| 447 |
|
#line 50 "MDTreeParser.g" |
| 448 |
|
|
| 449 |
|
int ival; |
| 450 |
< |
RealType dval, x, y, z; |
| 450 |
> |
RealType dval; |
| 451 |
|
std::vector<RealType> dvec; |
| 452 |
|
|
| 453 |
|
#line 454 "MDTreeParser.cpp" |
| 534 |
|
} |
| 535 |
|
|
| 536 |
|
int MDTreeParser::intConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
| 537 |
< |
#line 312 "MDTreeParser.g" |
| 537 |
> |
#line 349 "MDTreeParser.g" |
| 538 |
|
int ival; |
| 539 |
|
#line 540 "MDTreeParser.cpp" |
| 540 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST intConst_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 550 |
|
i1 = _t; |
| 551 |
|
match(_t,NUM_INT); |
| 552 |
|
_t = _t->getNextSibling(); |
| 553 |
< |
#line 313 "MDTreeParser.g" |
| 553 |
> |
#line 350 "MDTreeParser.g" |
| 554 |
|
ival = lexi_cast<int>(i1->getText()); |
| 555 |
|
#line 556 "MDTreeParser.cpp" |
| 556 |
|
break; |
| 560 |
|
i2 = _t; |
| 561 |
|
match(_t,NUM_LONG); |
| 562 |
|
_t = _t->getNextSibling(); |
| 563 |
< |
#line 314 "MDTreeParser.g" |
| 563 |
> |
#line 351 "MDTreeParser.g" |
| 564 |
|
ival = lexi_cast<int>(i2->getText()); |
| 565 |
|
#line 566 "MDTreeParser.cpp" |
| 566 |
|
break; |
| 581 |
|
} |
| 582 |
|
|
| 583 |
|
RealType MDTreeParser::floatConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
| 584 |
< |
#line 324 "MDTreeParser.g" |
| 584 |
> |
#line 361 "MDTreeParser.g" |
| 585 |
|
RealType dval; |
| 586 |
|
#line 587 "MDTreeParser.cpp" |
| 587 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST floatConst_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 597 |
|
d1 = _t; |
| 598 |
|
match(_t,NUM_FLOAT); |
| 599 |
|
_t = _t->getNextSibling(); |
| 600 |
< |
#line 325 "MDTreeParser.g" |
| 600 |
> |
#line 362 "MDTreeParser.g" |
| 601 |
|
dval = lexi_cast<RealType>(d1->getText()); |
| 602 |
|
#line 603 "MDTreeParser.cpp" |
| 603 |
|
break; |
| 607 |
|
d2 = _t; |
| 608 |
|
match(_t,NUM_DOUBLE); |
| 609 |
|
_t = _t->getNextSibling(); |
| 610 |
< |
#line 326 "MDTreeParser.g" |
| 610 |
> |
#line 363 "MDTreeParser.g" |
| 611 |
|
dval = lexi_cast<RealType>(d2->getText()); |
| 612 |
|
#line 613 "MDTreeParser.cpp" |
| 613 |
|
break; |
| 628 |
|
} |
| 629 |
|
|
| 630 |
|
vector<RealType> MDTreeParser::doubleNumberTuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
| 631 |
< |
#line 296 "MDTreeParser.g" |
| 631 |
> |
#line 333 "MDTreeParser.g" |
| 632 |
|
vector<RealType> dvec; |
| 633 |
|
#line 634 "MDTreeParser.cpp" |
| 634 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumberTuple_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 635 |
< |
#line 296 "MDTreeParser.g" |
| 635 |
> |
#line 333 "MDTreeParser.g" |
| 636 |
|
|
| 637 |
|
RealType dval; |
| 638 |
|
|
| 640 |
|
|
| 641 |
|
try { // for error handling |
| 642 |
|
{ // ( ... )+ |
| 643 |
< |
int _cnt95=0; |
| 643 |
> |
int _cnt122=0; |
| 644 |
|
for (;;) { |
| 645 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 646 |
|
_t = ASTNULL; |
| 647 |
|
if (((_t->getType() >= NUM_INT && _t->getType() <= NUM_DOUBLE))) { |
| 648 |
|
dval=doubleNumber(_t); |
| 649 |
|
_t = _retTree; |
| 650 |
< |
#line 300 "MDTreeParser.g" |
| 650 |
> |
#line 337 "MDTreeParser.g" |
| 651 |
|
dvec.push_back(dval); |
| 652 |
|
#line 653 "MDTreeParser.cpp" |
| 653 |
|
} |
| 654 |
|
else { |
| 655 |
< |
if ( _cnt95>=1 ) { goto _loop95; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} |
| 655 |
> |
if ( _cnt122>=1 ) { goto _loop122; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} |
| 656 |
|
} |
| 657 |
|
|
| 658 |
< |
_cnt95++; |
| 658 |
> |
_cnt122++; |
| 659 |
|
} |
| 660 |
< |
_loop95:; |
| 660 |
> |
_loop122:; |
| 661 |
|
} // ( ... )+ |
