
| 1243 | try {      // for error handling | 
| 1244 | { // ( ... )+ | 
| 1245 | int _cnt89=0; | 
| 1246 | for (;;) { | 
| 1247 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1248 | _t = ASTNULL; | 
| 1249 | if (((_t->getType() >= NUM_INT && _t->getType() <= NUM_DOUBLE))) { | 
| 1250 | dval=doubleNumber(_t); | 
| 1251 | _t = _retTree; | 
| 1252 | #line 284 "MDTreeParser.g" | 
| 1253 | dvec.push_back(dval); | 
| 1254 | #line 1255 "MDTreeParser.cpp" | 
| 1255 | } | 
| 1256 | else { | 
| 1257 | if ( _cnt89>=1 ) { goto _loop89; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} | 
| 1258 | } | 
| 1259 |  | 
| 1260 | _cnt89++; | 
| 1261 | } | 
| 1262 | _loop89:; | 
| 1263 | }  // ( ... )+ | 
| 1264 | } | 
| 1265 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1266 | reportError(ex); | 
| 1267 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1268 | _t = _t->getNextSibling(); | 
| 1269 | } | 
| 1270 | _retTree = _t; | 
| 1271 | return dvec; | 
| 1272 | } | 
| 1273 |  | 
| 1274 | void MDTreeParser::bondstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1275 | ANTLR_USE_NAMESPACE(antlr)RefAST bondstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1276 | #line 154 "MDTreeParser.g" | 
| 1277 |  | 
| 1278 | vector<int> ivec; | 
| 1279 | BondStamp* currBondStamp = static_cast<BondStamp*>(blockStack.top()); | 
| 1280 |  | 
| 1281 | #line 1282 "MDTreeParser.cpp" | 
| 1282 |  | 
| 1283 | try {      // for error handling | 
| 1284 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1285 | _t = ASTNULL; | 
| 1286 | switch ( _t->getType()) { | 
| 1287 | case ASSIGNEQUAL: | 
| 1288 | { | 
| 1289 | assignment(_t); | 
| 1290 | _t = _retTree; | 
| 1291 | break; | 
| 1292 | } | 
| 1293 | case MEMBERS: | 
| 1294 | { | 
| 1295 | ANTLR_USE_NAMESPACE(antlr)RefAST __t50 = _t; | 
| 1296 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp38_AST_in = _t; | 
| 1297 | match(_t,MEMBERS); | 
| 1298 | _t = _t->getFirstChild(); | 
| 1299 | ivec=inttuple(_t); | 
| 1300 | _t = _retTree; | 
| 1301 | _t = __t50; | 
| 1302 | _t = _t->getNextSibling(); | 
| 1303 | #line 160 "MDTreeParser.g" | 
| 1304 | currBondStamp->setMembers(ivec); | 
| 1305 | #line 1306 "MDTreeParser.cpp" | 
| 1306 | break; | 
| 1307 | } | 
| 1308 | default: | 
| 1309 | { | 
| 1310 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1311 | } | 
| 1312 | } | 
| 1313 | } | 
| 1314 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1315 | reportError(ex); | 
| 1316 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1317 | _t = _t->getNextSibling(); | 
| 1318 | } | 
| 1319 | _retTree = _t; | 
| 1320 | } | 
| 1321 |  | 
| 1322 | vector<int>  MDTreeParser::inttuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1323 | #line 288 "MDTreeParser.g" | 
| 1324 | vector<int> ivec; | 
| 1325 | #line 1326 "MDTreeParser.cpp" | 
| 1326 | ANTLR_USE_NAMESPACE(antlr)RefAST inttuple_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1327 | #line 288 "MDTreeParser.g" | 
| 1328 |  | 
| 1329 | int ival; | 
| 1330 |  | 
| 1331 | #line 1332 "MDTreeParser.cpp" | 
| 1332 |  | 
| 1333 | try {      // for error handling | 
| 1334 | { // ( ... )+ | 
