| 1 | < | /* $ANTLR 2.7.5 (20050406): "MDTreeParser.g" -> "MDTreeParser.cpp"$ */ | 
| 1 | > | /* $ANTLR 2.7.7 (20140107): "MDTreeParser.g" -> "MDTreeParser.cpp"$ */ | 
| 2 |  | #include "MDTreeParser.hpp" | 
| 3 |  | #include <antlr/Token.hpp> | 
| 4 |  | #include <antlr/AST.hpp> | 
| 13 |  | } | 
| 14 |  |  | 
| 15 |  | void MDTreeParser::mdfile(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 16 | < | ANTLR_USE_NAMESPACE(antlr)RefAST mdfile_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 16 | > | ANTLR_USE_NAMESPACE(antlr)RefAST mdfile_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 17 |  |  | 
| 18 |  | try {      // for error handling | 
| 19 |  | { // ( ... )* | 
| 44 |  | } | 
| 45 |  |  | 
| 46 |  | void MDTreeParser::statement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 47 | < | ANTLR_USE_NAMESPACE(antlr)RefAST statement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 47 | > | ANTLR_USE_NAMESPACE(antlr)RefAST statement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 48 |  |  | 
| 49 |  | try {      // for error handling | 
| 50 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 74 |  | _t = _retTree; | 
| 75 |  | break; | 
| 76 |  | } | 
| 77 | + | case RESTRAINT: | 
| 78 | + | { | 
| 79 | + | restraintblock(_t); | 
| 80 | + | _t = _retTree; | 
| 81 | + | break; | 
| 82 | + | } | 
| 83 | + | case FLUCQ: | 
| 84 | + | { | 
| 85 | + | flucqblock(_t); | 
| 86 | + | _t = _retTree; | 
| 87 | + | break; | 
| 88 | + | } | 
| 89 | + | case RNEMD: | 
| 90 | + | { | 
| 91 | + | rnemdblock(_t); | 
| 92 | + | _t = _retTree; | 
| 93 | + | break; | 
| 94 | + | } | 
| 95 | + | case MINIMIZER: | 
| 96 | + | { | 
| 97 | + | minimizerblock(_t); | 
| 98 | + | _t = _retTree; | 
| 99 | + | break; | 
| 100 | + | } | 
| 101 |  | default: | 
| 102 |  | { | 
| 103 |  | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 113 |  | } | 
| 114 |  |  | 
| 115 |  | void MDTreeParser::assignment(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 116 | < | ANTLR_USE_NAMESPACE(antlr)RefAST assignment_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 116 | > | ANTLR_USE_NAMESPACE(antlr)RefAST assignment_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 117 |  | ANTLR_USE_NAMESPACE(antlr)RefAST id = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 118 |  |  | 
| 119 |  | try {      // for error handling | 
| 138 |  | } | 
| 139 |  |  | 
| 140 |  | void MDTreeParser::componentblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 141 | < | ANTLR_USE_NAMESPACE(antlr)RefAST componentblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 141 | > | ANTLR_USE_NAMESPACE(antlr)RefAST componentblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 142 |  |  | 
| 143 |  | try {      // for error handling | 
| 144 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t13 = _t; | 
| 144 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t10 = _t; | 
| 145 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp2_AST_in = _t; | 
| 146 |  | match(_t,COMPONENT); | 
| 147 |  | _t = _t->getFirstChild(); | 
| 148 | < | #line 69 "MDTreeParser.g" | 
| 148 | > | #line 72 "MDTreeParser.g" | 
| 149 |  | Component* currComponet = new Component(); blockStack.push(currComponet); | 
| 150 | < | #line 127 "MDTreeParser.cpp" | 
| 150 | > | #line 151 "MDTreeParser.cpp" | 
| 151 |  | { // ( ... )* | 
| 152 |  | for (;;) { | 
| 153 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 157 |  | _t = _retTree; | 
| 158 |  | } | 
| 159 |  | else { | 
| 160 | < | goto _loop15; | 
| 160 | > | goto _loop12; | 
| 161 |  | } | 
| 162 |  |  | 
| 163 |  | } | 
| 164 | < | _loop15:; | 
| 164 | > | _loop12:; | 
| 165 |  | } // ( ... )* | 
| 166 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp3_AST_in = _t; | 
| 167 |  | match(_t,ENDBLOCK); | 
| 168 |  | _t = _t->getNextSibling(); | 
| 169 | < | _t = __t13; | 
| 169 | > | _t = __t10; | 
| 170 |  | _t = _t->getNextSibling(); | 
| 171 | < | #line 71 "MDTreeParser.g" | 
| 171 | > | #line 74 "MDTreeParser.g" | 
| 172 |  | blockStack.top()->validate();blockStack.pop(); currConf->addComponent(currComponet); | 
| 173 | < | #line 150 "MDTreeParser.cpp" | 
| 173 | > | #line 174 "MDTreeParser.cpp" | 
| 174 |  | } | 
| 175 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 176 |  | reportError(ex); | 
| 181 |  | } | 
| 182 |  |  | 
| 183 |  | void MDTreeParser::moleculeblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 184 | < | ANTLR_USE_NAMESPACE(antlr)RefAST moleculeblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 184 | > | ANTLR_USE_NAMESPACE(antlr)RefAST moleculeblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 185 |  |  | 
| 186 |  | try {      // for error handling | 
| 187 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t21 = _t; | 
| 187 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t34 = _t; | 
| 188 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp4_AST_in = _t; | 
| 189 |  | match(_t,MOLECULE); | 
| 190 |  | _t = _t->getFirstChild(); | 
| 191 | < | #line 79 "MDTreeParser.g" | 
| 191 | > | #line 103 "MDTreeParser.g" | 
| 192 |  | MoleculeStamp* currMoleculeStamp = new MoleculeStamp(); blockStack.push(currMoleculeStamp); | 
| 193 | < | #line 170 "MDTreeParser.cpp" | 
| 193 | > | #line 194 "MDTreeParser.cpp" | 
| 194 |  | { // ( ... )* | 
| 195 |  | for (;;) { | 
| 196 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 200 |  | _t = _retTree; | 
| 201 |  | } | 
| 202 |  | else { | 
| 203 | < | goto _loop23; | 
| 203 | > | goto _loop36; | 
| 204 |  | } | 
| 205 |  |  | 
| 206 |  | } | 
| 207 | < | _loop23:; | 
| 207 | > | _loop36:; | 
| 208 |  | } // ( ... )* | 
| 209 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp5_AST_in = _t; | 
| 210 |  | match(_t,ENDBLOCK); | 
| 211 |  | _t = _t->getNextSibling(); | 
| 212 | < | _t = __t21; | 
| 212 | > | _t = __t34; | 
| 213 |  | _t = _t->getNextSibling(); | 
| 214 | < | #line 81 "MDTreeParser.g" | 
| 214 | > | #line 105 "MDTreeParser.g" | 
| 215 |  | blockStack.top()->validate(); blockStack.pop(); currConf->addMoleculeStamp(currMoleculeStamp); | 
| 216 | < | #line 193 "MDTreeParser.cpp" | 
| 216 | > | #line 217 "MDTreeParser.cpp" | 
| 217 |  | } | 
| 218 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 219 |  | reportError(ex); | 
| 224 |  | } | 
| 225 |  |  | 
| 226 |  | void MDTreeParser::zconstraintblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 227 | < | ANTLR_USE_NAMESPACE(antlr)RefAST zconstraintblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 227 | > | ANTLR_USE_NAMESPACE(antlr)RefAST zconstraintblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 228 |  |  | 
| 229 |  | try {      // for error handling | 
| 230 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t17 = _t; | 
| 230 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t14 = _t; | 
| 231 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp6_AST_in = _t; | 
| 232 |  | match(_t,ZCONSTRAINT); | 
| 233 |  | _t = _t->getFirstChild(); | 
| 234 | < | #line 74 "MDTreeParser.g" | 
| 234 | > | #line 77 "MDTreeParser.g" | 
| 235 |  | ZConsStamp* currZConsStamp = new ZConsStamp(); blockStack.push(currZConsStamp); | 
| 236 | < | #line 213 "MDTreeParser.cpp" | 
| 236 | > | #line 237 "MDTreeParser.cpp" | 
| 237 |  | { // ( ... )* | 
| 238 |  | for (;;) { | 
| 239 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 243 |  | _t = _retTree; | 
| 244 |  | } | 
| 245 |  | else { | 
| 246 | < | goto _loop19; | 
| 246 | > | goto _loop16; | 
| 247 |  | } | 
| 248 |  |  | 
| 249 |  | } | 
| 250 | < | _loop19:; | 
| 250 | > | _loop16:; | 
| 251 |  | } // ( ... )* | 
| 252 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp7_AST_in = _t; | 
| 253 |  | match(_t,ENDBLOCK); | 
| 254 |  | _t = _t->getNextSibling(); | 
| 255 | < | _t = __t17; | 
| 255 | > | _t = __t14; | 
| 256 |  | _t = _t->getNextSibling(); | 
| 257 | < | #line 76 "MDTreeParser.g" | 
| 257 | > | #line 79 "MDTreeParser.g" | 
| 258 |  | blockStack.top()->validate();blockStack.pop(); currConf->addZConsStamp(currZConsStamp); | 
| 259 | < | #line 236 "MDTreeParser.cpp" | 
| 259 | > | #line 260 "MDTreeParser.cpp" | 
| 260 | > | } | 
| 261 | > | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 262 | > | reportError(ex); | 
| 263 | > | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 264 | > | _t = _t->getNextSibling(); | 
| 265 | > | } | 
| 266 | > | _retTree = _t; | 
| 267 | > | } | 
| 268 | > |  | 
| 269 | > | void MDTreeParser::restraintblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 270 | > | ANTLR_USE_NAMESPACE(antlr)RefAST restraintblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 271 | > |  | 
| 272 | > | try {      // for error handling | 
| 273 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t18 = _t; | 
| 274 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp8_AST_in = _t; | 
| 275 | > | match(_t,RESTRAINT); | 
| 276 | > | _t = _t->getFirstChild(); | 
| 277 | > | #line 82 "MDTreeParser.g" | 
| 278 | > | RestraintStamp* currRestraintStamp = new RestraintStamp(); blockStack.push(currRestraintStamp); | 
| 279 | > | #line 280 "MDTreeParser.cpp" | 
| 280 | > | { // ( ... )* | 
| 281 | > | for (;;) { | 
| 282 | > | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 283 | > | _t = ASTNULL; | 
| 284 | > | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 285 | > | assignment(_t); | 
| 286 | > | _t = _retTree; | 
| 287 | > | } | 
| 288 | > | else { | 
| 289 | > | goto _loop20; | 
| 290 | > | } | 
| 291 | > |  | 
| 292 | > | } | 
| 293 | > | _loop20:; | 
| 294 | > | } // ( ... )* | 
