| 1 | < | /* $ANTLR 2.7.7 (20131114): "MDTreeParser.g" -> "MDTreeParser.cpp"$ */ | 
| 1 | > | /* $ANTLR 2.7.7 (20141024): "MDTreeParser.g" -> "MDTreeParser.cpp"$ */ | 
| 2 |  | #include "MDTreeParser.hpp" | 
| 3 |  | #include <antlr/Token.hpp> | 
| 4 |  | #include <antlr/AST.hpp> | 
| 534 |  | } | 
| 535 |  |  | 
| 536 |  | int  MDTreeParser::intConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 537 | < | #line 312 "MDTreeParser.g" | 
| 537 | > | #line 349 "MDTreeParser.g" | 
| 538 |  | int ival; | 
| 539 |  | #line 540 "MDTreeParser.cpp" | 
| 540 |  | ANTLR_USE_NAMESPACE(antlr)RefAST intConst_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 550 |  | i1 = _t; | 
| 551 |  | match(_t,NUM_INT); | 
| 552 |  | _t = _t->getNextSibling(); | 
| 553 | < | #line 313 "MDTreeParser.g" | 
| 553 | > | #line 350 "MDTreeParser.g" | 
| 554 |  | ival = lexi_cast<int>(i1->getText()); | 
| 555 |  | #line 556 "MDTreeParser.cpp" | 
| 556 |  | break; | 
| 560 |  | i2 = _t; | 
| 561 |  | match(_t,NUM_LONG); | 
| 562 |  | _t = _t->getNextSibling(); | 
| 563 | < | #line 314 "MDTreeParser.g" | 
| 563 | > | #line 351 "MDTreeParser.g" | 
| 564 |  | ival = lexi_cast<int>(i2->getText()); | 
| 565 |  | #line 566 "MDTreeParser.cpp" | 
| 566 |  | break; | 
| 581 |  | } | 
| 582 |  |  | 
| 583 |  | RealType  MDTreeParser::floatConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 584 | < | #line 324 "MDTreeParser.g" | 
| 584 | > | #line 361 "MDTreeParser.g" | 
| 585 |  | RealType dval; | 
| 586 |  | #line 587 "MDTreeParser.cpp" | 
| 587 |  | ANTLR_USE_NAMESPACE(antlr)RefAST floatConst_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 597 |  | d1 = _t; | 
| 598 |  | match(_t,NUM_FLOAT); | 
| 599 |  | _t = _t->getNextSibling(); | 
| 600 | < | #line 325 "MDTreeParser.g" | 
| 600 | > | #line 362 "MDTreeParser.g" | 
| 601 |  | dval = lexi_cast<RealType>(d1->getText()); | 
| 602 |  | #line 603 "MDTreeParser.cpp" | 
| 603 |  | break; | 
| 607 |  | d2 = _t; | 
| 608 |  | match(_t,NUM_DOUBLE); | 
| 609 |  | _t = _t->getNextSibling(); | 
| 610 | < | #line 326 "MDTreeParser.g" | 
| 610 | > | #line 363 "MDTreeParser.g" | 
| 611 |  | dval = lexi_cast<RealType>(d2->getText()); | 
| 612 |  | #line 613 "MDTreeParser.cpp" | 
| 613 |  | break; | 
| 628 |  | } | 
| 629 |  |  | 
| 630 |  | vector<RealType>  MDTreeParser::doubleNumberTuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 631 | < | #line 296 "MDTreeParser.g" | 
| 631 | > | #line 333 "MDTreeParser.g" | 
| 632 |  | vector<RealType> dvec; | 
| 633 |  | #line 634 "MDTreeParser.cpp" | 
| 634 |  | ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumberTuple_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 635 | < | #line 296 "MDTreeParser.g" | 
| 635 | > | #line 333 "MDTreeParser.g" | 
| 636 |  |  | 
| 637 |  | RealType dval; | 
| 638 |  |  | 
| 640 |  |  | 
| 641 |  | try {      // for error handling | 
| 642 |  | { // ( ... )+ | 
| 643 | < | int _cnt95=0; | 
| 643 | > | int _cnt122=0; | 
| 644 |  | for (;;) { | 
| 645 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 646 |  | _t = ASTNULL; | 
| 647 |  | if (((_t->getType() >= NUM_INT && _t->getType() <= NUM_DOUBLE))) { | 
| 648 |  | dval=doubleNumber(_t); | 
| 649 |  | _t = _retTree; | 
| 650 | < | #line 300 "MDTreeParser.g" | 
| 650 | > | #line 337 "MDTreeParser.g" | 
| 651 |  | dvec.push_back(dval); | 
| 652 |  | #line 653 "MDTreeParser.cpp" | 
| 653 |  | } | 
| 654 |  | else { | 
| 655 | < | if ( _cnt95>=1 ) { goto _loop95; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} | 
| 655 | > | if ( _cnt122>=1 ) { goto _loop122; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} | 
| 656 |  | } | 
| 657 |  |  | 
| 658 | < | _cnt95++; | 
| 658 | > | _cnt122++; | 
| 659 |  | } | 
| 660 | < | _loop95:; | 
| 660 | > | _loop122:; | 
| 661 |  | }  // ( ... )+ | 
| 662 |  | } | 
| 663 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 772 |  | for (;;) { | 
| 773 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 774 |  | _t = ASTNULL; | 
| 775 | < | if ((_t->getType() == POSITION || _t->getType() == ORIENTATION || _t->getType() == ASSIGNEQUAL)) { | 
| 775 | > | if ((_tokenSet_2.member(_t->getType()))) { | 
| 776 |  | atomstatement(_t); | 
| 777 |  | _t = _retTree; | 
| 778 |  | } | 
| 809 |  | ANTLR_USE_NAMESPACE(antlr)RefAST bondblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 810 |  |  | 
| 811 |  | try {      // for error handling | 
| 812 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t46 = _t; | 
| 812 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t47 = _t; | 
| 813 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp20_AST_in = _t; | 
| 814 |  | match(_t,BOND); | 
| 815 |  | _t = _t->getFirstChild(); | 
| 816 | < | #line 144 "MDTreeParser.g" | 
| 816 | > | #line 147 "MDTreeParser.g" | 
| 817 |  | BondStamp* currBondStamp = new BondStamp(); blockStack.push(currBondStamp); | 
| 818 |  | #line 819 "MDTreeParser.cpp" | 
| 819 |  | { // ( ... )* | 
| 820 |  | for (;;) { | 
| 821 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 822 |  | _t = ASTNULL; | 
| 823 | < | if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { | 
| 823 | > | if ((_tokenSet_3.member(_t->getType()))) { | 
| 824 |  | bondstatement(_t); | 
| 825 |  | _t = _retTree; | 
| 826 |  | } | 
| 827 |  | else { | 
| 828 | < | goto _loop48; | 
| 828 | > | goto _loop49; | 
| 829 |  | } | 
| 830 |  |  | 
| 831 |  | } | 
| 832 | < | _loop48:; | 
| 832 | > | _loop49:; | 
| 833 |  | } // ( ... )* | 
| 834 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp21_AST_in = _t; | 
| 835 |  | match(_t,ENDBLOCK); | 
| 836 |  | _t = _t->getNextSibling(); | 
| 837 | < | _t = __t46; | 
| 837 | > | _t = __t47; | 
| 838 |  | _t = _t->getNextSibling(); | 
| 839 | < | #line 146 "MDTreeParser.g" | 
| 839 | > | #line 149 "MDTreeParser.g" | 
| 840 |  |  | 
| 841 | + | blockStack.top()->validate(); | 
| 842 |  | blockStack.pop(); | 
| 843 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 844 |  | currMoleculeStamp->addBondStamp(currBondStamp); | 
| 845 |  |  | 
| 846 | < | #line 846 "MDTreeParser.cpp" | 
| 846 | > | #line 847 "MDTreeParser.cpp" | 
| 847 |  | } | 
| 848 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 849 |  | reportError(ex); | 
| 857 |  | ANTLR_USE_NAMESPACE(antlr)RefAST bendblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 858 |  |  | 
| 859 |  | try {      // for error handling | 
| 860 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t52 = _t; | 
| 860 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t59 = _t; | 
| 861 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp22_AST_in = _t; | 
| 862 |  | match(_t,BEND); | 
| 863 |  | _t = _t->getFirstChild(); | 
| 864 | < | #line 162 "MDTreeParser.g" | 
| 864 | > | #line 174 "MDTreeParser.g" | 
| 865 |  | BendStamp* currBendStamp = new BendStamp(); blockStack.push(currBendStamp); | 
| 866 | < | #line 866 "MDTreeParser.cpp" | 
| 866 | > | #line 867 "MDTreeParser.cpp" | 
| 867 |  | { // ( ... )* | 
| 868 |  | for (;;) { | 
| 869 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 870 |  | _t = ASTNULL; | 
| 871 | < | if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { | 
| 871 | > | if ((_tokenSet_4.member(_t->getType()))) { | 
| 872 |  | bendstatement(_t); | 
| 873 |  | _t = _retTree; | 
| 874 |  | } | 
| 875 |  | else { | 
| 876 | < | goto _loop54; | 
| 876 | > | goto _loop61; | 
| 877 |  | } | 
| 878 |  |  | 
| 879 |  | } | 
| 880 | < | _loop54:; | 
| 880 | > | _loop61:; | 
| 881 |  | } // ( ... )* | 
| 882 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp23_AST_in = _t; | 
| 883 |  | match(_t,ENDBLOCK); | 