| 1335 | int _cnt92=0; | 
| 1336 | for (;;) { | 
| 1337 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1338 | _t = ASTNULL; | 
| 1339 | if ((_t->getType() == NUM_INT || _t->getType() == NUM_LONG)) { | 
| 1340 | ival=intConst(_t); | 
| 1341 | _t = _retTree; | 
| 1342 | #line 292 "MDTreeParser.g" | 
| 1343 | ivec.push_back(ival); | 
| 1344 | #line 1345 "MDTreeParser.cpp" | 
| 1345 | } | 
| 1346 | else { | 
| 1347 | if ( _cnt92>=1 ) { goto _loop92; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} | 
| 1348 | } | 
| 1349 |  | 
| 1350 | _cnt92++; | 
| 1351 | } | 
| 1352 | _loop92:; | 
| 1353 | }  // ( ... )+ | 
| 1354 | } | 
| 1355 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1356 | reportError(ex); | 
| 1357 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1358 | _t = _t->getNextSibling(); | 
| 1359 | } | 
| 1360 | _retTree = _t; | 
| 1361 | return ivec; | 
| 1362 | } | 
| 1363 |  | 
| 1364 | void MDTreeParser::bendstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1365 | ANTLR_USE_NAMESPACE(antlr)RefAST bendstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1366 | #line 173 "MDTreeParser.g" | 
| 1367 |  | 
| 1368 | vector<int> ivec; | 
| 1369 | BendStamp* currBendStamp = static_cast<BendStamp*>(blockStack.top()); | 
| 1370 |  | 
| 1371 | #line 1372 "MDTreeParser.cpp" | 
| 1372 |  | 
| 1373 | try {      // for error handling | 
| 1374 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1375 | _t = ASTNULL; | 
| 1376 | switch ( _t->getType()) { | 
| 1377 | case ASSIGNEQUAL: | 
| 1378 | { | 
| 1379 | assignment(_t); | 
| 1380 | _t = _retTree; | 
| 1381 | break; | 
| 1382 | } | 
| 1383 | case MEMBERS: | 
| 1384 | { | 
| 1385 | ANTLR_USE_NAMESPACE(antlr)RefAST __t56 = _t; | 
| 1386 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp39_AST_in = _t; | 
| 1387 | match(_t,MEMBERS); | 
| 1388 | _t = _t->getFirstChild(); | 
| 1389 | ivec=inttuple(_t); | 
| 1390 | _t = _retTree; | 
| 1391 | _t = __t56; | 
| 1392 | _t = _t->getNextSibling(); | 
| 1393 | #line 179 "MDTreeParser.g" | 
| 1394 | currBendStamp->setMembers(ivec); | 
| 1395 | #line 1396 "MDTreeParser.cpp" | 
| 1396 | break; | 
| 1397 | } | 
| 1398 | default: | 
| 1399 | { | 
| 1400 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1401 | } | 
| 1402 | } | 
| 1403 | } | 
| 1404 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1405 | reportError(ex); | 
| 1406 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1407 | _t = _t->getNextSibling(); | 
| 1408 | } | 
| 1409 | _retTree = _t; | 
| 1410 | } | 
| 1411 |  | 
| 1412 | void MDTreeParser::torsionstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1413 | ANTLR_USE_NAMESPACE(antlr)RefAST torsionstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1414 | #line 192 "MDTreeParser.g" | 
| 1415 |  | 
| 1416 | vector<int> ivec; | 
| 1417 | TorsionStamp* currTorsionStamp = static_cast<TorsionStamp*>(blockStack.top()); | 
| 1418 |  | 
| 1419 | #line 1420 "MDTreeParser.cpp" | 
| 1420 |  | 
| 1421 | try {      // for error handling | 
| 1422 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1423 | _t = ASTNULL; | 
| 1424 | switch ( _t->getType()) { | 
| 1425 | case ASSIGNEQUAL: | 