| 295 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp9_AST_in = _t; | 
| 296 | > | match(_t,ENDBLOCK); | 
| 297 | > | _t = _t->getNextSibling(); | 
| 298 | > | _t = __t18; | 
| 299 | > | _t = _t->getNextSibling(); | 
| 300 | > | #line 84 "MDTreeParser.g" | 
| 301 | > | blockStack.top()->validate();blockStack.pop(); currConf->addRestraintStamp(currRestraintStamp); | 
| 302 | > | #line 303 "MDTreeParser.cpp" | 
| 303 | > | } | 
| 304 | > | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 305 | > | reportError(ex); | 
| 306 | > | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 307 | > | _t = _t->getNextSibling(); | 
| 308 | > | } | 
| 309 | > | _retTree = _t; | 
| 310 | > | } | 
| 311 | > |  | 
| 312 | > | void MDTreeParser::flucqblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 313 | > | ANTLR_USE_NAMESPACE(antlr)RefAST flucqblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 314 | > |  | 
| 315 | > | try {      // for error handling | 
| 316 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t22 = _t; | 
| 317 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp10_AST_in = _t; | 
| 318 | > | match(_t,FLUCQ); | 
| 319 | > | _t = _t->getFirstChild(); | 
| 320 | > | #line 87 "MDTreeParser.g" | 
| 321 | > | FluctuatingChargeParameters* flucQpars = new FluctuatingChargeParameters(); blockStack.push(flucQpars); | 
| 322 | > | #line 323 "MDTreeParser.cpp" | 
| 323 | > | { // ( ... )* | 
| 324 | > | for (;;) { | 
| 325 | > | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 326 | > | _t = ASTNULL; | 
| 327 | > | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 328 | > | assignment(_t); | 
| 329 | > | _t = _retTree; | 
| 330 | > | } | 
| 331 | > | else { | 
| 332 | > | goto _loop24; | 
| 333 | > | } | 
| 334 | > |  | 
| 335 | > | } | 
| 336 | > | _loop24:; | 
| 337 | > | } // ( ... )* | 
| 338 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp11_AST_in = _t; | 
| 339 | > | match(_t,ENDBLOCK); | 
| 340 | > | _t = _t->getNextSibling(); | 
| 341 | > | _t = __t22; | 
| 342 | > | _t = _t->getNextSibling(); | 
| 343 | > | #line 89 "MDTreeParser.g" | 
| 344 | > | blockStack.top()->validate();blockStack.pop(); currConf->addFluctuatingChargeParameters(flucQpars); | 
| 345 | > | #line 346 "MDTreeParser.cpp" | 
| 346 |  | } | 
| 347 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 348 |  | reportError(ex); | 
| 352 |  | _retTree = _t; | 
| 353 |  | } | 
| 354 |  |  | 
| 355 | + | void MDTreeParser::rnemdblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 356 | + | ANTLR_USE_NAMESPACE(antlr)RefAST rnemdblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 357 | + |  | 
| 358 | + | try {      // for error handling | 
| 359 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t26 = _t; | 
| 360 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp12_AST_in = _t; | 
| 361 | + | match(_t,RNEMD); | 
| 362 | + | _t = _t->getFirstChild(); | 
| 363 | + | #line 92 "MDTreeParser.g" | 
| 364 | + | RNEMDParameters* rnemdPars = new RNEMDParameters(); blockStack.push(rnemdPars); | 
| 365 | + | #line 366 "MDTreeParser.cpp" | 
| 366 | + | { // ( ... )* | 
| 367 | + | for (;;) { | 
| 368 | + | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 369 | + | _t = ASTNULL; | 
| 370 | + | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 371 | + | assignment(_t); | 
| 372 | + | _t = _retTree; | 
| 373 | + | } | 
| 374 | + | else { | 
| 375 | + | goto _loop28; | 
| 376 | + | } | 
| 377 | + |  | 
| 378 | + | } | 
| 379 | + | _loop28:; | 
| 380 | + | } // ( ... )* | 
| 381 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp13_AST_in = _t; | 
| 382 | + | match(_t,ENDBLOCK); | 
| 383 | + | _t = _t->getNextSibling(); | 
| 384 | + | _t = __t26; | 
| 385 | + | _t = _t->getNextSibling(); | 
| 386 | + | #line 94 "MDTreeParser.g" | 
| 387 | + | blockStack.top()->validate();blockStack.pop(); currConf->addRNEMDParameters(rnemdPars); | 
| 388 | + | #line 389 "MDTreeParser.cpp" | 
| 389 | + | } | 
| 390 | + | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 391 | + | reportError(ex); | 
| 392 | + | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 393 | + | _t = _t->getNextSibling(); | 
| 394 | + | } | 
| 395 | + | _retTree = _t; | 
| 396 | + | } | 
| 397 | + |  | 
| 398 | + | void MDTreeParser::minimizerblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 399 | + | ANTLR_USE_NAMESPACE(antlr)RefAST minimizerblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 400 | + |  | 
| 401 | + | try {      // for error handling | 
| 402 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t30 = _t; | 
| 403 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp14_AST_in = _t; | 
| 404 | + | match(_t,MINIMIZER); | 
| 405 | + | _t = _t->getFirstChild(); | 
| 406 | + | #line 97 "MDTreeParser.g" | 
| 407 | + | MinimizerParameters* minimizerPars = new MinimizerParameters(); blockStack.push(minimizerPars); | 
| 408 | + | #line 409 "MDTreeParser.cpp" | 
| 409 | + | { // ( ... )* | 
| 410 | + | for (;;) { | 
| 411 | + | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 412 | + | _t = ASTNULL; | 
| 413 | + | if ((_t->getType() == ASSIGNEQUAL)) { | 
| 414 | + | assignment(_t); | 
| 415 | + | _t = _retTree; | 
| 416 | + | } | 
| 417 | + | else { | 
| 418 | + | goto _loop32; | 
| 419 | + | } | 
| 420 | + |  | 
| 421 | + | } | 
| 422 | + | _loop32:; | 
| 423 | + | } // ( ... )* | 
| 424 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp15_AST_in = _t; | 
| 425 | + | match(_t,ENDBLOCK); | 
| 426 | + | _t = _t->getNextSibling(); | 
| 427 | + | _t = __t30; | 
| 428 | + | _t = _t->getNextSibling(); | 
| 429 | + | #line 99 "MDTreeParser.g" | 
| 430 | + | blockStack.top()->validate();blockStack.pop(); currConf->addMinimizerParameters(minimizerPars); | 
| 431 | + | #line 432 "MDTreeParser.cpp" | 
| 432 | + | } | 
| 433 | + | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 434 | + | reportError(ex); | 
| 435 | + | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 436 | + | _t = _t->getNextSibling(); | 
| 437 | + | } | 
| 438 | + | _retTree = _t; | 
| 439 | + | } | 
| 440 | + |  | 
| 441 |  | void MDTreeParser::constant(ANTLR_USE_NAMESPACE(antlr)RefAST _t, | 
| 442 |  | ANTLR_USE_NAMESPACE(antlr)RefAST id | 
| 443 |  | ) { | 
| 444 | < | ANTLR_USE_NAMESPACE(antlr)RefAST constant_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 444 | > | ANTLR_USE_NAMESPACE(antlr)RefAST constant_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 445 |  | ANTLR_USE_NAMESPACE(antlr)RefAST str1 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 446 |  | ANTLR_USE_NAMESPACE(antlr)RefAST str2 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 447 | + | #line 50 "MDTreeParser.g" | 
| 448 |  |  | 
| 449 | + | int ival; | 
| 450 | + | RealType dval, x, y, z; | 
| 451 | + | Vector3d dvec; | 
| 452 | + |  | 
| 453 | + | #line 454 "MDTreeParser.cpp" | 
| 454 | + |  | 
| 455 |  | try {      // for error handling | 
| 456 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 457 |  | _t = ASTNULL; | 
| 458 |  | switch ( _t->getType()) { | 
| 459 | < | case OCTALINT: | 
| 460 | < | case DECIMALINT: | 
| 258 | < | case HEXADECIMALINT: | 
| 259 | < | case FLOATONE: | 
| 260 | < | case FLOATTWO: | 
| 261 | < | case MINUS: | 
| 459 | > | case NUM_INT: | 
| 460 | > | case NUM_LONG: | 
| 461 |  | { | 
| 462 | < | signedIntOrFloat(_t,id); | 
| 462 | > | ival=intConst(_t); | 
| 463 |  | _t = _retTree; | 
| 464 | + | #line 56 "MDTreeParser.g" | 
| 465 | + | blockStack.top()->assign(id->getText(), ival); | 
| 466 | + | #line 467 "MDTreeParser.cpp" | 
| 467 |  | break; | 
| 468 |  | } | 
| 469 | + | case NUM_FLOAT: | 
| 470 | + | case NUM_DOUBLE: | 
| 471 | + | { | 
| 472 | + | dval=floatConst(_t); | 
| 473 | + | _t = _retTree; | 
| 474 | + | #line 57 "MDTreeParser.g" | 
| 475 | + | blockStack.top()->assign(id->getText(), dval); | 
| 476 | + | #line 477 "MDTreeParser.cpp" | 
| 477 | + | break; | 
| 478 | + | } | 
| 479 | + | case LPAREN: | 
| 480 | + | { | 
| 481 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t8 = _t; | 
| 482 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp16_AST_in = _t; | 
| 483 | + | match(_t,LPAREN); | 
| 484 | + | _t = _t->getFirstChild(); | 
| 485 | + | x=doubleNumber(_t); | 
| 486 | + | _t = _retTree; | 
| 487 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp17_AST_in = _t; | 
| 488 | + | match(_t,COMMA); | 
| 489 | + | _t = _t->getNextSibling(); | 
| 490 | + | y=doubleNumber(_t); | 
| 491 | + | _t = _retTree; | 
| 492 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp18_AST_in = _t; | 
| 493 | + | match(_t,COMMA); | 
| 494 | + | _t = _t->getNextSibling(); | 
| 495 | + | z=doubleNumber(_t); | 
| 496 | + | _t = _retTree; | 
| 497 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp19_AST_in = _t; | 
| 498 | + | match(_t,RPAREN); | 
| 499 | + | _t = _t->getNextSibling(); | 
| 500 | + | _t = __t8; | 
| 501 | + | _t = _t->getNextSibling(); | 
| 502 | + | #line 59 "MDTreeParser.g" | 
| 503 | + | dvec.x() = x; | 
| 504 | + | dvec.y() = y; | 
| 505 | + | dvec.z() = z; | 
| 506 | + | blockStack.top()->assign(id->getText(), dvec); | 
| 507 | + |  | 
| 508 | + | #line 509 "MDTreeParser.cpp" | 
| 509 | + | break; | 
| 510 | + | } | 
| 511 |  | case ID: | 
| 512 |  | { | 
| 513 |  | str1 = _t; | 
| 514 |  | match(_t,ID); | 
| 515 |  | _t = _t->getNextSibling(); | 
| 516 | < | #line 49 "MDTreeParser.g" | 
| 516 | > | #line 64 "MDTreeParser.g" | 
| 517 |  | blockStack.top()->assign(id->getText(), str1->getText()); | 
| 518 | < | #line 275 "MDTreeParser.cpp" | 
| 518 | > | #line 519 "MDTreeParser.cpp" | 
| 519 |  | break; | 