| 884 |  | _t = _t->getNextSibling(); | 
| 885 | < | _t = __t52; | 
| 885 | > | _t = __t59; | 
| 886 |  | _t = _t->getNextSibling(); | 
| 887 | < | #line 164 "MDTreeParser.g" | 
| 887 | > | #line 176 "MDTreeParser.g" | 
| 888 |  |  | 
| 889 |  | blockStack.top()->validate(); | 
| 890 |  | blockStack.pop(); | 
| 891 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 892 |  | currMoleculeStamp->addBendStamp(currBendStamp); | 
| 893 |  |  | 
| 894 | < | #line 894 "MDTreeParser.cpp" | 
| 894 | > | #line 895 "MDTreeParser.cpp" | 
| 895 |  | } | 
| 896 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 897 |  | reportError(ex); | 
| 905 |  | ANTLR_USE_NAMESPACE(antlr)RefAST torsionblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 906 |  |  | 
| 907 |  | try {      // for error handling | 
| 908 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t58 = _t; | 
| 908 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t72 = _t; | 
| 909 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp24_AST_in = _t; | 
| 910 |  | match(_t,TORSION); | 
| 911 |  | _t = _t->getFirstChild(); | 
| 912 | < | #line 181 "MDTreeParser.g" | 
| 912 | > | #line 201 "MDTreeParser.g" | 
| 913 |  | TorsionStamp* currTorsionStamp = new TorsionStamp(); blockStack.push(currTorsionStamp); | 
| 914 | < | #line 914 "MDTreeParser.cpp" | 
| 914 | > | #line 915 "MDTreeParser.cpp" | 
| 915 |  | { // ( ... )* | 
| 916 |  | for (;;) { | 
| 917 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 918 |  | _t = ASTNULL; | 
| 919 | < | if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { | 
| 919 | > | if ((_tokenSet_5.member(_t->getType()))) { | 
| 920 |  | torsionstatement(_t); | 
| 921 |  | _t = _retTree; | 
| 922 |  | } | 
| 923 |  | else { | 
| 924 | < | goto _loop60; | 
| 924 | > | goto _loop74; | 
| 925 |  | } | 
| 926 |  |  | 
| 927 |  | } | 
| 928 | < | _loop60:; | 
| 928 | > | _loop74:; | 
| 929 |  | } // ( ... )* | 
| 930 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp25_AST_in = _t; | 
| 931 |  | match(_t,ENDBLOCK); | 
| 932 |  | _t = _t->getNextSibling(); | 
| 933 | < | _t = __t58; | 
| 933 | > | _t = __t72; | 
| 934 |  | _t = _t->getNextSibling(); | 
| 935 | < | #line 183 "MDTreeParser.g" | 
| 935 | > | #line 203 "MDTreeParser.g" | 
| 936 |  |  | 
| 937 |  | blockStack.top()->validate(); | 
| 938 |  | blockStack.pop(); | 
| 939 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 940 |  | currMoleculeStamp->addTorsionStamp(currTorsionStamp); | 
| 941 |  |  | 
| 942 | < | #line 942 "MDTreeParser.cpp" | 
| 942 | > | #line 943 "MDTreeParser.cpp" | 
| 943 |  | } | 
| 944 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 945 |  | reportError(ex); | 
| 953 |  | ANTLR_USE_NAMESPACE(antlr)RefAST inversionblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 954 |  |  | 
| 955 |  | try {      // for error handling | 
| 956 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t64 = _t; | 
| 956 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t86 = _t; | 
| 957 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp26_AST_in = _t; | 
| 958 |  | match(_t,INVERSION); | 
| 959 |  | _t = _t->getFirstChild(); | 
| 960 | < | #line 200 "MDTreeParser.g" | 
| 960 | > | #line 230 "MDTreeParser.g" | 
| 961 |  | InversionStamp* currInversionStamp = new InversionStamp(); blockStack.push(currInversionStamp); | 
| 962 | < | #line 962 "MDTreeParser.cpp" | 
| 962 | > | #line 963 "MDTreeParser.cpp" | 
| 963 |  | { // ( ... )* | 
| 964 |  | for (;;) { | 
| 965 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 966 |  | _t = ASTNULL; | 
| 967 | < | if ((_t->getType() == CENTER || _t->getType() == SATELLITES || _t->getType() == ASSIGNEQUAL)) { | 
| 967 | > | if ((_tokenSet_6.member(_t->getType()))) { | 
| 968 |  | inversionstatement(_t); | 
| 969 |  | _t = _retTree; | 
| 970 |  | } | 
| 971 |  | else { | 
| 972 | < | goto _loop66; | 
| 972 | > | goto _loop88; | 
| 973 |  | } | 
| 974 |  |  | 
| 975 |  | } | 
| 976 | < | _loop66:; | 
| 976 | > | _loop88:; | 
| 977 |  | } // ( ... )* | 
| 978 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp27_AST_in = _t; | 
| 979 |  | match(_t,ENDBLOCK); | 
| 980 |  | _t = _t->getNextSibling(); | 
| 981 | < | _t = __t64; | 
| 981 | > | _t = __t86; | 
| 982 |  | _t = _t->getNextSibling(); | 
| 983 | < | #line 202 "MDTreeParser.g" | 
| 983 | > | #line 232 "MDTreeParser.g" | 
| 984 |  |  | 
| 985 |  | blockStack.top()->validate(); | 
| 986 |  | blockStack.pop(); | 
| 987 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 988 |  | currMoleculeStamp->addInversionStamp(currInversionStamp); | 
| 989 |  |  | 
| 990 | < | #line 990 "MDTreeParser.cpp" | 
| 990 | > | #line 991 "MDTreeParser.cpp" | 
| 991 |  | } | 
| 992 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 993 |  | reportError(ex); | 
| 999 |  |  | 
| 1000 |  | void MDTreeParser::rigidbodyblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1001 |  | ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodyblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1002 | < | #line 221 "MDTreeParser.g" | 
| 1002 | > | #line 258 "MDTreeParser.g" | 
| 1003 |  |  | 
| 1004 |  | int index; | 
| 1005 |  |  | 
| 1006 | < | #line 1006 "MDTreeParser.cpp" | 
| 1006 | > | #line 1007 "MDTreeParser.cpp" | 
| 1007 |  |  | 
| 1008 |  | try {      // for error handling | 
| 1009 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t71 = _t; | 
| 1009 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t98 = _t; | 
| 1010 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp28_AST_in = _t; | 
| 1011 |  | match(_t,RIGIDBODY); | 
| 1012 |  | _t = _t->getFirstChild(); | 
| 1013 |  | index=intConst(_t); | 
| 1014 |  | _t = _retTree; | 
| 1015 | < | #line 225 "MDTreeParser.g" | 
| 1015 | > | #line 262 "MDTreeParser.g" | 
| 1016 |  | RigidBodyStamp* currRigidBodyStamp = new RigidBodyStamp(index); blockStack.push(currRigidBodyStamp); | 
| 1017 | < | #line 1017 "MDTreeParser.cpp" | 
| 1017 | > | #line 1018 "MDTreeParser.cpp" | 
| 1018 |  | { // ( ... )* | 
| 1019 |  | for (;;) { | 
| 1020 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1024 |  | _t = _retTree; | 
| 1025 |  | } | 
| 1026 |  | else { | 
| 1027 | < | goto _loop73; | 
| 1027 | > | goto _loop100; | 
| 1028 |  | } | 
| 1029 |  |  | 
| 1030 |  | } | 
| 1031 | < | _loop73:; | 
| 1031 | > | _loop100:; | 
| 1032 |  | } // ( ... )* | 
| 1033 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp29_AST_in = _t; | 
| 1034 |  | match(_t,ENDBLOCK); | 
| 1035 |  | _t = _t->getNextSibling(); | 
| 1036 | < | _t = __t71; | 
| 1036 | > | _t = __t98; | 
| 1037 |  | _t = _t->getNextSibling(); | 
| 1038 | < | #line 227 "MDTreeParser.g" | 
| 1038 | > | #line 264 "MDTreeParser.g" | 
| 1039 |  |  | 
| 1040 |  | blockStack.top()->validate(); | 
| 1041 |  | blockStack.pop(); | 
| 1042 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1043 |  | currMoleculeStamp->addRigidBodyStamp(currRigidBodyStamp); | 
| 1044 |  |  | 
| 1045 | < | #line 1045 "MDTreeParser.cpp" | 
| 1045 | > | #line 1046 "MDTreeParser.cpp" | 
| 1046 |  | } | 
| 1047 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1048 |  | reportError(ex); | 
| 1056 |  | ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1057 |  |  | 
| 1058 |  | try {      // for error handling | 
| 1059 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t77 = _t; | 
| 1059 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t104 = _t; | 
| 1060 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp30_AST_in = _t; | 
| 1061 |  | match(_t,CUTOFFGROUP); | 
| 1062 |  | _t = _t->getFirstChild(); | 