| 662 |
|
} |
| 663 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
| 772 |
|
for (;;) { |
| 773 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 774 |
|
_t = ASTNULL; |
| 775 |
< |
if ((_t->getType() == POSITION || _t->getType() == ORIENTATION || _t->getType() == ASSIGNEQUAL)) { |
| 775 |
> |
if ((_tokenSet_2.member(_t->getType()))) { |
| 776 |
|
atomstatement(_t); |
| 777 |
|
_t = _retTree; |
| 778 |
|
} |
| 809 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST bondblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 810 |
|
|
| 811 |
|
try { // for error handling |
| 812 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t46 = _t; |
| 812 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t47 = _t; |
| 813 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp20_AST_in = _t; |
| 814 |
|
match(_t,BOND); |
| 815 |
|
_t = _t->getFirstChild(); |
| 816 |
< |
#line 144 "MDTreeParser.g" |
| 816 |
> |
#line 147 "MDTreeParser.g" |
| 817 |
|
BondStamp* currBondStamp = new BondStamp(); blockStack.push(currBondStamp); |
| 818 |
|
#line 819 "MDTreeParser.cpp" |
| 819 |
|
{ // ( ... )* |
| 820 |
|
for (;;) { |
| 821 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 822 |
|
_t = ASTNULL; |
| 823 |
< |
if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { |
| 823 |
> |
if ((_tokenSet_3.member(_t->getType()))) { |
| 824 |
|
bondstatement(_t); |
| 825 |
|
_t = _retTree; |
| 826 |
|
} |
| 827 |
|
else { |
| 828 |
< |
goto _loop48; |
| 828 |
> |
goto _loop49; |
| 829 |
|
} |
| 830 |
|
|
| 831 |
|
} |
| 832 |
< |
_loop48:; |
| 832 |
> |
_loop49:; |
| 833 |
|
} // ( ... )* |
| 834 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp21_AST_in = _t; |
| 835 |
|
match(_t,ENDBLOCK); |
| 836 |
|
_t = _t->getNextSibling(); |
| 837 |
< |
_t = __t46; |
| 837 |
> |
_t = __t47; |
| 838 |
|
_t = _t->getNextSibling(); |
| 839 |
< |
#line 146 "MDTreeParser.g" |
| 839 |
> |
#line 149 "MDTreeParser.g" |
| 840 |
|
|
| 841 |
+ |
blockStack.top()->validate(); |
| 842 |
|
blockStack.pop(); |
| 843 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
| 844 |
|
currMoleculeStamp->addBondStamp(currBondStamp); |
| 845 |
|
|
| 846 |
< |
#line 846 "MDTreeParser.cpp" |
| 846 |
> |
#line 847 "MDTreeParser.cpp" |
| 847 |
|
} |
| 848 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
| 849 |
|
reportError(ex); |
| 857 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST bendblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 858 |
|
|
| 859 |
|
try { // for error handling |
| 860 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t52 = _t; |
| 860 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t59 = _t; |
| 861 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp22_AST_in = _t; |
| 862 |
|
match(_t,BEND); |
| 863 |
|
_t = _t->getFirstChild(); |
| 864 |
< |
#line 162 "MDTreeParser.g" |
| 864 |
> |
#line 174 "MDTreeParser.g" |
| 865 |
|
BendStamp* currBendStamp = new BendStamp(); blockStack.push(currBendStamp); |
| 866 |
< |
#line 866 "MDTreeParser.cpp" |
| 866 |
> |
#line 867 "MDTreeParser.cpp" |
| 867 |
|
{ // ( ... )* |
| 868 |
|
for (;;) { |
| 869 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 870 |
|
_t = ASTNULL; |
| 871 |
< |
if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { |
| 871 |
> |
if ((_tokenSet_4.member(_t->getType()))) { |
| 872 |
|
bendstatement(_t); |
| 873 |
|
_t = _retTree; |
| 874 |
|
} |
| 875 |
|
else { |
| 876 |
< |
goto _loop54; |
| 876 |
> |
goto _loop61; |
| 877 |
|
} |
| 878 |
|
|
| 879 |
|
} |
| 880 |
< |
_loop54:; |
| 880 |
> |
_loop61:; |
| 881 |
|
} // ( ... )* |
| 882 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp23_AST_in = _t; |