| 1426 | { | 
| 1427 | assignment(_t); | 
| 1428 | _t = _retTree; | 
| 1429 | break; | 
| 1430 | } | 
| 1431 | case MEMBERS: | 
| 1432 | { | 
| 1433 | ANTLR_USE_NAMESPACE(antlr)RefAST __t62 = _t; | 
| 1434 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp40_AST_in = _t; | 
| 1435 | match(_t,MEMBERS); | 
| 1436 | _t = _t->getFirstChild(); | 
| 1437 | ivec=inttuple(_t); | 
| 1438 | _t = _retTree; | 
| 1439 | _t = __t62; | 
| 1440 | _t = _t->getNextSibling(); | 
| 1441 | #line 198 "MDTreeParser.g" | 
| 1442 | currTorsionStamp->setMembers(ivec); | 
| 1443 | #line 1444 "MDTreeParser.cpp" | 
| 1444 | break; | 
| 1445 | } | 
| 1446 | default: | 
| 1447 | { | 
| 1448 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1449 | } | 
| 1450 | } | 
| 1451 | } | 
| 1452 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1453 | reportError(ex); | 
| 1454 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1455 | _t = _t->getNextSibling(); | 
| 1456 | } | 
| 1457 | _retTree = _t; | 
| 1458 | } | 
| 1459 |  | 
| 1460 | void MDTreeParser::inversionstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1461 | ANTLR_USE_NAMESPACE(antlr)RefAST inversionstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1462 | #line 211 "MDTreeParser.g" | 
| 1463 |  | 
| 1464 | int icent; | 
| 1465 | vector<int> ivec; | 
| 1466 | InversionStamp* currInversionStamp = static_cast<InversionStamp*>(blockStack.top()); | 
| 1467 |  | 
| 1468 | #line 1469 "MDTreeParser.cpp" | 
| 1469 |  | 
| 1470 | try {      // for error handling | 
| 1471 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1472 | _t = ASTNULL; | 
| 1473 | switch ( _t->getType()) { | 
| 1474 | case ASSIGNEQUAL: | 
| 1475 | { | 
| 1476 | assignment(_t); | 
| 1477 | _t = _retTree; | 
| 1478 | break; | 
| 1479 | } | 
| 1480 | case CENTER: | 
| 1481 | { | 
| 1482 | ANTLR_USE_NAMESPACE(antlr)RefAST __t68 = _t; | 
| 1483 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp41_AST_in = _t; | 
| 1484 | match(_t,CENTER); | 
| 1485 | _t = _t->getFirstChild(); | 
| 1486 | icent=intConst(_t); | 
| 1487 | _t = _retTree; | 
| 1488 | _t = __t68; | 
| 1489 | _t = _t->getNextSibling(); | 
| 1490 | #line 218 "MDTreeParser.g" | 
| 1491 | currInversionStamp->setCenter(icent); | 
| 1492 | #line 1493 "MDTreeParser.cpp" | 
| 1493 | break; | 
| 1494 | } | 
| 1495 | case SATELLITES: | 
| 1496 | { | 
| 1497 | ANTLR_USE_NAMESPACE(antlr)RefAST __t69 = _t; | 
| 1498 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp42_AST_in = _t; | 
| 1499 | match(_t,SATELLITES); | 
| 1500 | _t = _t->getFirstChild(); | 
| 1501 | ivec=inttuple(_t); | 
| 1502 | _t = _retTree; | 
| 1503 | _t = __t69; | 
| 1504 | _t = _t->getNextSibling(); | 
| 1505 | #line 219 "MDTreeParser.g" | 
| 1506 | currInversionStamp->setSatellites(ivec); | 
| 1507 | #line 1508 "MDTreeParser.cpp" | 
| 1508 | break; | 
| 1509 | } | 
| 1510 | default: | 
| 1511 | { | 
| 1512 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1513 | } | 
| 1514 | } | 
| 1515 | } | 
| 1516 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1517 | reportError(ex); | 
| 1518 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1519 | _t = _t->getNextSibling(); | 