| 1063 | < | #line 244 "MDTreeParser.g" | 
| 1063 | > | #line 281 "MDTreeParser.g" | 
| 1064 |  | CutoffGroupStamp* currCutoffGroupStamp = new CutoffGroupStamp(); blockStack.push(currCutoffGroupStamp); | 
| 1065 | < | #line 1065 "MDTreeParser.cpp" | 
| 1065 | > | #line 1066 "MDTreeParser.cpp" | 
| 1066 |  | { // ( ... )* | 
| 1067 |  | for (;;) { | 
| 1068 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1072 |  | _t = _retTree; | 
| 1073 |  | } | 
| 1074 |  | else { | 
| 1075 | < | goto _loop79; | 
| 1075 | > | goto _loop106; | 
| 1076 |  | } | 
| 1077 |  |  | 
| 1078 |  | } | 
| 1079 | < | _loop79:; | 
| 1079 | > | _loop106:; | 
| 1080 |  | } // ( ... )* | 
| 1081 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp31_AST_in = _t; | 
| 1082 |  | match(_t,ENDBLOCK); | 
| 1083 |  | _t = _t->getNextSibling(); | 
| 1084 | < | _t = __t77; | 
| 1084 | > | _t = __t104; | 
| 1085 |  | _t = _t->getNextSibling(); | 
| 1086 | < | #line 246 "MDTreeParser.g" | 
| 1086 | > | #line 283 "MDTreeParser.g" | 
| 1087 |  |  | 
| 1088 |  | blockStack.top()->validate(); | 
| 1089 |  | blockStack.pop(); | 
| 1090 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1091 |  | currMoleculeStamp->addCutoffGroupStamp(currCutoffGroupStamp); | 
| 1092 |  |  | 
| 1093 | < | #line 1093 "MDTreeParser.cpp" | 
| 1093 | > | #line 1094 "MDTreeParser.cpp" | 
| 1094 |  | } | 
| 1095 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1096 |  | reportError(ex); | 
| 1102 |  |  | 
| 1103 |  | void MDTreeParser::fragmentblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1104 |  | ANTLR_USE_NAMESPACE(antlr)RefAST fragmentblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1105 | < | #line 263 "MDTreeParser.g" | 
| 1105 | > | #line 300 "MDTreeParser.g" | 
| 1106 |  | int ival; | 
| 1107 | < | #line 1107 "MDTreeParser.cpp" | 
| 1107 | > | #line 1108 "MDTreeParser.cpp" | 
| 1108 |  |  | 
| 1109 |  | try {      // for error handling | 
| 1110 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t83 = _t; | 
| 1110 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t110 = _t; | 
| 1111 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp32_AST_in = _t; | 
| 1112 |  | match(_t,FRAGMENT); | 
| 1113 |  | _t = _t->getFirstChild(); | 
| 1114 |  | ival=intConst(_t); | 
| 1115 |  | _t = _retTree; | 
| 1116 | < | #line 264 "MDTreeParser.g" | 
| 1116 | > | #line 301 "MDTreeParser.g" | 
| 1117 |  | FragmentStamp* currFragmentStamp = new FragmentStamp(ival); blockStack.push(currFragmentStamp); | 
| 1118 | < | #line 1118 "MDTreeParser.cpp" | 
| 1118 | > | #line 1119 "MDTreeParser.cpp" | 
| 1119 |  | { // ( ... )* | 
| 1120 |  | for (;;) { | 
| 1121 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1125 |  | _t = _retTree; | 
| 1126 |  | } | 
| 1127 |  | else { | 
| 1128 | < | goto _loop85; | 
| 1128 | > | goto _loop112; | 
| 1129 |  | } | 
| 1130 |  |  | 
| 1131 |  | } | 
| 1132 | < | _loop85:; | 
| 1132 | > | _loop112:; | 
| 1133 |  | } // ( ... )* | 
| 1134 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp33_AST_in = _t; | 
| 1135 |  | match(_t,ENDBLOCK); | 
| 1136 |  | _t = _t->getNextSibling(); | 
| 1137 | < | _t = __t83; | 
| 1137 | > | _t = __t110; | 
| 1138 |  | _t = _t->getNextSibling(); | 
| 1139 | < | #line 266 "MDTreeParser.g" | 
| 1139 | > | #line 303 "MDTreeParser.g" | 
| 1140 |  |  | 
| 1141 |  | blockStack.top()->validate(); | 
| 1142 |  | blockStack.pop(); | 
| 1143 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1144 |  | currMoleculeStamp->addFragmentStamp(currFragmentStamp); | 
| 1145 |  |  | 
| 1146 | < | #line 1146 "MDTreeParser.cpp" | 
| 1146 | > | #line 1147 "MDTreeParser.cpp" | 
| 1147 |  | } | 
| 1148 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1149 |  | reportError(ex); | 
| 1157 |  | ANTLR_USE_NAMESPACE(antlr)RefAST constraintblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1158 |  |  | 
| 1159 |  | try {      // for error handling | 
| 1160 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t88 = _t; | 
| 1160 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t115 = _t; | 
| 1161 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp34_AST_in = _t; | 
| 1162 |  | match(_t,CONSTRAINT); | 
| 1163 |  | _t = _t->getFirstChild(); | 
| 1164 | < | #line 277 "MDTreeParser.g" | 
| 1164 | > | #line 314 "MDTreeParser.g" | 
| 1165 |  | ConstraintStamp* currConstraintStamp = new ConstraintStamp(); blockStack.push(currConstraintStamp); | 
| 1166 | < | #line 1166 "MDTreeParser.cpp" | 
| 1166 | > | #line 1167 "MDTreeParser.cpp" | 
| 1167 |  | { // ( ... )* | 
| 1168 |  | for (;;) { | 
| 1169 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1173 |  | _t = _retTree; | 
| 1174 |  | } | 
| 1175 |  | else { | 
| 1176 | < | goto _loop90; | 
| 1176 | > | goto _loop117; | 
| 1177 |  | } | 
| 1178 |  |  | 
| 1179 |  | } | 
| 1180 | < | _loop90:; | 
| 1180 | > | _loop117:; | 
| 1181 |  | } // ( ... )* | 
| 1182 |  | ANTLR_USE_NAMESPACE(antlr)RefAST tmp35_AST_in = _t; | 
| 1183 |  | match(_t,ENDBLOCK); | 
| 1184 |  | _t = _t->getNextSibling(); | 
| 1185 | < | _t = __t88; | 
| 1185 | > | _t = __t115; | 
| 1186 |  | _t = _t->getNextSibling(); | 
| 1187 | < | #line 279 "MDTreeParser.g" | 
| 1187 | > | #line 316 "MDTreeParser.g" | 
| 1188 |  |  | 
| 1189 |  | blockStack.pop(); | 
| 1190 |  | MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); | 
| 1191 |  | currMoleculeStamp->addConstraintStamp(currConstraintStamp); | 
| 1192 |  |  | 
| 1193 | < | #line 1193 "MDTreeParser.cpp" | 
| 1193 | > | #line 1194 "MDTreeParser.cpp" | 
| 1194 |  | } | 
| 1195 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1196 |  | reportError(ex); | 
| 1205 |  | #line 132 "MDTreeParser.g" | 
| 1206 |  |  | 
| 1207 |  | vector<RealType> dvec; | 
| 1208 | + | RealType rval; | 
| 1209 |  | AtomStamp* currAtomStamp =  static_cast<AtomStamp*>(blockStack.top()); | 
| 1210 |  |  | 
| 1211 |  |  | 
| 1212 | < | #line 1211 "MDTreeParser.cpp" | 
| 1212 | > | #line 1213 "MDTreeParser.cpp" | 
| 1213 |  |  | 
| 1214 |  | try {      // for error handling | 
| 1215 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1231 |  | _t = _retTree; | 
| 1232 |  | _t = __t43; | 
| 1233 |  | _t = _t->getNextSibling(); | 
| 1234 | < | #line 139 "MDTreeParser.g" | 
| 1234 | > | #line 140 "MDTreeParser.g" | 
| 1235 |  | currAtomStamp->setPosition(dvec); | 
| 1236 | < | #line 1235 "MDTreeParser.cpp" | 
| 1236 | > | #line 1237 "MDTreeParser.cpp" | 
| 1237 |  | break; | 
| 1238 |  | } | 
| 1239 |  | case ORIENTATION: | 
| 1246 |  | _t = _retTree; | 
| 1247 |  | _t = __t44; | 
| 1248 |  | _t = _t->getNextSibling(); | 
| 1249 | < | #line 140 "MDTreeParser.g" | 
| 1249 | > | #line 141 "MDTreeParser.g" | 
| 1250 |  | currAtomStamp->setOrientation(dvec); | 
| 1251 | < | #line 1250 "MDTreeParser.cpp" | 
| 1251 | > | #line 1252 "MDTreeParser.cpp" | 
| 1252 | > | break; | 
| 1253 | > | } | 
| 1254 | > | case CHARGE: | 
| 1255 | > | { | 
| 1256 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t45 = _t; | 
| 1257 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp38_AST_in = _t; | 
| 1258 | > | match(_t,CHARGE); | 
| 1259 | > | _t = _t->getFirstChild(); | 
| 1260 | > | rval=doubleNumber(_t); | 
| 1261 | > | _t = _retTree; | 
| 1262 | > | _t = __t45; | 
| 1263 | > | _t = _t->getNextSibling(); | 
| 1264 | > | #line 142 "MDTreeParser.g" | 
| 1265 | > | currAtomStamp->overrideCharge(rval); | 
| 1266 | > | #line 1267 "MDTreeParser.cpp" | 
| 1267 | > | break; | 
| 1268 | > | } | 
| 1269 | > | default: | 
| 1270 | > | { | 
| 1271 | > | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1272 | > | } | 
| 1273 | > | } | 