| 520 |  | } | 
| 521 |  | case StringLiteral: | 
| 523 |  | str2 = _t; | 
| 524 |  | match(_t,StringLiteral); | 
| 525 |  | _t = _t->getNextSibling(); | 
| 526 | < | #line 50 "MDTreeParser.g" | 
| 526 | > | #line 65 "MDTreeParser.g" | 
| 527 |  | std::string s =  str2->getText(); | 
| 528 |  | s = s.substr(1, s.length()-2); | 
| 529 |  | blockStack.top()->assign(id->getText(),s); | 
| 530 |  |  | 
| 531 | < | #line 288 "MDTreeParser.cpp" | 
| 531 | > | #line 532 "MDTreeParser.cpp" | 
| 532 |  | break; | 
| 533 |  | } | 
| 534 |  | default: | 
| 545 |  | _retTree = _t; | 
| 546 |  | } | 
| 547 |  |  | 
| 548 | < | void MDTreeParser::signedIntOrFloat(ANTLR_USE_NAMESPACE(antlr)RefAST _t, | 
| 549 | < | ANTLR_USE_NAMESPACE(antlr)RefAST id | 
| 306 | < | ) { | 
| 307 | < | ANTLR_USE_NAMESPACE(antlr)RefAST signedIntOrFloat_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 308 | < | ANTLR_USE_NAMESPACE(antlr)RefAST icMinus = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 309 | < | ANTLR_USE_NAMESPACE(antlr)RefAST fcMinus = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 310 | < | ANTLR_USE_NAMESPACE(antlr)RefAST ic = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 311 | < | ANTLR_USE_NAMESPACE(antlr)RefAST fc = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 312 | < | #line 56 "MDTreeParser.g" | 
| 313 | < |  | 
| 548 | > | int  MDTreeParser::intConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 549 | > | #line 314 "MDTreeParser.g" | 
| 550 |  | int ival; | 
| 551 | < | double dval; | 
| 551 | > | #line 552 "MDTreeParser.cpp" | 
| 552 | > | ANTLR_USE_NAMESPACE(antlr)RefAST intConst_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 553 | > | ANTLR_USE_NAMESPACE(antlr)RefAST i1 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 554 | > | ANTLR_USE_NAMESPACE(antlr)RefAST i2 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 555 |  |  | 
| 317 | – | #line 318 "MDTreeParser.cpp" | 
| 318 | – |  | 
| 556 |  | try {      // for error handling | 
| 557 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 558 |  | _t = ASTNULL; | 
| 559 |  | switch ( _t->getType()) { | 
| 560 | < | case MINUS: | 
| 560 | > | case NUM_INT: | 
| 561 |  | { | 
| 562 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t9 = _t; | 
| 563 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp8_AST_in = _t; | 
| 327 | < | match(_t,MINUS); | 
| 328 | < | _t = _t->getFirstChild(); | 
| 329 | < | { | 
| 330 | < | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 331 | < | _t = ASTNULL; | 
| 332 | < | switch ( _t->getType()) { | 
| 333 | < | case OCTALINT: | 
| 334 | < | case DECIMALINT: | 
| 335 | < | case HEXADECIMALINT: | 
| 336 | < | { | 
| 337 | < | icMinus = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 338 | < | intConst(_t); | 
| 339 | < | _t = _retTree; | 
| 340 | < | #line 61 "MDTreeParser.g" | 
| 341 | < | ival = lexi_cast<int>(icMinus->getText()); ival = -ival; blockStack.top()->assign(id->getText(), ival); | 
| 342 | < | #line 343 "MDTreeParser.cpp" | 
| 343 | < | break; | 
| 344 | < | } | 
| 345 | < | case FLOATONE: | 
| 346 | < | case FLOATTWO: | 
| 347 | < | { | 
| 348 | < | fcMinus = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 349 | < | floatConst(_t); | 
| 350 | < | _t = _retTree; | 
| 351 | < | break; | 
| 352 | < | } | 
| 353 | < | default: | 
| 354 | < | { | 
| 355 | < | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 356 | < | } | 
| 357 | < | } | 
| 358 | < | } | 
| 359 | < | #line 62 "MDTreeParser.g" | 
| 360 | < | dval = lexi_cast<double>(fcMinus->getText());dval = -dval;  blockStack.top()->assign(id->getText(), dval); | 
| 361 | < | #line 362 "MDTreeParser.cpp" | 
| 362 | < | _t = __t9; | 
| 562 | > | i1 = _t; | 
| 563 | > | match(_t,NUM_INT); | 
| 564 |  | _t = _t->getNextSibling(); | 
| 565 | + | #line 315 "MDTreeParser.g" | 
| 566 | + | ival = lexi_cast<int>(i1->getText()); | 
| 567 | + | #line 568 "MDTreeParser.cpp" | 
| 568 |  | break; | 
| 569 |  | } | 
| 570 | < | case OCTALINT: | 
| 367 | < | case DECIMALINT: | 
| 368 | < | case HEXADECIMALINT: | 
| 369 | < | case FLOATONE: | 
| 370 | < | case FLOATTWO: | 
| 570 | > | case NUM_LONG: | 
| 571 |  | { | 
| 572 | < | { | 
| 573 | < | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 574 | < | _t = ASTNULL; | 
| 575 | < | switch ( _t->getType()) { | 
| 576 | < | case OCTALINT: | 
| 577 | < | case DECIMALINT: | 
| 378 | < | case HEXADECIMALINT: | 
| 379 | < | { | 
| 380 | < | ic = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 381 | < | intConst(_t); | 
| 382 | < | _t = _retTree; | 
| 383 | < | #line 64 "MDTreeParser.g" | 
| 384 | < | ival = lexi_cast<int>(ic->getText()); blockStack.top()->assign(id->getText(), ival); | 
| 385 | < | #line 386 "MDTreeParser.cpp" | 
| 386 | < | break; | 
| 387 | < | } | 
| 388 | < | case FLOATONE: | 
| 389 | < | case FLOATTWO: | 
| 390 | < | { | 
| 391 | < | fc = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 392 | < | floatConst(_t); | 
| 393 | < | _t = _retTree; | 
| 394 | < | #line 65 "MDTreeParser.g" | 
| 395 | < | dval = lexi_cast<double>(fc->getText());  blockStack.top()->assign(id->getText(), dval); | 
| 396 | < | #line 397 "MDTreeParser.cpp" | 
| 397 | < | break; | 
| 398 | < | } | 
| 399 | < | default: | 
| 400 | < | { | 
| 401 | < | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 402 | < | } | 
| 403 | < | } | 
| 404 | < | } | 
| 572 | > | i2 = _t; | 
| 573 | > | match(_t,NUM_LONG); | 
| 574 | > | _t = _t->getNextSibling(); | 
| 575 | > | #line 316 "MDTreeParser.g" | 
| 576 | > | ival = lexi_cast<int>(i2->getText()); | 
| 577 | > | #line 578 "MDTreeParser.cpp" | 
| 578 |  | break; | 
| 579 |  | } | 
| 580 |  | default: | 
| 589 |  | _t = _t->getNextSibling(); | 
| 590 |  | } | 
| 591 |  | _retTree = _t; | 
| 592 | + | return ival; | 
| 593 |  | } | 
| 594 |  |  | 
| 595 | < | int  MDTreeParser::intConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 596 | < | #line 249 "MDTreeParser.g" | 
| 597 | < | int ival; | 
| 598 | < | #line 425 "MDTreeParser.cpp" | 
| 599 | < | ANTLR_USE_NAMESPACE(antlr)RefAST intConst_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 600 | < | ANTLR_USE_NAMESPACE(antlr)RefAST oival = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 601 | < | ANTLR_USE_NAMESPACE(antlr)RefAST dival = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 428 | < | ANTLR_USE_NAMESPACE(antlr)RefAST hival = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 595 | > | RealType  MDTreeParser::floatConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 596 | > | #line 326 "MDTreeParser.g" | 
| 597 | > | RealType dval; | 
| 598 | > | #line 599 "MDTreeParser.cpp" | 
| 599 | > | ANTLR_USE_NAMESPACE(antlr)RefAST floatConst_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 600 | > | ANTLR_USE_NAMESPACE(antlr)RefAST d1 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 601 | > | ANTLR_USE_NAMESPACE(antlr)RefAST d2 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 602 |  |  | 
| 603 |  | try {      // for error handling | 
| 604 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 605 |  | _t = ASTNULL; | 
| 606 |  | switch ( _t->getType()) { | 
| 607 | < | case OCTALINT: | 
| 607 | > | case NUM_FLOAT: | 
| 608 |  | { | 
| 609 | < | oival = _t; | 
| 610 | < | match(_t,OCTALINT); | 
| 609 | > | d1 = _t; | 
| 610 | > | match(_t,NUM_FLOAT); | 
| 611 |  | _t = _t->getNextSibling(); | 
| 612 | < | #line 250 "MDTreeParser.g" | 
| 613 | < | ival = lexi_cast<int>(oival->getText()); | 
| 614 | < | #line 442 "MDTreeParser.cpp" | 
| 612 | > | #line 327 "MDTreeParser.g" | 
| 613 | > | dval = lexi_cast<RealType>(d1->getText()); | 
| 614 | > | #line 615 "MDTreeParser.cpp" | 
| 615 |  | break; | 
| 616 |  | } | 
| 617 | < | case DECIMALINT: | 
| 617 | > | case NUM_DOUBLE: | 
| 618 |  | { | 
| 619 | < | dival = _t; | 
| 620 | < | match(_t,DECIMALINT); | 
| 619 | > | d2 = _t; | 
| 620 | > | match(_t,NUM_DOUBLE); | 
| 621 |  | _t = _t->getNextSibling(); | 
| 622 | < | #line 251 "MDTreeParser.g" | 
| 623 | < | ival = lexi_cast<int>(dival->getText()); | 
| 624 | < | #line 452 "MDTreeParser.cpp" | 
| 452 | < | break; | 
| 453 | < | } | 
| 454 | < | case HEXADECIMALINT: | 
| 455 | < | { | 
| 456 | < | hival = _t; | 
| 457 | < | match(_t,HEXADECIMALINT); | 
| 458 | < | _t = _t->getNextSibling(); | 
| 459 | < | #line 252 "MDTreeParser.g" | 
| 460 | < | ival = lexi_cast<int>(hival->getText()); | 
| 461 | < | #line 462 "MDTreeParser.cpp" | 
| 622 | > | #line 328 "MDTreeParser.g" | 
| 623 | > | dval = lexi_cast<RealType>(d2->getText()); | 
| 624 | > | #line 625 "MDTreeParser.cpp" | 
| 625 |  | break; | 
| 626 |  | } | 
| 627 |  | default: | 
| 636 |  | _t = _t->getNextSibling(); | 
| 637 |  | } | 
| 638 |  | _retTree = _t; | 
| 639 | < | return ival; | 
| 639 | > | return dval; | 
| 640 |  | } | 
| 641 |  |  | 
| 642 | < | double  MDTreeParser::floatConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 643 | < | #line 264 "MDTreeParser.g" | 
| 644 | < | double dval; | 
| 645 | < | #line 483 "MDTreeParser.cpp" | 
| 646 | < | ANTLR_USE_NAMESPACE(antlr)RefAST floatConst_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 647 | < | ANTLR_USE_NAMESPACE(antlr)RefAST d1 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 648 | < | ANTLR_USE_NAMESPACE(antlr)RefAST d2 = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 642 | > | RealType  MDTreeParser::doubleNumber(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 643 | > | #line 320 "MDTreeParser.g" | 
| 644 | > | RealType dval; | 
| 645 | > | #line 646 "MDTreeParser.cpp" | 