| 1520 | } | 
| 1521 | _retTree = _t; | 
| 1522 | } | 
| 1523 |  | 
| 1524 | void MDTreeParser::rigidbodystatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1525 | ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodystatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1526 | #line 236 "MDTreeParser.g" | 
| 1527 |  | 
| 1528 | vector<int> ivec; | 
| 1529 | RigidBodyStamp* currRigidBodyStamp = static_cast<RigidBodyStamp*>(blockStack.top()); | 
| 1530 |  | 
| 1531 | #line 1532 "MDTreeParser.cpp" | 
| 1532 |  | 
| 1533 | try {      // for error handling | 
| 1534 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1535 | _t = ASTNULL; | 
| 1536 | switch ( _t->getType()) { | 
| 1537 | case ASSIGNEQUAL: | 
| 1538 | { | 
| 1539 | assignment(_t); | 
| 1540 | _t = _retTree; | 
| 1541 | break; | 
| 1542 | } | 
| 1543 | case MEMBERS: | 
| 1544 | { | 
| 1545 | ANTLR_USE_NAMESPACE(antlr)RefAST __t75 = _t; | 
| 1546 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp43_AST_in = _t; | 
| 1547 | match(_t,MEMBERS); | 
| 1548 | _t = _t->getFirstChild(); | 
| 1549 | ivec=inttuple(_t); | 
| 1550 | _t = _retTree; | 
| 1551 | _t = __t75; | 
| 1552 | _t = _t->getNextSibling(); | 
| 1553 | #line 242 "MDTreeParser.g" | 
| 1554 | currRigidBodyStamp->setMembers(ivec); | 
| 1555 | #line 1556 "MDTreeParser.cpp" | 
| 1556 | break; | 
| 1557 | } | 
| 1558 | default: | 
| 1559 | { | 
| 1560 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1561 | } | 
| 1562 | } | 
| 1563 | } | 
| 1564 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1565 | reportError(ex); | 
| 1566 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1567 | _t = _t->getNextSibling(); | 
| 1568 | } | 
| 1569 | _retTree = _t; | 
| 1570 | } | 
| 1571 |  | 
| 1572 | void MDTreeParser::cutoffgroupstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1573 | ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1574 | #line 255 "MDTreeParser.g" | 
| 1575 |  | 
| 1576 | vector<int> ivec; | 
| 1577 | CutoffGroupStamp* currCutoffGroupStamp = static_cast<CutoffGroupStamp*>(blockStack.top()); | 
| 1578 |  | 
| 1579 | #line 1580 "MDTreeParser.cpp" | 
| 1580 |  | 
| 1581 | try {      // for error handling | 
| 1582 | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1583 | _t = ASTNULL; | 
| 1584 | switch ( _t->getType()) { | 
| 1585 | case ASSIGNEQUAL: | 
| 1586 | { | 
| 1587 | assignment(_t); | 
| 1588 | _t = _retTree; | 
| 1589 | break; | 
| 1590 | } | 
| 1591 | case MEMBERS: | 
| 1592 | { | 
| 1593 | ANTLR_USE_NAMESPACE(antlr)RefAST __t81 = _t; | 
| 1594 | ANTLR_USE_NAMESPACE(antlr)RefAST tmp44_AST_in = _t; | 
| 1595 | match(_t,MEMBERS); | 
| 1596 | _t = _t->getFirstChild(); | 
| 1597 | ivec=inttuple(_t); | 
| 1598 | _t = _retTree; | 
| 1599 | _t = __t81; | 
| 1600 | _t = _t->getNextSibling(); | 
| 1601 | #line 261 "MDTreeParser.g" | 
| 1602 | currCutoffGroupStamp->setMembers(ivec); | 
| 1603 | #line 1604 "MDTreeParser.cpp" | 
| 1604 | break; | 
| 1605 | } | 
| 1606 | default: | 
| 1607 | { | 
| 1608 | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1609 | } | 
| 1610 | } | 
| 1611 | } | 