| 1274 | > | } | 
| 1275 | > | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1276 | > | reportError(ex); | 
| 1277 | > | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1278 | > | _t = _t->getNextSibling(); | 
| 1279 | > | } | 
| 1280 | > | _retTree = _t; | 
| 1281 | > | } | 
| 1282 | > |  | 
| 1283 | > | RealType  MDTreeParser::doubleNumber(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1284 | > | #line 355 "MDTreeParser.g" | 
| 1285 | > | RealType dval; | 
| 1286 | > | #line 1287 "MDTreeParser.cpp" | 
| 1287 | > | ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumber_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1288 | > | ANTLR_USE_NAMESPACE(antlr)RefAST ic = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 1289 | > | ANTLR_USE_NAMESPACE(antlr)RefAST fc = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 1290 | > |  | 
| 1291 | > | try {      // for error handling | 
| 1292 | > | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1293 | > | _t = ASTNULL; | 
| 1294 | > | switch ( _t->getType()) { | 
| 1295 | > | case NUM_INT: | 
| 1296 | > | case NUM_LONG: | 
| 1297 | > | { | 
| 1298 | > | ic = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1299 | > | intConst(_t); | 
| 1300 | > | _t = _retTree; | 
| 1301 | > | #line 356 "MDTreeParser.g" | 
| 1302 | > | dval = lexi_cast<RealType>(ic->getText()); | 
| 1303 | > | #line 1304 "MDTreeParser.cpp" | 
| 1304 |  | break; | 
| 1305 |  | } | 
| 1306 | + | case NUM_FLOAT: | 
| 1307 | + | case NUM_DOUBLE: | 
| 1308 | + | { | 
| 1309 | + | fc = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1310 | + | floatConst(_t); | 
| 1311 | + | _t = _retTree; | 
| 1312 | + | #line 357 "MDTreeParser.g" | 
| 1313 | + | dval = lexi_cast<RealType>(fc->getText()); | 
| 1314 | + | #line 1315 "MDTreeParser.cpp" | 
| 1315 | + | break; | 
| 1316 | + | } | 
| 1317 |  | default: | 
| 1318 |  | { | 
| 1319 |  | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1326 |  | _t = _t->getNextSibling(); | 
| 1327 |  | } | 
| 1328 |  | _retTree = _t; | 
| 1329 | + | return dval; | 
| 1330 |  | } | 
| 1331 |  |  | 
| 1332 |  | void MDTreeParser::bondstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1333 |  | ANTLR_USE_NAMESPACE(antlr)RefAST bondstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1334 | < | #line 153 "MDTreeParser.g" | 
| 1334 | > | #line 157 "MDTreeParser.g" | 
| 1335 |  |  | 
| 1336 |  | vector<int> ivec; | 
| 1337 | + | RealType rval; | 
| 1338 | + | vector<RealType> dvec; | 
| 1339 |  | BondStamp* currBondStamp = static_cast<BondStamp*>(blockStack.top()); | 
| 1340 |  |  | 
| 1341 | < | #line 1274 "MDTreeParser.cpp" | 
| 1341 | > | #line 1342 "MDTreeParser.cpp" | 
| 1342 |  |  | 
| 1343 |  | try {      // for error handling | 
| 1344 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1352 |  | } | 
| 1353 |  | case MEMBERS: | 
| 1354 |  | { | 
| 1355 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t50 = _t; | 
| 1356 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp38_AST_in = _t; | 
| 1355 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t51 = _t; | 
| 1356 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp39_AST_in = _t; | 
| 1357 |  | match(_t,MEMBERS); | 
| 1358 |  | _t = _t->getFirstChild(); | 
| 1359 |  | ivec=inttuple(_t); | 
| 1360 |  | _t = _retTree; | 
| 1361 | < | _t = __t50; | 
| 1361 | > | _t = __t51; | 
| 1362 |  | _t = _t->getNextSibling(); | 
| 1363 | < | #line 159 "MDTreeParser.g" | 
| 1363 | > | #line 165 "MDTreeParser.g" | 
| 1364 |  | currBondStamp->setMembers(ivec); | 
| 1365 | < | #line 1298 "MDTreeParser.cpp" | 
| 1365 | > | #line 1366 "MDTreeParser.cpp" | 
| 1366 |  | break; | 
| 1367 |  | } | 
| 1368 | + | case FIXED: | 
| 1369 | + | { | 
| 1370 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t52 = _t; | 
| 1371 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp40_AST_in = _t; | 
| 1372 | + | match(_t,FIXED); | 
| 1373 | + | _t = _t->getFirstChild(); | 
| 1374 | + | rval=doubleNumber(_t); | 
| 1375 | + | _t = _retTree; | 
| 1376 | + | _t = __t52; | 
| 1377 | + | _t = _t->getNextSibling(); | 
| 1378 | + | #line 166 "MDTreeParser.g" | 
| 1379 | + | currBondStamp->overrideType("Fixed", rval); | 
| 1380 | + | #line 1381 "MDTreeParser.cpp" | 
| 1381 | + | break; | 
| 1382 | + | } | 
| 1383 | + | case HARMONIC: | 
| 1384 | + | { | 
| 1385 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t53 = _t; | 
| 1386 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp41_AST_in = _t; | 
| 1387 | + | match(_t,HARMONIC); | 
| 1388 | + | _t = _t->getFirstChild(); | 
| 1389 | + | dvec=doubleNumberTuple(_t); | 
| 1390 | + | _t = _retTree; | 
| 1391 | + | _t = __t53; | 
| 1392 | + | _t = _t->getNextSibling(); | 
| 1393 | + | #line 167 "MDTreeParser.g" | 
| 1394 | + | currBondStamp->overrideType("Harmonic", dvec); | 
| 1395 | + | #line 1396 "MDTreeParser.cpp" | 
| 1396 | + | break; | 
| 1397 | + | } | 
| 1398 | + | case CUBIC: | 
| 1399 | + | { | 
| 1400 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t54 = _t; | 
| 1401 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp42_AST_in = _t; | 
| 1402 | + | match(_t,CUBIC); | 
| 1403 | + | _t = _t->getFirstChild(); | 
| 1404 | + | dvec=doubleNumberTuple(_t); | 
| 1405 | + | _t = _retTree; | 
| 1406 | + | _t = __t54; | 
| 1407 | + | _t = _t->getNextSibling(); | 
| 1408 | + | #line 168 "MDTreeParser.g" | 
| 1409 | + | currBondStamp->overrideType("Cubic", dvec); | 
| 1410 | + | #line 1411 "MDTreeParser.cpp" | 
| 1411 | + | break; | 
| 1412 | + | } | 
| 1413 | + | case QUARTIC: | 
| 1414 | + | { | 
| 1415 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t55 = _t; | 
| 1416 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp43_AST_in = _t; | 
| 1417 | + | match(_t,QUARTIC); | 
| 1418 | + | _t = _t->getFirstChild(); | 
| 1419 | + | dvec=doubleNumberTuple(_t); | 
| 1420 | + | _t = _retTree; | 
| 1421 | + | _t = __t55; | 
| 1422 | + | _t = _t->getNextSibling(); | 
| 1423 | + | #line 169 "MDTreeParser.g" | 
| 1424 | + | currBondStamp->overrideType("Quartic", dvec); | 
| 1425 | + | #line 1426 "MDTreeParser.cpp" | 
| 1426 | + | break; | 
| 1427 | + | } | 
| 1428 | + | case POLYNOMIAL: | 
| 1429 | + | { | 
| 1430 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t56 = _t; | 
| 1431 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp44_AST_in = _t; | 
| 1432 | + | match(_t,POLYNOMIAL); | 
| 1433 | + | _t = _t->getFirstChild(); | 
| 1434 | + | dvec=doubleNumberTuple(_t); | 
| 1435 | + | _t = _retTree; | 
| 1436 | + | _t = __t56; | 
| 1437 | + | _t = _t->getNextSibling(); | 
| 1438 | + | #line 170 "MDTreeParser.g" | 
| 1439 | + | currBondStamp->overrideType("Polynomial", dvec); | 
| 1440 | + | #line 1441 "MDTreeParser.cpp" | 
| 1441 | + | break; | 
| 1442 | + | } | 
| 1443 | + | case MORSE: | 
| 1444 | + | { | 
| 1445 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t57 = _t; | 
| 1446 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp45_AST_in = _t; | 
| 1447 | + | match(_t,MORSE); | 
| 1448 | + | _t = _t->getFirstChild(); | 
| 1449 | + | dvec=doubleNumberTuple(_t); | 
| 1450 | + | _t = _retTree; | 
| 1451 | + | _t = __t57; | 
| 1452 | + | _t = _t->getNextSibling(); | 
| 1453 | + | #line 171 "MDTreeParser.g" | 
| 1454 | + | currBondStamp->overrideType("Morse", dvec); | 
| 1455 | + | #line 1456 "MDTreeParser.cpp" | 
| 1456 | + | break; | 
| 1457 | + | } | 
| 1458 |  | default: | 
| 1459 |  | { | 
| 1460 |  | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1470 |  | } | 
| 1471 |  |  | 
| 1472 |  | vector<int>  MDTreeParser::inttuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1473 | < | #line 304 "MDTreeParser.g" | 