| 883 |
|
match(_t,ENDBLOCK); |
| 884 |
|
_t = _t->getNextSibling(); |
| 885 |
< |
_t = __t52; |
| 885 |
> |
_t = __t59; |
| 886 |
|
_t = _t->getNextSibling(); |
| 887 |
< |
#line 164 "MDTreeParser.g" |
| 887 |
> |
#line 176 "MDTreeParser.g" |
| 888 |
|
|
| 889 |
|
blockStack.top()->validate(); |
| 890 |
|
blockStack.pop(); |
| 891 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
| 892 |
|
currMoleculeStamp->addBendStamp(currBendStamp); |
| 893 |
|
|
| 894 |
< |
#line 894 "MDTreeParser.cpp" |
| 894 |
> |
#line 895 "MDTreeParser.cpp" |
| 895 |
|
} |
| 896 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
| 897 |
|
reportError(ex); |
| 905 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST torsionblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 906 |
|
|
| 907 |
|
try { // for error handling |
| 908 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t58 = _t; |
| 908 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t72 = _t; |
| 909 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp24_AST_in = _t; |
| 910 |
|
match(_t,TORSION); |
| 911 |
|
_t = _t->getFirstChild(); |
| 912 |
< |
#line 181 "MDTreeParser.g" |
| 912 |
> |
#line 201 "MDTreeParser.g" |
| 913 |
|
TorsionStamp* currTorsionStamp = new TorsionStamp(); blockStack.push(currTorsionStamp); |
| 914 |
< |
#line 914 "MDTreeParser.cpp" |
| 914 |
> |
#line 915 "MDTreeParser.cpp" |
| 915 |
|
{ // ( ... )* |
| 916 |
|
for (;;) { |
| 917 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 918 |
|
_t = ASTNULL; |
| 919 |
< |
if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { |
| 919 |
> |
if ((_tokenSet_5.member(_t->getType()))) { |
| 920 |
|
torsionstatement(_t); |
| 921 |
|
_t = _retTree; |
| 922 |
|
} |
| 923 |
|
else { |
| 924 |
< |
goto _loop60; |
| 924 |
> |
goto _loop74; |
| 925 |
|
} |
| 926 |
|
|
| 927 |
|
} |
| 928 |
< |
_loop60:; |
| 928 |
> |
_loop74:; |
| 929 |
|
} // ( ... )* |
| 930 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp25_AST_in = _t; |
| 931 |
|
match(_t,ENDBLOCK); |
| 932 |
|
_t = _t->getNextSibling(); |
| 933 |
< |
_t = __t58; |
| 933 |
> |
_t = __t72; |
| 934 |
|
_t = _t->getNextSibling(); |
| 935 |
< |
#line 183 "MDTreeParser.g" |
| 935 |
> |
#line 203 "MDTreeParser.g" |
| 936 |
|
|
| 937 |
|
blockStack.top()->validate(); |
| 938 |
|
blockStack.pop(); |
| 939 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
| 940 |
|
currMoleculeStamp->addTorsionStamp(currTorsionStamp); |
| 941 |
|
|
| 942 |
< |
#line 942 "MDTreeParser.cpp" |
| 942 |
> |
#line 943 "MDTreeParser.cpp" |
| 943 |
|
} |
| 944 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
| 945 |
|
reportError(ex); |
| 953 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST inversionblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 954 |
|
|
| 955 |
|
try { // for error handling |
| 956 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t64 = _t; |
| 956 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t86 = _t; |
| 957 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp26_AST_in = _t; |
| 958 |
|
match(_t,INVERSION); |
| 959 |
|
_t = _t->getFirstChild(); |
| 960 |
< |
#line 200 "MDTreeParser.g" |
| 960 |
> |
#line 230 "MDTreeParser.g" |
| 961 |
|
InversionStamp* currInversionStamp = new InversionStamp(); blockStack.push(currInversionStamp); |
| 962 |
< |
#line 962 "MDTreeParser.cpp" |
| 962 |
> |
#line 963 "MDTreeParser.cpp" |
| 963 |
|
{ // ( ... )* |
| 964 |
|
for (;;) { |
| 965 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 966 |
|
_t = ASTNULL; |
| 967 |
< |
if ((_t->getType() == CENTER || _t->getType() == SATELLITES || _t->getType() == ASSIGNEQUAL)) { |