| 1612 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1613 | reportError(ex); | 
| 1614 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1615 | _t = _t->getNextSibling(); | 
| 1616 | } | 
| 1617 | _retTree = _t; | 
| 1618 | } | 
| 1619 |  | 
| 1620 | void MDTreeParser::fragmentstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1621 | ANTLR_USE_NAMESPACE(antlr)RefAST fragmentstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1622 |  | 
| 1623 | try {      // for error handling | 
| 1624 | assignment(_t); | 
| 1625 | _t = _retTree; | 
| 1626 | } | 
| 1627 | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1628 | reportError(ex); | 
| 1629 | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1630 | _t = _t->getNextSibling(); | 
| 1631 | } | 
| 1632 | _retTree = _t; | 
| 1633 | } | 
| 1634 |  | 
| 1635 | void MDTreeParser::initializeASTFactory( ANTLR_USE_NAMESPACE(antlr)ASTFactory& ) | 
| 1636 | { | 
| 1637 | } | 
| 1638 | const char* MDTreeParser::tokenNames[] = { | 
| 1639 | "<0>", | 
| 1640 | "EOF", | 
| 1641 | "<2>", | 
| 1642 | "NULL_TREE_LOOKAHEAD", | 
| 1643 | "\"component\"", | 
| 1644 | "\"molecule\"", | 
| 1645 | "\"zconstraint\"", | 
| 1646 | "\"restraint\"", | 
| 1647 | "\"atom\"", | 
| 1648 | "\"bond\"", | 
| 1649 | "\"bend\"", | 
| 1650 | "\"torsion\"", | 
| 1651 | "\"inversion\"", | 
| 1652 | "\"rigidBody\"", | 
| 1653 | "\"cutoffGroup\"", | 
| 1654 | "\"fragment\"", | 
| 1655 | "\"members\"", | 
| 1656 | "\"center\"", | 
| 1657 | "\"satellites\"", | 
| 1658 | "\"position\"", | 
| 1659 | "\"orientation\"", | 
| 1660 | "\"flucQ\"", | 
| 1661 | "\"RNEMD\"", | 
| 1662 | "\"minimizer\"", | 
| 1663 | "ENDBLOCK", | 
| 1664 | "ID", | 
| 1665 | "ASSIGNEQUAL", | 
| 1666 | "SEMICOLON", | 
| 1667 | "StringLiteral", | 
| 1668 | "LCURLY", | 
| 1669 | "RCURLY", | 
| 1670 | "LBRACKET", | 
| 1671 | "RBRACKET", | 
| 1672 | "LPAREN", | 
| 1673 | "RPAREN", | 
| 1674 | "COMMA", | 
| 1675 | "NUM_INT", | 
| 1676 | "NUM_LONG", | 
| 1677 | "NUM_FLOAT", | 
| 1678 | "NUM_DOUBLE", | 
| 1679 | "DOT", | 
| 1680 | "COLON", | 
| 1681 | "QUESTIONMARK", | 
| 1682 | "Whitespace", | 
| 1683 | "Comment", | 
| 1684 | "CPPComment", | 
| 1685 | "a line directive", | 
| 1686 | "LineDirective", | 
| 1687 | "Space", | 
| 1688 | "CharLiteral", | 
| 1689 | "EndOfLine", | 
| 1690 | "Escape", | 
| 1691 | "Vocabulary", | 
| 1692 | "Digit", | 
| 1693 | "Decimal", | 
| 1694 | "HEX_DIGIT", | 
| 1695 | "EXPONENT", | 
| 1696 | "FLOAT_SUFFIX", | 
| 1697 | 0 | 
| 1698 | }; | 
| 1699 |  | 
| 1700 | const unsigned long MDTreeParser::_tokenSet_0_data_[] = { 81789168UL, 0UL, 0UL, 0UL }; | 
| 1701 | // "component" "molecule" "zconstraint" "restraint" "flucQ" "RNEMD" "minimizer" | 
| 1702 | // ASSIGNEQUAL | 
| 1703 | const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_0(_tokenSet_0_data_,4); | 
| 1704 | const unsigned long MDTreeParser::_tokenSet_1_data_[] = { 67174144UL, 0UL, 0UL, 0UL }; | 
| 1705 | // "atom" "bond" "bend" "torsion" "inversion" "rigidBody" "cutoffGroup" | 
| 1706 | // "fragment" ASSIGNEQUAL | 
| 1707 | const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_1(_tokenSet_1_data_,4); | 
| 1708 |  | 
| 1709 |  |