| 1473 | > | #line 341 "MDTreeParser.g" | 
| 1474 |  | vector<int> ivec; | 
| 1475 | < | #line 1318 "MDTreeParser.cpp" | 
| 1475 | > | #line 1476 "MDTreeParser.cpp" | 
| 1476 |  | ANTLR_USE_NAMESPACE(antlr)RefAST inttuple_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1477 | < | #line 304 "MDTreeParser.g" | 
| 1477 | > | #line 341 "MDTreeParser.g" | 
| 1478 |  |  | 
| 1479 |  | int ival; | 
| 1480 |  |  | 
| 1481 | < | #line 1324 "MDTreeParser.cpp" | 
| 1481 | > | #line 1482 "MDTreeParser.cpp" | 
| 1482 |  |  | 
| 1483 |  | try {      // for error handling | 
| 1484 |  | { // ( ... )+ | 
| 1485 | < | int _cnt98=0; | 
| 1485 | > | int _cnt125=0; | 
| 1486 |  | for (;;) { | 
| 1487 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1488 |  | _t = ASTNULL; | 
| 1489 |  | if ((_t->getType() == NUM_INT || _t->getType() == NUM_LONG)) { | 
| 1490 |  | ival=intConst(_t); | 
| 1491 |  | _t = _retTree; | 
| 1492 | < | #line 308 "MDTreeParser.g" | 
| 1492 | > | #line 345 "MDTreeParser.g" | 
| 1493 |  | ivec.push_back(ival); | 
| 1494 | < | #line 1337 "MDTreeParser.cpp" | 
| 1494 | > | #line 1495 "MDTreeParser.cpp" | 
| 1495 |  | } | 
| 1496 |  | else { | 
| 1497 | < | if ( _cnt98>=1 ) { goto _loop98; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} | 
| 1497 | > | if ( _cnt125>=1 ) { goto _loop125; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} | 
| 1498 |  | } | 
| 1499 |  |  | 
| 1500 | < | _cnt98++; | 
| 1500 | > | _cnt125++; | 
| 1501 |  | } | 
| 1502 | < | _loop98:; | 
| 1502 | > | _loop125:; | 
| 1503 |  | }  // ( ... )+ | 
| 1504 |  | } | 
| 1505 |  | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1513 |  |  | 
| 1514 |  | void MDTreeParser::bendstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1515 |  | ANTLR_USE_NAMESPACE(antlr)RefAST bendstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1516 | < | #line 172 "MDTreeParser.g" | 
| 1516 | > | #line 184 "MDTreeParser.g" | 
| 1517 |  |  | 
| 1518 |  | vector<int> ivec; | 
| 1519 | + | vector<RealType> dvec; | 
| 1520 |  | BendStamp* currBendStamp = static_cast<BendStamp*>(blockStack.top()); | 
| 1521 |  |  | 
| 1522 | < | #line 1364 "MDTreeParser.cpp" | 
| 1522 | > | #line 1523 "MDTreeParser.cpp" | 
| 1523 |  |  | 
| 1524 |  | try {      // for error handling | 
| 1525 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1533 |  | } | 
| 1534 |  | case MEMBERS: | 
| 1535 |  | { | 
| 1536 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t56 = _t; | 
| 1537 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp39_AST_in = _t; | 
| 1536 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t63 = _t; | 
| 1537 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp46_AST_in = _t; | 
| 1538 |  | match(_t,MEMBERS); | 
| 1539 |  | _t = _t->getFirstChild(); | 
| 1540 |  | ivec=inttuple(_t); | 
| 1541 |  | _t = _retTree; | 
| 1542 | < | _t = __t56; | 
| 1542 | > | _t = __t63; | 
| 1543 |  | _t = _t->getNextSibling(); | 
| 1544 | < | #line 178 "MDTreeParser.g" | 
| 1544 | > | #line 191 "MDTreeParser.g" | 
| 1545 |  | currBendStamp->setMembers(ivec); | 
| 1546 | < | #line 1388 "MDTreeParser.cpp" | 
| 1546 | > | #line 1547 "MDTreeParser.cpp" | 
| 1547 |  | break; | 
| 1548 |  | } | 
| 1549 | + | case HARMONIC: | 
| 1550 | + | { | 
| 1551 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t64 = _t; | 
| 1552 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp47_AST_in = _t; | 
| 1553 | + | match(_t,HARMONIC); | 
| 1554 | + | _t = _t->getFirstChild(); | 
| 1555 | + | dvec=doubleNumberTuple(_t); | 
| 1556 | + | _t = _retTree; | 
| 1557 | + | _t = __t64; | 
| 1558 | + | _t = _t->getNextSibling(); | 
| 1559 | + | #line 192 "MDTreeParser.g" | 
| 1560 | + | currBendStamp->overrideType("Harmonic", dvec); | 
| 1561 | + | #line 1562 "MDTreeParser.cpp" | 
| 1562 | + | break; | 
| 1563 | + | } | 
| 1564 | + | case GHOSTBEND: | 
| 1565 | + | { | 
| 1566 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t65 = _t; | 
| 1567 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp48_AST_in = _t; | 
| 1568 | + | match(_t,GHOSTBEND); | 
| 1569 | + | _t = _t->getFirstChild(); | 
| 1570 | + | dvec=doubleNumberTuple(_t); | 
| 1571 | + | _t = _retTree; | 
| 1572 | + | _t = __t65; | 
| 1573 | + | _t = _t->getNextSibling(); | 
| 1574 | + | #line 193 "MDTreeParser.g" | 
| 1575 | + | currBendStamp->overrideType("GhostBend", dvec); | 
| 1576 | + | #line 1577 "MDTreeParser.cpp" | 
| 1577 | + | break; | 
| 1578 | + | } | 
| 1579 | + | case UREYBRADLEY: | 
| 1580 | + | { | 
| 1581 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t66 = _t; | 
| 1582 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp49_AST_in = _t; | 
| 1583 | + | match(_t,UREYBRADLEY); | 
| 1584 | + | _t = _t->getFirstChild(); | 
| 1585 | + | dvec=doubleNumberTuple(_t); | 
| 1586 | + | _t = _retTree; | 
| 1587 | + | _t = __t66; | 
| 1588 | + | _t = _t->getNextSibling(); | 
| 1589 | + | #line 194 "MDTreeParser.g" | 
| 1590 | + | currBendStamp->overrideType("UreyBradley", dvec); | 
| 1591 | + | #line 1592 "MDTreeParser.cpp" | 
| 1592 | + | break; | 
| 1593 | + | } | 
| 1594 | + | case CUBIC: | 
| 1595 | + | { | 
| 1596 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t67 = _t; | 
| 1597 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp50_AST_in = _t; | 
| 1598 | + | match(_t,CUBIC); | 
| 1599 | + | _t = _t->getFirstChild(); | 
| 1600 | + | dvec=doubleNumberTuple(_t); | 
| 1601 | + | _t = _retTree; | 
| 1602 | + | _t = __t67; | 
| 1603 | + | _t = _t->getNextSibling(); | 
| 1604 | + | #line 195 "MDTreeParser.g" | 
| 1605 | + | currBendStamp->overrideType("Cubic", dvec); | 
| 1606 | + | #line 1607 "MDTreeParser.cpp" | 
| 1607 | + | break; | 
| 1608 | + | } | 
| 1609 | + | case QUARTIC: | 
| 1610 | + | { | 
| 1611 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t68 = _t; | 
| 1612 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp51_AST_in = _t; | 
| 1613 | + | match(_t,QUARTIC); | 
| 1614 | + | _t = _t->getFirstChild(); | 
| 1615 | + | dvec=doubleNumberTuple(_t); | 
| 1616 | + | _t = _retTree; | 
| 1617 | + | _t = __t68; | 
| 1618 | + | _t = _t->getNextSibling(); | 
| 1619 | + | #line 196 "MDTreeParser.g" | 
| 1620 | + | currBendStamp->overrideType("Quartic", dvec); | 
| 1621 | + | #line 1622 "MDTreeParser.cpp" | 
| 1622 | + | break; | 
| 1623 | + | } | 
| 1624 | + | case POLYNOMIAL: | 
| 1625 | + | { | 
| 1626 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t69 = _t; | 
| 1627 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp52_AST_in = _t; | 
| 1628 | + | match(_t,POLYNOMIAL); | 
| 1629 | + | _t = _t->getFirstChild(); | 
| 1630 | + | dvec=doubleNumberTuple(_t); | 
| 1631 | + | _t = _retTree; | 
| 1632 | + | _t = __t69; | 
| 1633 | + | _t = _t->getNextSibling(); | 
| 1634 | + | #line 197 "MDTreeParser.g" | 
| 1635 | + | currBendStamp->overrideType("Polynomial", dvec); | 
| 1636 | + | #line 1637 "MDTreeParser.cpp" | 
| 1637 | + | break; | 
| 1638 | + | } | 
| 1639 | + | case COSINE: | 
| 1640 | + | { | 
| 1641 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t70 = _t; | 
| 1642 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp53_AST_in = _t; | 
| 1643 | + | match(_t,COSINE); | 
| 1644 | + | _t = _t->getFirstChild(); | 
| 1645 | + | dvec=doubleNumberTuple(_t); | 
| 1646 | + | _t = _retTree; | 
| 1647 | + | _t = __t70; | 
| 1648 | + | _t = _t->getNextSibling(); | 
| 1649 | + | #line 198 "MDTreeParser.g" | 
| 1650 | + | currBendStamp->overrideType("Cosine", dvec); | 
| 1651 | + | #line 1652 "MDTreeParser.cpp" | 
| 1652 | + | break; | 
| 1653 | + | } | 
| 1654 |  | default: | 