| 646 | > | ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumber_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 647 | > | ANTLR_USE_NAMESPACE(antlr)RefAST ic = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 648 | > | ANTLR_USE_NAMESPACE(antlr)RefAST fc = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 649 |  |  | 
| 650 |  | try {      // for error handling | 
| 651 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 652 |  | _t = ASTNULL; | 
| 653 |  | switch ( _t->getType()) { | 
| 654 | < | case FLOATONE: | 
| 654 | > | case NUM_INT: | 
| 655 | > | case NUM_LONG: | 
| 656 |  | { | 
| 657 | < | d1 = _t; | 
| 658 | < | match(_t,FLOATONE); | 
| 659 | < | _t = _t->getNextSibling(); | 
| 660 | < | #line 265 "MDTreeParser.g" | 
| 661 | < | dval = lexi_cast<double>(d1->getText()); | 
| 662 | < | #line 499 "MDTreeParser.cpp" | 
| 657 | > | ic = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 658 | > | intConst(_t); | 
| 659 | > | _t = _retTree; | 
| 660 | > | #line 321 "MDTreeParser.g" | 
| 661 | > | dval = lexi_cast<RealType>(ic->getText()); | 
| 662 | > | #line 663 "MDTreeParser.cpp" | 
| 663 |  | break; | 
| 664 |  | } | 
| 665 | < | case FLOATTWO: | 
| 665 | > | case NUM_FLOAT: | 
| 666 | > | case NUM_DOUBLE: | 
| 667 |  | { | 
| 668 | < | d2 = _t; | 
| 669 | < | match(_t,FLOATTWO); | 
| 670 | < | _t = _t->getNextSibling(); | 
| 671 | < | #line 266 "MDTreeParser.g" | 
| 672 | < | dval = lexi_cast<double>(d2->getText()); | 
| 673 | < | #line 509 "MDTreeParser.cpp" | 
| 668 | > | fc = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 669 | > | floatConst(_t); | 
| 670 | > | _t = _retTree; | 
| 671 | > | #line 322 "MDTreeParser.g" | 
| 672 | > | dval = lexi_cast<RealType>(fc->getText()); | 
| 673 | > | #line 674 "MDTreeParser.cpp" | 
| 674 |  | break; | 
| 675 |  | } | 
| 676 |  | default: | 
| 689 |  | } | 
| 690 |  |  | 
| 691 |  | void MDTreeParser::moleculestatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 692 | < | ANTLR_USE_NAMESPACE(antlr)RefAST moleculestatement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 692 | > | ANTLR_USE_NAMESPACE(antlr)RefAST moleculestatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 693 |  |  | 
| 694 |  | try {      // for error handling | 
| 695 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 725 |  | _t = _retTree; | 
| 726 |  | break; | 
| 727 |  | } | 
| 728 | + | case INVERSION: | 
| 729 | + | { | 
| 730 | + | inversionblock(_t); | 
| 731 | + | _t = _retTree; | 
| 732 | + | break; | 
| 733 | + | } | 
| 734 |  | case RIGIDBODY: | 
| 735 |  | { | 
| 736 |  | rigidbodyblock(_t); | 
| 749 |  | _t = _retTree; | 
| 750 |  | break; | 
| 751 |  | } | 
| 752 | + | case CONSTRAINT: | 
| 753 | + | { | 
| 754 | + | constraintblock(_t); | 
| 755 | + | _t = _retTree; | 
| 756 | + | break; | 
| 757 | + | } | 
| 758 |  | default: | 
| 759 |  | { | 
| 760 |  | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 770 |  | } | 
| 771 |  |  | 
| 772 |  | void MDTreeParser::atomblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 773 | < | ANTLR_USE_NAMESPACE(antlr)RefAST atomblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 774 | < | #line 94 "MDTreeParser.g" | 
| 773 | > | ANTLR_USE_NAMESPACE(antlr)RefAST atomblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 774 | > | #line 120 "MDTreeParser.g" | 
| 775 |  |  | 
| 776 |  | int index; | 
| 777 |  |  | 
| 778 | < | #line 602 "MDTreeParser.cpp" | 
| 778 | > | #line 779 "MDTreeParser.cpp" | 
| 779 |  |  | 
| 780 |  | try {      // for error handling | 
| 781 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t26 = _t; | 
| 782 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp9_AST_in = _t; | 
| 781 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t39 = _t; | 
| 782 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp20_AST_in = _t; | 
| 783 |  | match(_t,ATOM); | 
| 784 |  | _t = _t->getFirstChild(); | 
| 785 |  | index=intConst(_t); | 
| 786 |  | _t = _retTree; | 
| 787 | < | #line 98 "MDTreeParser.g" | 
| 787 | > | #line 124 "MDTreeParser.g" | 
| 788 |  | AtomStamp* currAtomStamp = new AtomStamp(index); blockStack.push(currAtomStamp); | 
| 789 | < | #line 613 "MDTreeParser.cpp" | 
| 789 | > | #line 790 "MDTreeParser.cpp" | 
| 790 |  | { // ( ... )* | 
| 791 |  | for (;;) { | 
| 792 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 796 |  | _t = _retTree; | 
| 797 |  | } | 
| 798 |  | else { | 
| 799 | < | goto _loop28; | 
| 799 | > | goto _loop41; | 
| 800 |  | } | 
| 801 |  |  | 
| 802 |  | } | 
| 803 | < | _loop28:; | 
| 803 | > | _loop41:; | 
| 804 |  | } // ( ... )* | 
| 805 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp10_AST_in = _t; | 
| 805 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp21_AST_in = _t; | 
| 806 |  | match(_t,ENDBLOCK); | 
| 807 |  | _t = _t->getNextSibling(); | 
| 808 | < | _t = __t26; | 
| 808 | > | _t = __t39; | 
| 809 |  | _t = _t->getNextSibling(); | 
| 810 | < | #line 100 "MDTreeParser.g" | 
| 810 | > | #line 126 "MDTreeParser.g" | 
| 811 |  |  | 
| 812 |  | blockStack.top()->validate(); | 
| 813 |  | blockStack.pop(); | 
| 814 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 815 |  | currMoleculeStamp->addAtomStamp(currAtomStamp); | 
| 816 |  |  | 
| 817 | < | #line 641 "MDTreeParser.cpp" | 
| 817 | > | #line 818 "MDTreeParser.cpp" | 
| 818 |  | } | 
| 819 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 820 |  | reportError(ex); | 
| 825 |  | } | 
| 826 |  |  | 
| 827 |  | void MDTreeParser::bondblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 828 | < | ANTLR_USE_NAMESPACE(antlr)RefAST bondblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 828 | > | ANTLR_USE_NAMESPACE(antlr)RefAST bondblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 829 |  |  | 
| 830 |  | try {      // for error handling | 
| 831 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t33 = _t; | 
| 832 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp11_AST_in = _t; | 
| 831 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t46 = _t; | 
| 832 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp22_AST_in = _t; | 
| 833 |  | match(_t,BOND); | 
| 834 |  | _t = _t->getFirstChild(); | 
| 835 | < | #line 120 "MDTreeParser.g" | 
| 835 | > | #line 146 "MDTreeParser.g" | 
| 836 |  | BondStamp* currBondStamp = new BondStamp(); blockStack.push(currBondStamp); | 
| 837 | < | #line 661 "MDTreeParser.cpp" | 
| 837 | > | #line 838 "MDTreeParser.cpp" | 
| 838 |  | { // ( ... )* | 
| 839 |  | for (;;) { | 
| 840 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 844 |  | _t = _retTree; | 
| 845 |  | } | 
| 846 |  | else { | 
| 847 | < | goto _loop35; | 
| 847 | > | goto _loop48; | 
| 848 |  | } | 
| 849 |  |  | 
| 850 |  | } | 
| 851 | < | _loop35:; | 
| 851 | > | _loop48:; | 
| 852 |  | } // ( ... )* | 
| 853 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp12_AST_in = _t; | 
| 853 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp23_AST_in = _t; | 
| 854 |  | match(_t,ENDBLOCK); | 
| 855 |  | _t = _t->getNextSibling(); | 
| 856 | < | _t = __t33; | 
| 856 | > | _t = __t46; | 
| 857 |  | _t = _t->getNextSibling(); | 
| 858 | < | #line 122 "MDTreeParser.g" | 
| 858 | > | #line 148 "MDTreeParser.g" | 
| 859 |  |  | 
| 860 |  | blockStack.pop(); | 
| 861 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 862 |  | currMoleculeStamp->addBondStamp(currBondStamp); | 
| 863 |  |  | 
| 864 | < | #line 688 "MDTreeParser.cpp" | 
| 864 | > | #line 865 "MDTreeParser.cpp" | 
| 865 |  | } | 
| 866 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 867 |  | reportError(ex); | 
| 872 |  | } | 
| 873 |  |  | 
| 874 |  | void MDTreeParser::bendblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 875 | < | ANTLR_USE_NAMESPACE(antlr)RefAST bendblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 875 | > | ANTLR_USE_NAMESPACE(antlr)RefAST bendblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 876 |  |  | 
| 877 |  | try {      // for error handling | 
| 878 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t39 = _t; | 
| 879 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp13_AST_in = _t; | 
| 878 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t52 = _t; | 
| 879 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp24_AST_in = _t; | 
| 880 |  | match(_t,BEND); | 
| 881 |  | _t = _t->getFirstChild(); | 
| 882 | < | #line 138 "MDTreeParser.g" | 
| 882 | > | #line 164 "MDTreeParser.g" | 
| 883 |  | BendStamp* currBendStamp = new BendStamp(); blockStack.push(currBendStamp); | 
| 884 | < | #line 708 "MDTreeParser.cpp" | 
| 884 | > | #line 885 "MDTreeParser.cpp" | 
| 885 |  | { // ( ... )* | 
| 886 |  | for (;;) { | 
| 887 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 891 |  | _t = _retTree; | 
| 892 |  | } | 
| 893 |  | else { | 
| 894 | < | goto _loop41; | 
| 894 | > | goto _loop54; | 
| 895 |  | } | 
| 896 |  |  | 
| 897 |  | } | 
| 898 | < | _loop41:; | 
| 898 | > | _loop54:; | 
| 899 |  | } // ( ... )* | 
| 900 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp14_AST_in = _t; | 
| 900 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp25_AST_in = _t; | 
| 901 |  | match(_t,ENDBLOCK); | 
| 902 |  | _t = _t->getNextSibling(); | 
| 903 | < | _t = __t39; | 
| 903 | > | _t = __t52; | 
| 904 |  | _t = _t->getNextSibling(); | 
| 905 | < | #line 140 "MDTreeParser.g" | 
| 905 | > | #line 166 "MDTreeParser.g" | 
| 906 |  |  | 
| 907 |  | blockStack.top()->validate(); | 
| 908 |  | blockStack.pop(); | 
| 909 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 910 |  | currMoleculeStamp->addBendStamp(currBendStamp); | 
| 911 |  |  | 
| 912 | < | #line 736 "MDTreeParser.cpp" | 
| 912 | > | #line 913 "MDTreeParser.cpp" | 
| 913 |  | } | 
| 914 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 915 |  | reportError(ex); | 
| 920 |  | } | 
| 921 |  |  | 
| 922 |  | void MDTreeParser::torsionblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 923 | < | ANTLR_USE_NAMESPACE(antlr)RefAST torsionblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 923 | > | ANTLR_USE_NAMESPACE(antlr)RefAST torsionblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 924 |  |  | 
| 925 |  | try {      // for error handling | 
| 926 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t45 = _t; | 
| 927 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp15_AST_in = _t; | 
| 926 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t58 = _t; | 
| 927 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp26_AST_in = _t; | 
| 928 |  | match(_t,TORSION); | 
| 929 |  | _t = _t->getFirstChild(); | 
| 930 | < | #line 157 "MDTreeParser.g" | 
| 930 | > | #line 183 "MDTreeParser.g" | 
| 931 |  | TorsionStamp* currTorsionStamp = new TorsionStamp(); blockStack.push(currTorsionStamp); | 
| 932 | < | #line 756 "MDTreeParser.cpp" | 
| 932 | > | #line 933 "MDTreeParser.cpp" | 
| 933 |  | { // ( ... )* | 
| 934 |  | for (;;) { | 
| 935 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 939 |  | _t = _retTree; | 
| 940 |  | } | 
| 941 |  | else { | 
| 942 | < | goto _loop47; | 
| 942 | > | goto _loop60; | 
| 943 |  | } | 
| 944 |  |  | 
| 945 |  | } | 
| 946 | < | _loop47:; | 
| 946 | > | _loop60:; | 
| 947 |  | } // ( ... )* | 
| 948 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp16_AST_in = _t; | 
| 948 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp27_AST_in = _t; | 
| 949 |  | match(_t,ENDBLOCK); | 
| 950 |  | _t = _t->getNextSibling(); | 
| 951 | < | _t = __t45; | 
| 951 | > | _t = __t58; | 
| 952 |  | _t = _t->getNextSibling(); | 
| 953 | < | #line 159 "MDTreeParser.g" | 
| 953 | > | #line 185 "MDTreeParser.g" | 
| 954 |  |  | 
| 955 |  | blockStack.top()->validate(); | 
| 956 |  | blockStack.pop(); | 
| 957 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 958 |  | currMoleculeStamp->addTorsionStamp(currTorsionStamp); | 
| 959 |  |  | 
| 960 | < | #line 784 "MDTreeParser.cpp" | 
| 960 | > | #line 961 "MDTreeParser.cpp" | 
| 961 |  | } | 
| 962 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 963 |  | reportError(ex); | 
| 967 |  | _retTree = _t; | 
| 968 |  | } | 
| 969 |  |  | 
| 970 | + | void MDTreeParser::inversionblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 971 | + | ANTLR_USE_NAMESPACE(antlr)RefAST inversionblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 972 | + |  | 
| 973 | + | try {      // for error handling | 
| 974 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t64 = _t; | 
| 975 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp28_AST_in = _t; | 
| 976 | + | match(_t,INVERSION); | 
| 977 | + | _t = _t->getFirstChild(); | 
| 978 | + | #line 202 "MDTreeParser.g" | 
| 979 | + | InversionStamp* currInversionStamp = new InversionStamp(); blockStack.push(currInversionStamp); | 
| 980 | + | #line 981 "MDTreeParser.cpp" | 
| 981 | + | { // ( ... )* | 
| 982 | + | for (;;) { | 
| 983 | + | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 984 | + | _t = ASTNULL; | 
| 985 | + | if ((_t->getType() == CENTER || _t->getType() == SATELLITES || _t->getType() == ASSIGNEQUAL)) { | 
| 986 | + | inversionstatement(_t); | 
| 987 | + | _t = _retTree; | 
| 988 | + | } | 
| 989 | + | else { | 
| 990 | + | goto _loop66; | 
| 991 | + | } | 
| 992 | + |  | 
| 993 | + | } | 
| 994 | + | _loop66:; | 
| 995 | + | } // ( ... )* | 
| 996 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp29_AST_in = _t; | 
| 997 | + | match(_t,ENDBLOCK); | 
| 998 | + | _t = _t->getNextSibling(); | 
| 999 | + | _t = __t64; | 
| 1000 | + | _t = _t->getNextSibling(); | 
| 1001 | + | #line 204 "MDTreeParser.g" | 
| 1002 | + |  | 
| 1003 | + | blockStack.top()->validate(); | 
| 1004 | + | blockStack.pop(); | 
| 1005 | + | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1006 | + | currMoleculeStamp->addInversionStamp(currInversionStamp); | 
| 1007 | + |  | 
| 1008 | + | #line 1009 "MDTreeParser.cpp" | 
| 1009 | + | } | 
| 1010 | + | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1011 | + | reportError(ex); | 
| 1012 | + | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1013 | + | _t = _t->getNextSibling(); | 
| 1014 | + | } | 
| 1015 | + | _retTree = _t; | 
| 1016 | + | } | 
| 1017 | + |  | 
| 1018 |  | void MDTreeParser::rigidbodyblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1019 | < | ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodyblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1020 | < | #line 176 "MDTreeParser.g" | 
| 1019 | > | ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodyblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1020 | > | #line 223 "MDTreeParser.g" | 
| 1021 |  |  | 
| 1022 |  | int index; | 
| 1023 |  |  | 
| 1024 | < | #line 800 "MDTreeParser.cpp" | 
| 1024 | > | #line 1025 "MDTreeParser.cpp" | 
| 1025 |  |  | 
| 1026 |  | try {      // for error handling | 
| 1027 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t51 = _t; | 
| 1028 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp17_AST_in = _t; | 
| 1027 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t71 = _t; | 
| 1028 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp30_AST_in = _t; | 
| 1029 |  | match(_t,RIGIDBODY); | 
| 1030 |  | _t = _t->getFirstChild(); | 
| 1031 |  | index=intConst(_t); | 
| 1032 |  | _t = _retTree; | 
| 1033 | < | #line 180 "MDTreeParser.g" | 
| 1033 | > | #line 227 "MDTreeParser.g" | 
| 1034 |  | RigidBodyStamp* currRigidBodyStamp = new RigidBodyStamp(index); blockStack.push(currRigidBodyStamp); | 
| 1035 | < | #line 811 "MDTreeParser.cpp" | 
| 1035 | > | #line 1036 "MDTreeParser.cpp" | 
| 1036 |  | { // ( ... )* | 
| 1037 |  | for (;;) { | 
| 1038 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1042 |  | _t = _retTree; | 
| 1043 |  | } | 
| 1044 |  | else { | 
| 1045 | < | goto _loop53; | 
| 1045 | > | goto _loop73; | 
| 1046 |  | } | 
| 1047 |  |  | 
| 1048 |  | } | 
| 1049 | < | _loop53:; | 
| 1049 | > | _loop73:; | 
| 1050 |  | } // ( ... )* | 
| 1051 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp18_AST_in = _t; | 
| 1051 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp31_AST_in = _t; | 
| 1052 |  | match(_t,ENDBLOCK); | 
| 1053 |  | _t = _t->getNextSibling(); | 
| 1054 | < | _t = __t51; | 
| 1054 | > | _t = __t71; | 
| 1055 |  | _t = _t->getNextSibling(); | 
| 1056 | < | #line 182 "MDTreeParser.g" | 
| 1056 | > | #line 229 "MDTreeParser.g" | 
| 1057 |  |  | 
| 1058 |  | blockStack.top()->validate(); | 
| 1059 |  | blockStack.pop(); | 
| 1060 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1061 |  | currMoleculeStamp->addRigidBodyStamp(currRigidBodyStamp); | 
| 1062 |  |  | 
| 1063 | < | #line 839 "MDTreeParser.cpp" | 
| 1063 | > | #line 1064 "MDTreeParser.cpp" | 
| 1064 |  | } | 
| 1065 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1066 |  | reportError(ex); | 
| 1071 |  | } | 
| 1072 |  |  | 
| 1073 |  | void MDTreeParser::cutoffgroupblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1074 | < | ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1074 | > | ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1075 |  |  | 
| 1076 |  | try {      // for error handling | 
| 1077 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t57 = _t; | 
| 1078 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp19_AST_in = _t; | 
| 1077 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t77 = _t; | 
| 1078 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp32_AST_in = _t; | 
| 1079 |  | match(_t,CUTOFFGROUP); | 
| 1080 |  | _t = _t->getFirstChild(); | 
| 1081 | < | #line 199 "MDTreeParser.g" | 
| 1081 | > | #line 246 "MDTreeParser.g" | 
| 1082 |  | CutoffGroupStamp* currCutoffGroupStamp = new CutoffGroupStamp(); blockStack.push(currCutoffGroupStamp); | 
| 1083 | < | #line 859 "MDTreeParser.cpp" | 
| 1083 | > | #line 1084 "MDTreeParser.cpp" | 
| 1084 |  | { // ( ... )* | 
| 1085 |  | for (;;) { | 
| 1086 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1090 |  | _t = _retTree; | 
| 1091 |  | } | 
| 1092 |  | else { | 
| 1093 | < | goto _loop59; | 
| 1093 | > | goto _loop79; | 
| 1094 |  | } | 
| 1095 |  |  | 
| 1096 |  | } | 
| 1097 | < | _loop59:; | 
| 1097 | > | _loop79:; | 
| 1098 |  | } // ( ... )* | 
| 1099 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp20_AST_in = _t; | 
| 1099 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp33_AST_in = _t; | 
| 1100 |  | match(_t,ENDBLOCK); | 
| 1101 |  | _t = _t->getNextSibling(); | 
| 1102 | < | _t = __t57; | 
| 1102 | > | _t = __t77; | 
| 1103 |  | _t = _t->getNextSibling(); | 
| 1104 | < | #line 201 "MDTreeParser.g" | 
| 1104 | > | #line 248 "MDTreeParser.g" | 
| 1105 |  |  | 
| 1106 |  | blockStack.top()->validate(); | 
| 1107 |  | blockStack.pop(); | 
| 1108 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1109 |  | currMoleculeStamp->addCutoffGroupStamp(currCutoffGroupStamp); | 
| 1110 |  |  | 
| 1111 | < | #line 887 "MDTreeParser.cpp" | 
| 1111 | > | #line 1112 "MDTreeParser.cpp" | 
| 1112 |  | } | 
| 1113 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1114 |  | reportError(ex); | 
| 1119 |  | } | 
| 1120 |  |  | 
| 1121 |  | void MDTreeParser::fragmentblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1122 | < | ANTLR_USE_NAMESPACE(antlr)RefAST fragmentblock_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1123 | < | #line 218 "MDTreeParser.g" | 