| 1655 |  | { | 
| 1656 |  | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1667 |  |  | 
| 1668 |  | void MDTreeParser::torsionstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1669 |  | ANTLR_USE_NAMESPACE(antlr)RefAST torsionstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1670 | < | #line 191 "MDTreeParser.g" | 
| 1670 | > | #line 211 "MDTreeParser.g" | 
| 1671 |  |  | 
| 1672 |  | vector<int> ivec; | 
| 1673 | + | vector<RealType> dvec; | 
| 1674 |  | TorsionStamp* currTorsionStamp = static_cast<TorsionStamp*>(blockStack.top()); | 
| 1675 |  |  | 
| 1676 | < | #line 1412 "MDTreeParser.cpp" | 
| 1676 | > | #line 1677 "MDTreeParser.cpp" | 
| 1677 |  |  | 
| 1678 |  | try {      // for error handling | 
| 1679 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1687 |  | } | 
| 1688 |  | case MEMBERS: | 
| 1689 |  | { | 
| 1690 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t62 = _t; | 
| 1691 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp40_AST_in = _t; | 
| 1690 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t76 = _t; | 
| 1691 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp54_AST_in = _t; | 
| 1692 |  | match(_t,MEMBERS); | 
| 1693 |  | _t = _t->getFirstChild(); | 
| 1694 |  | ivec=inttuple(_t); | 
| 1695 |  | _t = _retTree; | 
| 1696 | < | _t = __t62; | 
| 1696 | > | _t = __t76; | 
| 1697 |  | _t = _t->getNextSibling(); | 
| 1698 | < | #line 197 "MDTreeParser.g" | 
| 1698 | > | #line 218 "MDTreeParser.g" | 
| 1699 |  | currTorsionStamp->setMembers(ivec); | 
| 1700 | < | #line 1436 "MDTreeParser.cpp" | 
| 1700 | > | #line 1701 "MDTreeParser.cpp" | 
| 1701 |  | break; | 
| 1702 |  | } | 
| 1703 | + | case GHOSTTORSION: | 
| 1704 | + | { | 
| 1705 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t77 = _t; | 
| 1706 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp55_AST_in = _t; | 
| 1707 | + | match(_t,GHOSTTORSION); | 
| 1708 | + | _t = _t->getFirstChild(); | 
| 1709 | + | dvec=doubleNumberTuple(_t); | 
| 1710 | + | _t = _retTree; | 
| 1711 | + | _t = __t77; | 
| 1712 | + | _t = _t->getNextSibling(); | 
| 1713 | + | #line 219 "MDTreeParser.g" | 
| 1714 | + | currTorsionStamp->overrideType("GhostTorsion", dvec); | 
| 1715 | + | #line 1716 "MDTreeParser.cpp" | 
| 1716 | + | break; | 
| 1717 | + | } | 
| 1718 | + | case CUBIC: | 
| 1719 | + | { | 
| 1720 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t78 = _t; | 
| 1721 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp56_AST_in = _t; | 
| 1722 | + | match(_t,CUBIC); | 
| 1723 | + | _t = _t->getFirstChild(); | 
| 1724 | + | dvec=doubleNumberTuple(_t); | 
| 1725 | + | _t = _retTree; | 
| 1726 | + | _t = __t78; | 
| 1727 | + | _t = _t->getNextSibling(); | 
| 1728 | + | #line 220 "MDTreeParser.g" | 
| 1729 | + | currTorsionStamp->overrideType("Cubic", dvec); | 
| 1730 | + | #line 1731 "MDTreeParser.cpp" | 
| 1731 | + | break; | 
| 1732 | + | } | 
| 1733 | + | case QUARTIC: | 
| 1734 | + | { | 
| 1735 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t79 = _t; | 
| 1736 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp57_AST_in = _t; | 
| 1737 | + | match(_t,QUARTIC); | 
| 1738 | + | _t = _t->getFirstChild(); | 
| 1739 | + | dvec=doubleNumberTuple(_t); | 
| 1740 | + | _t = _retTree; | 
| 1741 | + | _t = __t79; | 
| 1742 | + | _t = _t->getNextSibling(); | 
| 1743 | + | #line 221 "MDTreeParser.g" | 
| 1744 | + | currTorsionStamp->overrideType("Quartic", dvec); | 
| 1745 | + | #line 1746 "MDTreeParser.cpp" | 
| 1746 | + | break; | 
| 1747 | + | } | 
| 1748 | + | case POLYNOMIAL: | 
| 1749 | + | { | 
| 1750 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t80 = _t; | 
| 1751 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp58_AST_in = _t; | 
| 1752 | + | match(_t,POLYNOMIAL); | 
| 1753 | + | _t = _t->getFirstChild(); | 
| 1754 | + | dvec=doubleNumberTuple(_t); | 
| 1755 | + | _t = _retTree; | 
| 1756 | + | _t = __t80; | 
| 1757 | + | _t = _t->getNextSibling(); | 
| 1758 | + | #line 222 "MDTreeParser.g" | 
| 1759 | + | currTorsionStamp->overrideType("Polynomial", dvec); | 
| 1760 | + | #line 1761 "MDTreeParser.cpp" | 
| 1761 | + | break; | 
| 1762 | + | } | 
| 1763 | + | case CHARMM: | 
| 1764 | + | { | 
| 1765 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t81 = _t; | 
| 1766 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp59_AST_in = _t; | 
| 1767 | + | match(_t,CHARMM); | 
| 1768 | + | _t = _t->getFirstChild(); | 
| 1769 | + | dvec=doubleNumberTuple(_t); | 
| 1770 | + | _t = _retTree; | 
| 1771 | + | _t = __t81; | 
| 1772 | + | _t = _t->getNextSibling(); | 
| 1773 | + | #line 223 "MDTreeParser.g" | 
| 1774 | + | currTorsionStamp->overrideType("Charmm", dvec); | 
| 1775 | + | #line 1776 "MDTreeParser.cpp" | 
| 1776 | + | break; | 
| 1777 | + | } | 
| 1778 | + | case OPLS: | 
| 1779 | + | { | 
| 1780 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t82 = _t; | 
| 1781 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp60_AST_in = _t; | 
| 1782 | + | match(_t,OPLS); | 
| 1783 | + | _t = _t->getFirstChild(); | 
| 1784 | + | dvec=doubleNumberTuple(_t); | 
| 1785 | + | _t = _retTree; | 
| 1786 | + | _t = __t82; | 
| 1787 | + | _t = _t->getNextSibling(); | 
| 1788 | + | #line 224 "MDTreeParser.g" | 
| 1789 | + | currTorsionStamp->overrideType("Opls", dvec); | 
| 1790 | + | #line 1791 "MDTreeParser.cpp" | 
| 1791 | + | break; | 
| 1792 | + | } | 
| 1793 | + | case TRAPPE: | 
| 1794 | + | { | 
| 1795 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t83 = _t; | 
| 1796 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp61_AST_in = _t; | 
| 1797 | + | match(_t,TRAPPE); | 
| 1798 | + | _t = _t->getFirstChild(); | 
| 1799 | + | dvec=doubleNumberTuple(_t); | 
| 1800 | + | _t = _retTree; | 
| 1801 | + | _t = __t83; | 
| 1802 | + | _t = _t->getNextSibling(); | 
| 1803 | + | #line 225 "MDTreeParser.g" | 
| 1804 | + | currTorsionStamp->overrideType("Trappe", dvec); | 
| 1805 | + | #line 1806 "MDTreeParser.cpp" | 
| 1806 | + | break; | 
| 1807 | + | } | 
| 1808 | + | case HARMONIC: | 
| 1809 | + | { | 
| 1810 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t84 = _t; | 
| 1811 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp62_AST_in = _t; | 
| 1812 | + | match(_t,HARMONIC); | 
| 1813 | + | _t = _t->getFirstChild(); | 
| 1814 | + | dvec=doubleNumberTuple(_t); | 
| 1815 | + | _t = _retTree; | 
| 1816 | + | _t = __t84; | 
| 1817 | + | _t = _t->getNextSibling(); | 
| 1818 | + | #line 226 "MDTreeParser.g" | 
| 1819 | + | currTorsionStamp->overrideType("Harmonic", dvec); | 
| 1820 | + | #line 1821 "MDTreeParser.cpp" | 
| 1821 | + | break; | 
| 1822 | + | } | 
| 1823 |  | default: | 
| 1824 |  | { | 
| 1825 |  | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1836 |  |  | 
| 1837 |  | void MDTreeParser::inversionstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1838 |  | ANTLR_USE_NAMESPACE(antlr)RefAST inversionstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1839 | < | #line 210 "MDTreeParser.g" | 
| 1839 | > | #line 240 "MDTreeParser.g" | 
| 1840 |  |  | 
| 1841 |  | int icent; | 
| 1842 |  | vector<int> ivec; | 
| 1843 | + | vector<RealType> dvec; | 
| 1844 |  | InversionStamp* currInversionStamp = static_cast<InversionStamp*>(blockStack.top()); | 
| 1845 |  |  | 
| 1846 | < | #line 1461 "MDTreeParser.cpp" | 
| 1846 | > | #line 1847 "MDTreeParser.cpp" | 
| 1847 |  |  | 
| 1848 |  | try {      // for error handling | 
| 1849 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1857 |  | } | 
| 1858 |  | case CENTER: | 
| 1859 |  | { | 
| 1860 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t68 = _t; | 