| 1122 | > | ANTLR_USE_NAMESPACE(antlr)RefAST fragmentblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1123 | > | #line 265 "MDTreeParser.g" | 
| 1124 |  | int ival; | 
| 1125 | < | #line 901 "MDTreeParser.cpp" | 
| 1125 | > | #line 1126 "MDTreeParser.cpp" | 
| 1126 |  |  | 
| 1127 |  | try {      // for error handling | 
| 1128 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t63 = _t; | 
| 1129 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp21_AST_in = _t; | 
| 1128 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t83 = _t; | 
| 1129 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp34_AST_in = _t; | 
| 1130 |  | match(_t,FRAGMENT); | 
| 1131 |  | _t = _t->getFirstChild(); | 
| 1132 |  | ival=intConst(_t); | 
| 1133 |  | _t = _retTree; | 
| 1134 | < | #line 219 "MDTreeParser.g" | 
| 1134 | > | #line 266 "MDTreeParser.g" | 
| 1135 |  | FragmentStamp* currFragmentStamp = new FragmentStamp(ival); blockStack.push(currFragmentStamp); | 
| 1136 | < | #line 912 "MDTreeParser.cpp" | 
| 1136 | > | #line 1137 "MDTreeParser.cpp" | 
| 1137 |  | { // ( ... )* | 
| 1138 |  | for (;;) { | 
| 1139 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1143 |  | _t = _retTree; | 
| 1144 |  | } | 
| 1145 |  | else { | 
| 1146 | < | goto _loop65; | 
| 1146 | > | goto _loop85; | 
| 1147 |  | } | 
| 1148 |  |  | 
| 1149 |  | } | 
| 1150 | < | _loop65:; | 
| 1150 | > | _loop85:; | 
| 1151 |  | } // ( ... )* | 
| 1152 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp22_AST_in = _t; | 
| 1152 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp35_AST_in = _t; | 
| 1153 |  | match(_t,ENDBLOCK); | 
| 1154 |  | _t = _t->getNextSibling(); | 
| 1155 | < | _t = __t63; | 
| 1155 | > | _t = __t83; | 
| 1156 |  | _t = _t->getNextSibling(); | 
| 1157 | < | #line 221 "MDTreeParser.g" | 
| 1157 | > | #line 268 "MDTreeParser.g" | 
| 1158 |  |  | 
| 1159 |  | blockStack.top()->validate(); | 
| 1160 |  | blockStack.pop(); | 
| 1161 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1162 |  | currMoleculeStamp->addFragmentStamp(currFragmentStamp); | 
| 1163 |  |  | 
| 1164 | < | #line 940 "MDTreeParser.cpp" | 
| 1164 | > | #line 1165 "MDTreeParser.cpp" | 
| 1165 |  | } | 
| 1166 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1167 |  | reportError(ex); | 
| 1171 |  | _retTree = _t; | 
| 1172 |  | } | 
| 1173 |  |  | 
| 1174 | + | void MDTreeParser::constraintblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1175 | + | ANTLR_USE_NAMESPACE(antlr)RefAST constraintblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1176 | + |  | 
| 1177 | + | try {      // for error handling | 
| 1178 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t88 = _t; | 
| 1179 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp36_AST_in = _t; | 
| 1180 | + | match(_t,CONSTRAINT); | 
| 1181 | + | _t = _t->getFirstChild(); | 
| 1182 | + | #line 279 "MDTreeParser.g" | 
| 1183 | + | ConstraintStamp* currConstraintStamp = new ConstraintStamp(); blockStack.push(currConstraintStamp); | 
| 1184 | + | #line 1185 "MDTreeParser.cpp" | 
| 1185 | + | { // ( ... )* | 
| 1186 | + | for (;;) { | 
| 1187 | + | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1188 | + | _t = ASTNULL; | 
| 1189 | + | if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { | 
| 1190 | + | constraintstatement(_t); | 
| 1191 | + | _t = _retTree; | 
| 1192 | + | } | 
| 1193 | + | else { | 
| 1194 | + | goto _loop90; | 
| 1195 | + | } | 
| 1196 | + |  | 
| 1197 | + | } | 
| 1198 | + | _loop90:; | 
| 1199 | + | } // ( ... )* | 
| 1200 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp37_AST_in = _t; | 
| 1201 | + | match(_t,ENDBLOCK); | 
| 1202 | + | _t = _t->getNextSibling(); | 
| 1203 | + | _t = __t88; | 
| 1204 | + | _t = _t->getNextSibling(); | 
| 1205 | + | #line 281 "MDTreeParser.g" | 
| 1206 | + |  | 
| 1207 | + | blockStack.pop(); | 
| 1208 | + | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1209 | + | currMoleculeStamp->addConstraintStamp(currConstraintStamp); | 
| 1210 | + |  | 
| 1211 | + | #line 1212 "MDTreeParser.cpp" | 
| 1212 | + | } | 
| 1213 | + | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1214 | + | reportError(ex); | 
| 1215 | + | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1216 | + | _t = _t->getNextSibling(); | 
| 1217 | + | } | 
| 1218 | + | _retTree = _t; | 
| 1219 | + | } | 
| 1220 | + |  | 
| 1221 |  | void MDTreeParser::atomstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1222 | < | ANTLR_USE_NAMESPACE(antlr)RefAST atomstatement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1223 | < | #line 108 "MDTreeParser.g" | 
| 1222 | > | ANTLR_USE_NAMESPACE(antlr)RefAST atomstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1223 | > | #line 134 "MDTreeParser.g" | 
| 1224 |  |  | 
| 1225 | < | vector<double> dvec; | 
| 1225 | > | vector<RealType> dvec; | 
| 1226 |  | AtomStamp* currAtomStamp =  static_cast<AtomStamp*>(blockStack.top()); | 
| 1227 |  |  | 
| 1228 |  |  | 
| 1229 | < | #line 958 "MDTreeParser.cpp" | 
| 1229 | > | #line 1230 "MDTreeParser.cpp" | 
| 1230 |  |  | 
| 1231 |  | try {      // for error handling | 
| 1232 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1240 |  | } | 
| 1241 |  | case POSITION: | 
| 1242 |  | { | 
| 1243 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t30 = _t; | 
| 1244 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp23_AST_in = _t; | 
| 1243 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t43 = _t; | 
| 1244 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp38_AST_in = _t; | 
| 1245 |  | match(_t,POSITION); | 
| 1246 |  | _t = _t->getFirstChild(); | 
| 1247 | < | dvec=signedNumberTuple(_t); | 
| 1247 | > | dvec=doubleNumberTuple(_t); | 
| 1248 |  | _t = _retTree; | 
| 1249 | < | _t = __t30; | 
| 1249 | > | _t = __t43; | 
| 1250 |  | _t = _t->getNextSibling(); | 
| 1251 | < | #line 115 "MDTreeParser.g" | 
| 1251 | > | #line 141 "MDTreeParser.g" | 
| 1252 |  | currAtomStamp->setPosition(dvec); | 
| 1253 | < | #line 982 "MDTreeParser.cpp" | 
| 1253 | > | #line 1254 "MDTreeParser.cpp" | 
| 1254 |  | break; | 
| 1255 |  | } | 
| 1256 |  | case ORIENTATION: | 
| 1257 |  | { | 
| 1258 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t31 = _t; | 
| 1259 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp24_AST_in = _t; | 
| 1258 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t44 = _t; | 
| 1259 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp39_AST_in = _t; | 
| 1260 |  | match(_t,ORIENTATION); | 
| 1261 |  | _t = _t->getFirstChild(); | 
| 1262 | < | dvec=signedNumberTuple(_t); | 
| 1262 | > | dvec=doubleNumberTuple(_t); | 
| 1263 |  | _t = _retTree; | 
| 1264 | < | _t = __t31; | 
| 1264 | > | _t = __t44; | 
| 1265 |  | _t = _t->getNextSibling(); | 
| 1266 | < | #line 116 "MDTreeParser.g" | 
| 1266 | > | #line 142 "MDTreeParser.g" | 
| 1267 |  | currAtomStamp->setOrientation(dvec); | 
| 1268 | < | #line 997 "MDTreeParser.cpp" | 
| 1268 | > | #line 1269 "MDTreeParser.cpp" | 
| 1269 |  | break; | 
| 1270 |  | } | 
| 1271 |  | default: | 
| 1282 |  | _retTree = _t; | 
| 1283 |  | } | 
| 1284 |  |  | 
| 1285 | < | vector<double>  MDTreeParser::signedNumberTuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1286 | < | #line 234 "MDTreeParser.g" | 
| 1287 | < | vector<double> dvec; | 
| 1288 | < | #line 1017 "MDTreeParser.cpp" | 
| 1289 | < | ANTLR_USE_NAMESPACE(antlr)RefAST signedNumberTuple_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1290 | < | #line 234 "MDTreeParser.g" | 
| 1285 | > | vector<RealType>  MDTreeParser::doubleNumberTuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1286 | > | #line 298 "MDTreeParser.g" | 
| 1287 | > | vector<RealType> dvec; | 
| 1288 | > | #line 1289 "MDTreeParser.cpp" | 
| 1289 | > | ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumberTuple_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1290 | > | #line 298 "MDTreeParser.g" | 
| 1291 |  |  | 
| 1292 | < | double dval; | 
| 1292 | > | RealType dval; | 
| 1293 |  |  | 
| 1294 | < | #line 1023 "MDTreeParser.cpp" | 
| 1294 | > | #line 1295 "MDTreeParser.cpp" | 
| 1295 |  |  | 
| 1296 |  | try {      // for error handling | 
| 1297 |  | { // ( ... )+ | 
| 1298 | < | int _cnt69=0; | 
| 1298 | > | int _cnt95=0; | 
| 1299 |  | for (;;) { | 
| 1300 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1301 |  | _t = ASTNULL; | 
| 1302 | < | if (((_t->getType() >= OCTALINT && _t->getType() <= FLOATTWO))) { | 
| 1303 | < | dval=signedNumber(_t); | 
| 1302 | > | if (((_t->getType() >= NUM_INT && _t->getType() <= NUM_DOUBLE))) { | 
| 1303 | > | dval=doubleNumber(_t); | 
| 1304 |  | _t = _retTree; | 
| 1305 | < | #line 238 "MDTreeParser.g" | 
| 1305 | > | #line 302 "MDTreeParser.g" | 
| 1306 |  | dvec.push_back(dval); | 
| 1307 | < | #line 1036 "MDTreeParser.cpp" | 
| 1307 | > | #line 1308 "MDTreeParser.cpp" | 
| 1308 |  | } | 
| 1309 |  | else { | 
| 1310 | < | if ( _cnt69>=1 ) { goto _loop69; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} | 
| 1310 | > | if ( _cnt95>=1 ) { goto _loop95; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} | 
| 1311 |  | } | 
| 1312 |  |  | 
| 1313 | < | _cnt69++; | 
| 1313 | > | _cnt95++; | 
| 1314 |  | } | 
| 1315 | < | _loop69:; | 
| 1315 | > | _loop95:; | 
| 1316 |  | }  // ( ... )+ | 
| 1317 |  | } | 
| 1318 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1325 |  | } | 
| 1326 |  |  | 
| 1327 |  | void MDTreeParser::bondstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1328 | < | ANTLR_USE_NAMESPACE(antlr)RefAST bondstatement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1329 | < | #line 129 "MDTreeParser.g" | 
| 1328 | > | ANTLR_USE_NAMESPACE(antlr)RefAST bondstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1329 | > | #line 155 "MDTreeParser.g" | 
| 1330 |  |  | 
| 1331 |  | vector<int> ivec; | 
| 1332 |  | BondStamp* currBondStamp = static_cast<BondStamp*>(blockStack.top()); | 
| 1333 |  |  | 
| 1334 | < | #line 1063 "MDTreeParser.cpp" | 
| 1334 | > | #line 1335 "MDTreeParser.cpp" | 
| 1335 |  |  | 
| 1336 |  | try {      // for error handling | 
| 1337 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1345 |  | } | 
| 1346 |  | case MEMBERS: | 
| 1347 |  | { | 
| 1348 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t37 = _t; | 
| 1349 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp25_AST_in = _t; | 
| 1348 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t50 = _t; | 
| 1349 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp40_AST_in = _t; | 
| 1350 |  | match(_t,MEMBERS); | 
| 1351 |  | _t = _t->getFirstChild(); | 
| 1352 |  | ivec=inttuple(_t); | 
| 1353 |  | _t = _retTree; | 
| 1354 | < | _t = __t37; | 
| 1355 | < | _t = _t->getNextSibling(); | 
| 1356 | < | #line 135 "MDTreeParser.g" | 
| 1354 | > | _t = __t50; | 
| 1355 | > | _t = _t->getNextSibling(); | 
| 1356 | > | #line 161 "MDTreeParser.g" | 
| 1357 |  | currBondStamp->setMembers(ivec); | 
| 1358 | < | #line 1087 "MDTreeParser.cpp" | 
| 1358 | > | #line 1359 "MDTreeParser.cpp" | 
| 1359 |  | break; | 
| 1360 |  | } | 
| 1361 |  | default: | 
| 1373 |  | } | 
| 1374 |  |  | 
| 1375 |  | vector<int>  MDTreeParser::inttuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1376 | < | #line 241 "MDTreeParser.g" | 
| 1376 | > | #line 306 "MDTreeParser.g" | 
| 1377 |  | vector<int> ivec; | 
| 1378 | < | #line 1107 "MDTreeParser.cpp" | 
| 1379 | < | ANTLR_USE_NAMESPACE(antlr)RefAST inttuple_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1380 | < | #line 241 "MDTreeParser.g" | 
| 1378 | > | #line 1379 "MDTreeParser.cpp" | 
| 1379 | > | ANTLR_USE_NAMESPACE(antlr)RefAST inttuple_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1380 | > | #line 306 "MDTreeParser.g" | 
| 1381 |  |  | 
| 1382 |  | int ival; | 
| 1383 |  |  | 
| 1384 | < | #line 1113 "MDTreeParser.cpp" | 
| 1384 | > | #line 1385 "MDTreeParser.cpp" | 
| 1385 |  |  | 
| 1386 |  | try {      // for error handling | 
| 1387 |  | { // ( ... )+ | 
| 1388 | < | int _cnt72=0; | 
| 1388 | > | int _cnt98=0; | 
| 1389 |  | for (;;) { | 
| 1390 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1391 |  | _t = ASTNULL; | 
| 1392 | < | if (((_t->getType() >= OCTALINT && _t->getType() <= HEXADECIMALINT))) { | 
| 1392 | > | if ((_t->getType() == NUM_INT || _t->getType() == NUM_LONG)) { | 
| 1393 |  | ival=intConst(_t); | 
| 1394 |  | _t = _retTree; | 
| 1395 | < | #line 245 "MDTreeParser.g" | 
| 1395 | > | #line 310 "MDTreeParser.g" | 
| 1396 |  | ivec.push_back(ival); | 
| 1397 | < | #line 1126 "MDTreeParser.cpp" | 
| 1397 | > | #line 1398 "MDTreeParser.cpp" | 
| 1398 |  | } | 
| 1399 |  | else { | 
| 1400 | < | if ( _cnt72>=1 ) { goto _loop72; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} | 
| 1400 | > | if ( _cnt98>=1 ) { goto _loop98; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} | 
| 1401 |  | } | 
| 1402 |  |  | 
| 1403 | < | _cnt72++; | 
| 1403 | > | _cnt98++; | 
| 1404 |  | } | 
| 1405 | < | _loop72:; | 
| 1405 | > | _loop98:; | 
| 1406 |  | }  // ( ... )+ | 
| 1407 |  | } | 
| 1408 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1415 |  | } | 
| 1416 |  |  | 
| 1417 |  | void MDTreeParser::bendstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1418 | < | ANTLR_USE_NAMESPACE(antlr)RefAST bendstatement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1419 | < | #line 148 "MDTreeParser.g" | 
| 1418 | > | ANTLR_USE_NAMESPACE(antlr)RefAST bendstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1419 | > | #line 174 "MDTreeParser.g" | 
| 1420 |  |  | 
| 1421 |  | vector<int> ivec; | 
| 1422 |  | BendStamp* currBendStamp = static_cast<BendStamp*>(blockStack.top()); | 
| 1423 |  |  | 
| 1424 | < | #line 1153 "MDTreeParser.cpp" | 
| 1424 | > | #line 1425 "MDTreeParser.cpp" | 
| 1425 |  |  | 
| 1426 |  | try {      // for error handling | 
| 1427 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1435 |  | } | 
| 1436 |  | case MEMBERS: | 
| 1437 |  | { | 
| 1438 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t43 = _t; | 
| 1439 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp26_AST_in = _t; | 
| 1438 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t56 = _t; | 
| 1439 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp41_AST_in = _t; | 
| 1440 |  | match(_t,MEMBERS); | 
| 1441 |  | _t = _t->getFirstChild(); | 
| 1442 |  | ivec=inttuple(_t); | 
| 1443 |  | _t = _retTree; | 
| 1444 | < | _t = __t43; | 
| 1444 | > | _t = __t56; | 
| 1445 |  | _t = _t->getNextSibling(); | 
| 1446 | < | #line 154 "MDTreeParser.g" | 
| 1446 | > | #line 180 "MDTreeParser.g" | 
| 1447 |  | currBendStamp->setMembers(ivec); | 
| 1448 | < | #line 1177 "MDTreeParser.cpp" | 
| 1448 | > | #line 1449 "MDTreeParser.cpp" | 
| 1449 |  | break; | 
| 1450 |  | } | 
| 1451 |  | default: | 
| 1463 |  | } | 
| 1464 |  |  | 
| 1465 |  | void MDTreeParser::torsionstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1466 | < | ANTLR_USE_NAMESPACE(antlr)RefAST torsionstatement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1467 | < | #line 167 "MDTreeParser.g" | 
| 1466 | > | ANTLR_USE_NAMESPACE(antlr)RefAST torsionstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1467 | > | #line 193 "MDTreeParser.g" | 
| 1468 |  |  | 
| 1469 |  | vector<int> ivec; | 
| 1470 |  | TorsionStamp* currTorsionStamp = static_cast<TorsionStamp*>(blockStack.top()); | 
| 1471 |  |  | 
| 1472 | < | #line 1201 "MDTreeParser.cpp" | 
| 1472 | > | #line 1473 "MDTreeParser.cpp" | 
| 1473 |  |  | 
| 1474 |  | try {      // for error handling | 
| 1475 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1483 |  | } | 
| 1484 |  | case MEMBERS: | 
| 1485 |  | { | 
| 1486 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t49 = _t; | 
| 1487 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp27_AST_in = _t; | 
| 1486 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t62 = _t; | 
| 1487 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp42_AST_in = _t; | 
| 1488 |  | match(_t,MEMBERS); | 
| 1489 |  | _t = _t->getFirstChild(); | 
| 1490 |  | ivec=inttuple(_t); | 
| 1491 |  | _t = _retTree; | 
| 1492 | < | _t = __t49; | 
| 1492 | > | _t = __t62; | 
| 1493 |  | _t = _t->getNextSibling(); | 
| 1494 | < | #line 173 "MDTreeParser.g" | 
| 1494 | > | #line 199 "MDTreeParser.g" | 
| 1495 |  | currTorsionStamp->setMembers(ivec); | 
| 1496 | < | #line 1225 "MDTreeParser.cpp" | 
| 1496 | > | #line 1497 "MDTreeParser.cpp" | 
| 1497 |  | break; | 
| 1498 |  | } | 
| 1499 |  | default: | 
| 1510 |  | _retTree = _t; | 
| 1511 |  | } | 
| 1512 |  |  | 
| 1513 | + | void MDTreeParser::inversionstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1514 | + | ANTLR_USE_NAMESPACE(antlr)RefAST inversionstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1515 | + | #line 212 "MDTreeParser.g" | 
| 1516 | + |  | 
| 1517 | + | int icent; | 
| 1518 | + | vector<int> ivec; | 
| 1519 | + | InversionStamp* currInversionStamp = static_cast<InversionStamp*>(blockStack.top()); | 
| 1520 | + |  | 
| 1521 | + | #line 1522 "MDTreeParser.cpp" | 
| 1522 | + |  | 
| 1523 | + | try {      // for error handling | 
| 1524 | + | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1525 | + | _t = ASTNULL; | 
| 1526 | + | switch ( _t->getType()) { | 
| 1527 | + | case ASSIGNEQUAL: | 
| 1528 | + | { | 
| 1529 | + | assignment(_t); | 
| 1530 | + | _t = _retTree; | 
| 1531 | + | break; | 
| 1532 | + | } | 
| 1533 | + | case CENTER: | 
| 1534 | + | { | 
| 1535 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t68 = _t; | 
| 1536 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp43_AST_in = _t; | 
| 1537 | + | match(_t,CENTER); | 
| 1538 | + | _t = _t->getFirstChild(); | 
| 1539 | + | icent=intConst(_t); | 
| 1540 | + | _t = _retTree; | 
| 1541 | + | _t = __t68; | 
| 1542 | + | _t = _t->getNextSibling(); | 
| 1543 | + | #line 219 "MDTreeParser.g" | 
| 1544 | + | currInversionStamp->setCenter(icent); | 
| 1545 | + | #line 1546 "MDTreeParser.cpp" | 
| 1546 | + | break; | 
| 1547 | + | } | 
| 1548 | + | case SATELLITES: | 
| 1549 | + | { | 
| 1550 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t69 = _t; | 
| 1551 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp44_AST_in = _t; | 
| 1552 | + | match(_t,SATELLITES); | 
| 1553 | + | _t = _t->getFirstChild(); | 
| 1554 | + | ivec=inttuple(_t); | 
| 1555 | + | _t = _retTree; | 
| 1556 | + | _t = __t69; | 
| 1557 | + | _t = _t->getNextSibling(); | 
| 1558 | + | #line 220 "MDTreeParser.g" | 
| 1559 | + | currInversionStamp->setSatellites(ivec); | 
| 1560 | + | #line 1561 "MDTreeParser.cpp" | 
| 1561 | + | break; | 
| 1562 | + | } | 
| 1563 | + | default: | 
| 1564 | + | { | 
| 1565 | + | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1566 | + | } | 
| 1567 | + | } | 
| 1568 | + | } | 
| 1569 | + | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1570 | + | reportError(ex); | 
| 1571 | + | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1572 | + | _t = _t->getNextSibling(); | 
| 1573 | + | } | 
| 1574 | + | _retTree = _t; | 
| 1575 | + | } | 
| 1576 | + |  | 