| 1861 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp41_AST_in = _t; | 
| 1860 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t90 = _t; | 
| 1861 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp63_AST_in = _t; | 
| 1862 |  | match(_t,CENTER); | 
| 1863 |  | _t = _t->getFirstChild(); | 
| 1864 |  | icent=intConst(_t); | 
| 1865 |  | _t = _retTree; | 
| 1866 | < | _t = __t68; | 
| 1866 | > | _t = __t90; | 
| 1867 |  | _t = _t->getNextSibling(); | 
| 1868 | < | #line 217 "MDTreeParser.g" | 
| 1868 | > | #line 248 "MDTreeParser.g" | 
| 1869 |  | currInversionStamp->setCenter(icent); | 
| 1870 | < | #line 1485 "MDTreeParser.cpp" | 
| 1870 | > | #line 1871 "MDTreeParser.cpp" | 
| 1871 |  | break; | 
| 1872 |  | } | 
| 1873 |  | case SATELLITES: | 
| 1874 |  | { | 
| 1875 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t69 = _t; | 
| 1876 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp42_AST_in = _t; | 
| 1875 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t91 = _t; | 
| 1876 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp64_AST_in = _t; | 
| 1877 |  | match(_t,SATELLITES); | 
| 1878 |  | _t = _t->getFirstChild(); | 
| 1879 |  | ivec=inttuple(_t); | 
| 1880 |  | _t = _retTree; | 
| 1881 | < | _t = __t69; | 
| 1881 | > | _t = __t91; | 
| 1882 |  | _t = _t->getNextSibling(); | 
| 1883 | < | #line 218 "MDTreeParser.g" | 
| 1883 | > | #line 249 "MDTreeParser.g" | 
| 1884 |  | currInversionStamp->setSatellites(ivec); | 
| 1885 | < | #line 1500 "MDTreeParser.cpp" | 
| 1885 | > | #line 1886 "MDTreeParser.cpp" | 
| 1886 | > | break; | 
| 1887 | > | } | 
| 1888 | > | case AMBERIMPROPER: | 
| 1889 | > | { | 
| 1890 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t92 = _t; | 
| 1891 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp65_AST_in = _t; | 
| 1892 | > | match(_t,AMBERIMPROPER); | 
| 1893 | > | _t = _t->getFirstChild(); | 
| 1894 | > | dvec=doubleNumberTuple(_t); | 
| 1895 | > | _t = _retTree; | 
| 1896 | > | _t = __t92; | 
| 1897 | > | _t = _t->getNextSibling(); | 
| 1898 | > | #line 250 "MDTreeParser.g" | 
| 1899 | > | currInversionStamp->overrideType("AmberImproper", dvec); | 
| 1900 | > | #line 1901 "MDTreeParser.cpp" | 
| 1901 |  | break; | 
| 1902 |  | } | 
| 1903 | + | case IMPROPERCOSINE: | 
| 1904 | + | { | 
| 1905 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t93 = _t; | 
| 1906 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp66_AST_in = _t; | 
| 1907 | + | match(_t,IMPROPERCOSINE); | 
| 1908 | + | _t = _t->getFirstChild(); | 
| 1909 | + | dvec=doubleNumberTuple(_t); | 
| 1910 | + | _t = _retTree; | 
| 1911 | + | _t = __t93; | 
| 1912 | + | _t = _t->getNextSibling(); | 
| 1913 | + | #line 251 "MDTreeParser.g" | 
| 1914 | + | currInversionStamp->overrideType("ImproperCosine", dvec); | 
| 1915 | + | #line 1916 "MDTreeParser.cpp" | 
| 1916 | + | break; | 
| 1917 | + | } | 
| 1918 | + | case HARMONIC: | 
| 1919 | + | { | 
| 1920 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t94 = _t; | 
| 1921 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp67_AST_in = _t; | 
| 1922 | + | match(_t,HARMONIC); | 
| 1923 | + | _t = _t->getFirstChild(); | 
| 1924 | + | dvec=doubleNumberTuple(_t); | 
| 1925 | + | _t = _retTree; | 
| 1926 | + | _t = __t94; | 
| 1927 | + | _t = _t->getNextSibling(); | 
| 1928 | + | #line 252 "MDTreeParser.g" | 
| 1929 | + | currInversionStamp->overrideType("Harmonic", dvec); | 
| 1930 | + | #line 1931 "MDTreeParser.cpp" | 
| 1931 | + | break; | 
| 1932 | + | } | 
| 1933 | + | case CENTRALATOMHEIGHT: | 
| 1934 | + | { | 
| 1935 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t95 = _t; | 
| 1936 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp68_AST_in = _t; | 
| 1937 | + | match(_t,CENTRALATOMHEIGHT); | 
| 1938 | + | _t = _t->getFirstChild(); | 
| 1939 | + | dvec=doubleNumberTuple(_t); | 
| 1940 | + | _t = _retTree; | 
| 1941 | + | _t = __t95; | 
| 1942 | + | _t = _t->getNextSibling(); | 
| 1943 | + | #line 253 "MDTreeParser.g" | 
| 1944 | + | currInversionStamp->overrideType("CentralAtomHeight", dvec); | 
| 1945 | + | #line 1946 "MDTreeParser.cpp" | 
| 1946 | + | break; | 
| 1947 | + | } | 
| 1948 | + | case DREIDING: | 
| 1949 | + | { | 
| 1950 | + | ANTLR_USE_NAMESPACE(antlr)RefAST __t96 = _t; | 
| 1951 | + | ANTLR_USE_NAMESPACE(antlr)RefAST tmp69_AST_in = _t; | 
| 1952 | + | match(_t,DREIDING); | 
| 1953 | + | _t = _t->getFirstChild(); | 
| 1954 | + | dvec=doubleNumberTuple(_t); | 
| 1955 | + | _t = _retTree; | 
| 1956 | + | _t = __t96; | 
| 1957 | + | _t = _t->getNextSibling(); | 
| 1958 | + | #line 254 "MDTreeParser.g" | 
| 1959 | + | currInversionStamp->overrideType("Dreiding", dvec); | 
| 1960 | + | #line 1961 "MDTreeParser.cpp" | 
| 1961 | + | break; | 
| 1962 | + | } | 
| 1963 |  | default: | 
| 1964 |  | { | 
| 1965 |  | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1976 |  |  | 
| 1977 |  | void MDTreeParser::rigidbodystatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1978 |  | ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodystatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1979 | < | #line 235 "MDTreeParser.g" | 
| 1979 | > | #line 272 "MDTreeParser.g" | 
| 1980 |  |  | 
| 1981 |  | vector<int> ivec; | 
| 1982 |  | RigidBodyStamp* currRigidBodyStamp = static_cast<RigidBodyStamp*>(blockStack.top()); | 
| 1983 |  |  | 
| 1984 | < | #line 1524 "MDTreeParser.cpp" | 
| 1984 | > | #line 1985 "MDTreeParser.cpp" | 
| 1985 |  |  | 
| 1986 |  | try {      // for error handling | 
| 1987 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1995 |  | } | 
| 1996 |  | case MEMBERS: | 
| 1997 |  | { | 
| 1998 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t75 = _t; | 
| 1999 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp43_AST_in = _t; | 
| 1998 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t102 = _t; | 
| 1999 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp70_AST_in = _t; | 
| 2000 |  | match(_t,MEMBERS); | 
| 2001 |  | _t = _t->getFirstChild(); | 
| 2002 |  | ivec=inttuple(_t); | 
| 2003 |  | _t = _retTree; | 
| 2004 | < | _t = __t75; | 
| 2004 | > | _t = __t102; | 
| 2005 |  | _t = _t->getNextSibling(); | 
| 2006 | < | #line 241 "MDTreeParser.g" | 
| 2006 | > | #line 278 "MDTreeParser.g" | 
| 2007 |  | currRigidBodyStamp->setMembers(ivec); | 
| 2008 | < | #line 1548 "MDTreeParser.cpp" | 
| 2008 | > | #line 2009 "MDTreeParser.cpp" | 
| 2009 |  | break; | 
| 2010 |  | } | 
| 2011 |  | default: | 
| 2024 |  |  | 
| 2025 |  | void MDTreeParser::cutoffgroupstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 2026 |  | ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 2027 | < | #line 254 "MDTreeParser.g" | 
| 2027 | > | #line 291 "MDTreeParser.g" | 
| 2028 |  |  | 
| 2029 |  | vector<int> ivec; | 
| 2030 |  | CutoffGroupStamp* currCutoffGroupStamp = static_cast<CutoffGroupStamp*>(blockStack.top()); | 
| 2031 |  |  | 
| 2032 | < | #line 1572 "MDTreeParser.cpp" | 
| 2032 | > | #line 2033 "MDTreeParser.cpp" | 
| 2033 |  |  | 
| 2034 |  | try {      // for error handling | 
| 2035 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 2043 |  | } | 
| 2044 |  | case MEMBERS: | 
| 2045 |  | { | 
| 2046 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t81 = _t; | 
| 2047 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp44_AST_in = _t; | 
| 2046 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t108 = _t; | 
| 2047 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp71_AST_in = _t; | 
| 2048 |  | match(_t,MEMBERS); | 
| 2049 |  | _t = _t->getFirstChild(); | 
| 2050 |  | ivec=inttuple(_t); | 