| 1577 |  | void MDTreeParser::rigidbodystatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1578 | < | ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodystatement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1579 | < | #line 190 "MDTreeParser.g" | 
| 1578 | > | ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodystatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1579 | > | #line 237 "MDTreeParser.g" | 
| 1580 |  |  | 
| 1581 |  | vector<int> ivec; | 
| 1582 |  | RigidBodyStamp* currRigidBodyStamp = static_cast<RigidBodyStamp*>(blockStack.top()); | 
| 1583 |  |  | 
| 1584 | < | #line 1249 "MDTreeParser.cpp" | 
| 1584 | > | #line 1585 "MDTreeParser.cpp" | 
| 1585 |  |  | 
| 1586 |  | try {      // for error handling | 
| 1587 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1595 |  | } | 
| 1596 |  | case MEMBERS: | 
| 1597 |  | { | 
| 1598 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t55 = _t; | 
| 1599 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp28_AST_in = _t; | 
| 1598 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t75 = _t; | 
| 1599 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp45_AST_in = _t; | 
| 1600 |  | match(_t,MEMBERS); | 
| 1601 |  | _t = _t->getFirstChild(); | 
| 1602 |  | ivec=inttuple(_t); | 
| 1603 |  | _t = _retTree; | 
| 1604 | < | _t = __t55; | 
| 1604 | > | _t = __t75; | 
| 1605 |  | _t = _t->getNextSibling(); | 
| 1606 | < | #line 196 "MDTreeParser.g" | 
| 1606 | > | #line 243 "MDTreeParser.g" | 
| 1607 |  | currRigidBodyStamp->setMembers(ivec); | 
| 1608 | < | #line 1273 "MDTreeParser.cpp" | 
| 1608 | > | #line 1609 "MDTreeParser.cpp" | 
| 1609 |  | break; | 
| 1610 |  | } | 
| 1611 |  | default: | 
| 1623 |  | } | 
| 1624 |  |  | 
| 1625 |  | void MDTreeParser::cutoffgroupstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1626 | < | ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupstatement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1627 | < | #line 209 "MDTreeParser.g" | 
| 1626 | > | ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1627 | > | #line 256 "MDTreeParser.g" | 
| 1628 |  |  | 
| 1629 |  | vector<int> ivec; | 
| 1630 |  | CutoffGroupStamp* currCutoffGroupStamp = static_cast<CutoffGroupStamp*>(blockStack.top()); | 
| 1631 |  |  | 
| 1632 | < | #line 1297 "MDTreeParser.cpp" | 
| 1632 | > | #line 1633 "MDTreeParser.cpp" | 
| 1633 |  |  | 
| 1634 |  | try {      // for error handling | 
| 1635 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1643 |  | } | 
| 1644 |  | case MEMBERS: | 
| 1645 |  | { | 
| 1646 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t61 = _t; | 
| 1647 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp29_AST_in = _t; | 
| 1646 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t81 = _t; | 
| 1647 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp46_AST_in = _t; | 
| 1648 |  | match(_t,MEMBERS); | 
| 1649 |  | _t = _t->getFirstChild(); | 
| 1650 |  | ivec=inttuple(_t); | 
| 1651 |  | _t = _retTree; | 
| 1652 | < | _t = __t61; | 
| 1652 | > | _t = __t81; | 
| 1653 |  | _t = _t->getNextSibling(); | 
| 1654 | < | #line 215 "MDTreeParser.g" | 
| 1654 | > | #line 262 "MDTreeParser.g" | 
| 1655 |  | currCutoffGroupStamp->setMembers(ivec); | 
| 1656 | < | #line 1321 "MDTreeParser.cpp" | 
| 1656 | > | #line 1657 "MDTreeParser.cpp" | 
| 1657 |  | break; | 
| 1658 |  | } | 
| 1659 |  | default: | 
| 1671 |  | } | 
| 1672 |  |  | 
| 1673 |  | void MDTreeParser::fragmentstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1674 | < | ANTLR_USE_NAMESPACE(antlr)RefAST fragmentstatement_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1674 | > | ANTLR_USE_NAMESPACE(antlr)RefAST fragmentstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1675 |  |  | 
| 1676 |  | try {      // for error handling | 
| 1677 |  | assignment(_t); | 
| 1685 |  | _retTree = _t; | 
| 1686 |  | } | 
| 1687 |  |  | 
| 1688 | < | double  MDTreeParser::signedNumber(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1689 | < | #line 256 "MDTreeParser.g" | 
| 1690 | < | double dval; | 
| 1355 | < | #line 1356 "MDTreeParser.cpp" | 
| 1356 | < | ANTLR_USE_NAMESPACE(antlr)RefAST signedNumber_AST_in = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1357 | < | ANTLR_USE_NAMESPACE(antlr)RefAST ic = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 1358 | < | ANTLR_USE_NAMESPACE(antlr)RefAST fc = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 1688 | > | void MDTreeParser::constraintstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1689 | > | ANTLR_USE_NAMESPACE(antlr)RefAST constraintstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1690 | > | #line 288 "MDTreeParser.g" | 
| 1691 |  |  | 
| 1692 | + | vector<int> ivec; | 
| 1693 | + | ConstraintStamp* currConstraintStamp = static_cast<ConstraintStamp*>(blockStack.top()); | 
| 1694 | + |  | 
| 1695 | + | #line 1696 "MDTreeParser.cpp" | 
| 1696 | + |  | 
| 1697 |  | try {      // for error handling | 
| 1698 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1699 |  | _t = ASTNULL; | 
| 1700 |  | switch ( _t->getType()) { | 
| 1701 | < | case OCTALINT: | 
| 1365 | < | case DECIMALINT: | 
| 1366 | < | case HEXADECIMALINT: | 
| 1701 | > | case ASSIGNEQUAL: | 
| 1702 |  | { | 
| 1703 | < | ic = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1369 | < | intConst(_t); | 
| 1703 | > | assignment(_t); | 
| 1704 |  | _t = _retTree; | 
| 1371 | – | #line 258 "MDTreeParser.g" | 
| 1372 | – | dval = lexi_cast<double>(ic->getText()); | 
| 1373 | – | #line 1374 "MDTreeParser.cpp" | 
| 1705 |  | break; | 
| 1706 |  | } | 
| 1707 | < | case FLOATONE: | 
| 1377 | < | case FLOATTWO: | 
| 1707 | > | case MEMBERS: | 
| 1708 |  | { | 
| 1709 | < | fc = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1710 | < | floatConst(_t); | 
| 1709 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t92 = _t; | 
| 1710 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp47_AST_in = _t; | 
| 1711 | > | match(_t,MEMBERS); | 
| 1712 | > | _t = _t->getFirstChild(); | 
| 1713 | > | ivec=inttuple(_t); | 
| 1714 |  | _t = _retTree; | 
| 1715 | < | #line 259 "MDTreeParser.g" | 
| 1716 | < | dval = lexi_cast<double>(fc->getText()); | 
| 1717 | < | #line 1385 "MDTreeParser.cpp" | 
| 1715 | > | _t = __t92; | 
| 1716 | > | _t = _t->getNextSibling(); | 
| 1717 | > | #line 294 "MDTreeParser.g" | 
| 1718 | > | currConstraintStamp->setMembers(ivec); | 
| 1719 | > | #line 1720 "MDTreeParser.cpp" | 
| 1720 |  | break; | 
| 1721 |  | } | 
| 1722 |  | default: | 
| 1731 |  | _t = _t->getNextSibling(); | 
| 1732 |  | } | 
| 1733 |  | _retTree = _t; | 
| 1399 | – | return dval; | 
| 1734 |  | } | 
| 1735 |  |  | 
| 1736 |  | void MDTreeParser::initializeASTFactory( ANTLR_USE_NAMESPACE(antlr)ASTFactory& ) | 
| 1744 |  | "\"component\"", | 
| 1745 |  | "\"molecule\"", | 
| 1746 |  | "\"zconstraint\"", | 
| 1747 | + | "\"restraint\"", | 
| 1748 |  | "\"atom\"", | 
| 1749 |  | "\"bond\"", | 
| 1750 |  | "\"bend\"", | 
| 1751 |  | "\"torsion\"", | 
| 1752 | + | "\"inversion\"", | 
| 1753 |  | "\"rigidBody\"", | 
| 1754 |  | "\"cutoffGroup\"", | 
| 1755 | + | "\"constraint\"", | 
| 1756 | + | "\"distance\"", | 
| 1757 |  | "\"fragment\"", | 
| 1758 |  | "\"members\"", | 
| 1759 | + | "\"center\"", | 
| 1760 | + | "\"satellites\"", | 
| 1761 |  | "\"position\"", | 
| 1762 |  | "\"orientation\"", | 
| 1763 | + | "\"flucQ\"", | 
| 1764 | + | "\"RNEMD\"", | 
| 1765 | + | "\"minimizer\"", | 
| 1766 |  | "ENDBLOCK", | 
| 1767 |  | "ID", | 
| 1768 |  | "ASSIGNEQUAL", | 
| 1775 |  | "LPAREN", | 
| 1776 |  | "RPAREN", | 
| 1777 |  | "COMMA", | 
| 1778 | < | "OCTALINT", | 
| 1779 | < | "DECIMALINT", | 
| 1780 | < | "HEXADECIMALINT", | 
| 1781 | < | "FLOATONE", | 
| 1439 | < | "FLOATTWO", | 
| 1778 | > | "NUM_INT", | 
| 1779 | > | "NUM_LONG", | 
| 1780 | > | "NUM_FLOAT", | 
| 1781 | > | "NUM_DOUBLE", | 
| 1782 |  | "DOT", | 
| 1783 |  | "COLON", | 
| 1784 |  | "QUESTIONMARK", | 
| 1791 |  | "CharLiteral", | 
| 1792 |  | "EndOfLine", | 
| 1793 |  | "Escape", | 
| 1794 | + | "Vocabulary", | 
| 1795 |  | "Digit", | 
| 1796 |  | "Decimal", | 
| 1797 | < | "LongSuffix", | 
| 1798 | < | "UnsignedSuffix", | 
| 1799 | < | "FloatSuffix", | 
| 1457 | < | "Exponent", | 
| 1458 | < | "Vocabulary", | 
| 1459 | < | "Number", | 
| 1460 | < | "MINUS", | 
| 1797 | > | "HEX_DIGIT", | 
| 1798 | > | "EXPONENT", | 
| 1799 | > | "FLOAT_SUFFIX", | 
| 1800 |  | 0 | 
| 1801 |  | }; | 
| 1802 |  |  | 
| 1803 | < | const unsigned long MDTreeParser::_tokenSet_0_data_[] = { 524400UL, 0UL, 0UL, 0UL }; | 
| 1804 | < | // "component" "molecule" "zconstraint" ASSIGNEQUAL | 
| 1466 | < | const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_0(_tokenSet_0_data_,4); | 
| 1467 | < | const unsigned long MDTreeParser::_tokenSet_1_data_[] = { 540544UL, 0UL, 0UL, 0UL }; | 
| 1468 | < | // "atom" "bond" "bend" "torsion" "rigidBody" "cutoffGroup" "fragment" | 
| 1803 | > | const unsigned long MDTreeParser::_tokenSet_0_data_[] = { 327155952UL, 0UL, 0UL, 0UL }; | 
| 1804 | > | // "component" "molecule" "zconstraint" "restraint" "flucQ" "RNEMD" "minimizer" | 
| 1805 |  | // ASSIGNEQUAL | 
| 1806 | + | const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_0(_tokenSet_0_data_,4); | 
| 1807 | + | const unsigned long MDTreeParser::_tokenSet_1_data_[] = { 268631808UL, 0UL, 0UL, 0UL }; | 
| 1808 | + | // "atom" "bond" "bend" "torsion" "inversion" "rigidBody" "cutoffGroup" | 
| 1809 | + | // "constraint" "fragment" ASSIGNEQUAL | 
| 1810 |  | const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_1(_tokenSet_1_data_,4); | 
| 1811 |  |  | 
| 1812 |  |  |