| 2051 |  | _t = _retTree; | 
| 2052 | < | _t = __t81; | 
| 2052 | > | _t = __t108; | 
| 2053 |  | _t = _t->getNextSibling(); | 
| 2054 | < | #line 260 "MDTreeParser.g" | 
| 2054 | > | #line 297 "MDTreeParser.g" | 
| 2055 |  | currCutoffGroupStamp->setMembers(ivec); | 
| 2056 | < | #line 1596 "MDTreeParser.cpp" | 
| 2056 | > | #line 2057 "MDTreeParser.cpp" | 
| 2057 |  | break; | 
| 2058 |  | } | 
| 2059 |  | default: | 
| 2087 |  |  | 
| 2088 |  | void MDTreeParser::constraintstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 2089 |  | ANTLR_USE_NAMESPACE(antlr)RefAST constraintstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 2090 | < | #line 286 "MDTreeParser.g" | 
| 2090 | > | #line 323 "MDTreeParser.g" | 
| 2091 |  |  | 
| 2092 |  | vector<int> ivec; | 
| 2093 |  | ConstraintStamp* currConstraintStamp = static_cast<ConstraintStamp*>(blockStack.top()); | 
| 2094 |  |  | 
| 2095 | < | #line 1635 "MDTreeParser.cpp" | 
| 2095 | > | #line 2096 "MDTreeParser.cpp" | 
| 2096 |  |  | 
| 2097 |  | try {      // for error handling | 
| 2098 |  | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 2106 |  | } | 
| 2107 |  | case MEMBERS: | 
| 2108 |  | { | 
| 2109 | < | ANTLR_USE_NAMESPACE(antlr)RefAST __t92 = _t; | 
| 2110 | < | ANTLR_USE_NAMESPACE(antlr)RefAST tmp45_AST_in = _t; | 
| 2109 | > | ANTLR_USE_NAMESPACE(antlr)RefAST __t119 = _t; | 
| 2110 | > | ANTLR_USE_NAMESPACE(antlr)RefAST tmp72_AST_in = _t; | 
| 2111 |  | match(_t,MEMBERS); | 
| 2112 |  | _t = _t->getFirstChild(); | 
| 2113 |  | ivec=inttuple(_t); | 
| 2114 |  | _t = _retTree; | 
| 2115 | < | _t = __t92; | 
| 2115 | > | _t = __t119; | 
| 2116 |  | _t = _t->getNextSibling(); | 
| 2117 | < | #line 292 "MDTreeParser.g" | 
| 2117 | > | #line 329 "MDTreeParser.g" | 
| 2118 |  | currConstraintStamp->setMembers(ivec); | 
| 2119 | < | #line 1659 "MDTreeParser.cpp" | 
| 2119 | > | #line 2120 "MDTreeParser.cpp" | 
| 2120 |  | break; | 
| 2121 |  | } | 
| 2122 |  | default: | 
| 2133 |  | _retTree = _t; | 
| 2134 |  | } | 
| 2135 |  |  | 
| 1675 | – | RealType  MDTreeParser::doubleNumber(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { | 
| 1676 | – | #line 318 "MDTreeParser.g" | 
| 1677 | – | RealType dval; | 
| 1678 | – | #line 1679 "MDTreeParser.cpp" | 
| 1679 | – | ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumber_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1680 | – | ANTLR_USE_NAMESPACE(antlr)RefAST ic = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 1681 | – | ANTLR_USE_NAMESPACE(antlr)RefAST fc = ANTLR_USE_NAMESPACE(antlr)nullAST; | 
| 1682 | – |  | 
| 1683 | – | try {      // for error handling | 
| 1684 | – | if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1685 | – | _t = ASTNULL; | 
| 1686 | – | switch ( _t->getType()) { | 
| 1687 | – | case NUM_INT: | 
| 1688 | – | case NUM_LONG: | 
| 1689 | – | { | 
| 1690 | – | ic = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1691 | – | intConst(_t); | 
| 1692 | – | _t = _retTree; | 
| 1693 | – | #line 319 "MDTreeParser.g" | 
| 1694 | – | dval = lexi_cast<RealType>(ic->getText()); | 
| 1695 | – | #line 1696 "MDTreeParser.cpp" | 
| 1696 | – | break; | 
| 1697 | – | } | 
| 1698 | – | case NUM_FLOAT: | 
| 1699 | – | case NUM_DOUBLE: | 
| 1700 | – | { | 
| 1701 | – | fc = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; | 
| 1702 | – | floatConst(_t); | 
| 1703 | – | _t = _retTree; | 
| 1704 | – | #line 320 "MDTreeParser.g" | 
| 1705 | – | dval = lexi_cast<RealType>(fc->getText()); | 
| 1706 | – | #line 1707 "MDTreeParser.cpp" | 
| 1707 | – | break; | 
| 1708 | – | } | 
| 1709 | – | default: | 
| 1710 | – | { | 
| 1711 | – | throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); | 
| 1712 | – | } | 
| 1713 | – | } | 
| 1714 | – | } | 
| 1715 | – | catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { | 
| 1716 | – | reportError(ex); | 
| 1717 | – | if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) | 
| 1718 | – | _t = _t->getNextSibling(); | 
| 1719 | – | } | 
| 1720 | – | _retTree = _t; | 
| 1721 | – | return dval; | 
| 1722 | – | } | 
| 1723 | – |  | 
| 2136 |  | void MDTreeParser::initializeASTFactory( ANTLR_USE_NAMESPACE(antlr)ASTFactory& ) | 
| 2137 |  | { | 
| 2138 |  | } | 
| 2163 |  | "\"flucQ\"", | 
| 2164 |  | "\"RNEMD\"", | 
| 2165 |  | "\"minimizer\"", | 
| 2166 | + | "\"Fixed\"", | 
| 2167 | + | "\"Harmonic\"", | 
| 2168 | + | "\"Cubic\"", | 
| 2169 | + | "\"Quartic\"", | 
| 2170 | + | "\"Polynomial\"", | 
| 2171 | + | "\"Morse\"", | 
| 2172 | + | "\"GhostBend\"", | 
| 2173 | + | "\"UreyBradley\"", | 
| 2174 | + | "\"Cosine\"", | 
| 2175 | + | "\"GhostTorsion\"", | 
| 2176 | + | "\"Charmm\"", | 
| 2177 | + | "\"Opls\"", | 
| 2178 | + | "\"Trappe\"", | 
| 2179 | + | "\"AmberImproper\"", | 
| 2180 | + | "\"ImproperCosine\"", | 
| 2181 | + | "\"CentralAtomHeight\"", | 
| 2182 | + | "\"Dreiding\"", | 
| 2183 | + | "\"charge\"", | 
| 2184 |  | "ENDBLOCK", | 
| 2185 |  | "ID", | 
| 2186 |  | "ASSIGNEQUAL", | 
| 2218 |  | 0 | 
| 2219 |  | }; | 
| 2220 |  |  | 
| 2221 | < | const unsigned long MDTreeParser::_tokenSet_0_data_[] = { 327155952UL, 0UL, 0UL, 0UL }; | 
| 2221 | > | const unsigned long MDTreeParser::_tokenSet_0_data_[] = { 58720496UL, 16384UL, 0UL, 0UL }; | 
| 2222 |  | // "component" "molecule" "zconstraint" "restraint" "flucQ" "RNEMD" "minimizer" | 
| 2223 |  | // ASSIGNEQUAL | 
| 2224 |  | const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_0(_tokenSet_0_data_,4); | 
| 2225 | < | const unsigned long MDTreeParser::_tokenSet_1_data_[] = { 268631808UL, 0UL, 0UL, 0UL }; | 
| 2225 | > | const unsigned long MDTreeParser::_tokenSet_1_data_[] = { 196352UL, 16384UL, 0UL, 0UL }; | 
| 2226 |  | // "atom" "bond" "bend" "torsion" "inversion" "rigidBody" "cutoffGroup" | 
| 2227 |  | // "constraint" "fragment" ASSIGNEQUAL | 
| 2228 |  | const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_1(_tokenSet_1_data_,4); | 
| 2229 | + | const unsigned long MDTreeParser::_tokenSet_2_data_[] = { 6291456UL, 18432UL, 0UL, 0UL }; | 
| 2230 | + | // "position" "orientation" "charge" ASSIGNEQUAL | 
| 2231 | + | const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_2(_tokenSet_2_data_,4); | 
| 2232 | + | const unsigned long MDTreeParser::_tokenSet_3_data_[] = { 4228120576UL, 16384UL, 0UL, 0UL }; | 
| 2233 | + | // "members" "Fixed" "Harmonic" "Cubic" "Quartic" "Polynomial" "Morse" | 
| 2234 | + | // ASSIGNEQUAL | 
| 2235 | + | const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_3(_tokenSet_3_data_,4); | 
| 2236 | + | const unsigned long MDTreeParser::_tokenSet_4_data_[] = { 2013528064UL, 16391UL, 0UL, 0UL }; | 
| 2237 | + | // "members" "Harmonic" "Cubic" "Quartic" "Polynomial" "GhostBend" "UreyBradley" | 
| 2238 | + | // "Cosine" ASSIGNEQUAL | 
| 2239 | + | const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_4(_tokenSet_4_data_,4); | 
| 2240 | + | const unsigned long MDTreeParser::_tokenSet_5_data_[] = { 2013528064UL, 16504UL, 0UL, 0UL }; | 
| 2241 | + | // "members" "Harmonic" "Cubic" "Quartic" "Polynomial" "GhostTorsion" "Charmm" | 
| 2242 | + | // "Opls" "Trappe" ASSIGNEQUAL | 
| 2243 | + | const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_5(_tokenSet_5_data_,4); | 
| 2244 | + | const unsigned long MDTreeParser::_tokenSet_6_data_[] = { 135790592UL, 18304UL, 0UL, 0UL }; | 
| 2245 | + | // "center" "satellites" "Harmonic" "AmberImproper" "ImproperCosine" "CentralAtomHeight" | 
| 2246 | + | // "Dreiding" ASSIGNEQUAL | 
| 2247 | + | const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_6(_tokenSet_6_data_,4); | 
| 2248 |  |  | 
| 2249 |  |  |