| 967 |
> |
if ((_tokenSet_6.member(_t->getType()))) { |
| 968 |
|
inversionstatement(_t); |
| 969 |
|
_t = _retTree; |
| 970 |
|
} |
| 971 |
|
else { |
| 972 |
< |
goto _loop66; |
| 972 |
> |
goto _loop88; |
| 973 |
|
} |
| 974 |
|
|
| 975 |
|
} |
| 976 |
< |
_loop66:; |
| 976 |
> |
_loop88:; |
| 977 |
|
} // ( ... )* |
| 978 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp27_AST_in = _t; |
| 979 |
|
match(_t,ENDBLOCK); |
| 980 |
|
_t = _t->getNextSibling(); |
| 981 |
< |
_t = __t64; |
| 981 |
> |
_t = __t86; |
| 982 |
|
_t = _t->getNextSibling(); |
| 983 |
< |
#line 202 "MDTreeParser.g" |
| 983 |
> |
#line 232 "MDTreeParser.g" |
| 984 |
|
|
| 985 |
|
blockStack.top()->validate(); |
| 986 |
|
blockStack.pop(); |
| 987 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
| 988 |
|
currMoleculeStamp->addInversionStamp(currInversionStamp); |
| 989 |
|
|
| 990 |
< |
#line 990 "MDTreeParser.cpp" |
| 990 |
> |
#line 991 "MDTreeParser.cpp" |
| 991 |
|
} |
| 992 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
| 993 |
|
reportError(ex); |
| 999 |
|
|
| 1000 |
|
void MDTreeParser::rigidbodyblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
| 1001 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodyblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 1002 |
< |
#line 221 "MDTreeParser.g" |
| 1002 |
> |
#line 258 "MDTreeParser.g" |
| 1003 |
|
|
| 1004 |
|
int index; |
| 1005 |
|
|
| 1006 |
< |
#line 1006 "MDTreeParser.cpp" |
| 1006 |
> |
#line 1007 "MDTreeParser.cpp" |
| 1007 |
|
|
| 1008 |
|
try { // for error handling |
| 1009 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t71 = _t; |
| 1009 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t98 = _t; |
| 1010 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp28_AST_in = _t; |
| 1011 |
|
match(_t,RIGIDBODY); |
| 1012 |
|
_t = _t->getFirstChild(); |
| 1013 |
|
index=intConst(_t); |
| 1014 |
|
_t = _retTree; |
| 1015 |
< |
#line 225 "MDTreeParser.g" |
| 1015 |
> |
#line 262 "MDTreeParser.g" |
| 1016 |
|
RigidBodyStamp* currRigidBodyStamp = new RigidBodyStamp(index); blockStack.push(currRigidBodyStamp); |
| 1017 |
< |
#line 1017 "MDTreeParser.cpp" |
| 1017 |
> |
#line 1018 "MDTreeParser.cpp" |
| 1018 |
|
{ // ( ... )* |
| 1019 |
|
for (;;) { |
| 1020 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 1024 |
|
_t = _retTree; |
| 1025 |
|
} |
| 1026 |
|
else { |
| 1027 |
< |
goto _loop73; |
| 1027 |
> |
goto _loop100; |
| 1028 |
|
} |
| 1029 |
|
|
| 1030 |
|
} |
| 1031 |
< |
_loop73:; |
| 1031 |
> |
_loop100:; |
| 1032 |
|
} // ( ... )* |
| 1033 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp29_AST_in = _t; |
| 1034 |
|
match(_t,ENDBLOCK); |
| 1035 |
|
_t = _t->getNextSibling(); |
| 1036 |
< |
_t = __t71; |
| 1036 |
> |
_t = __t98; |
| 1037 |
|
_t = _t->getNextSibling(); |
| 1038 |
< |
#line 227 "MDTreeParser.g" |
| 1038 |
> |
#line 264 "MDTreeParser.g" |
| 1039 |
|
|
| 1040 |
|
blockStack.top()->validate(); |
| 1041 |
|
blockStack.pop(); |
| 1042 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
| 1043 |
|
currMoleculeStamp->addRigidBodyStamp(currRigidBodyStamp); |
| 1044 |
|
|
| 1045 |
< |
#line 1045 "MDTreeParser.cpp" |
| 1045 |
> |
#line 1046 "MDTreeParser.cpp" |
| 1046 |
|
} |
| 1047 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
| 1048 |
|
reportError(ex); |
| 1056 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 1057 |
|
|
| 1058 |
|
try { // for error handling |
| 1059 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t77 = _t; |
| 1059 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t104 = _t; |
| 1060 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp30_AST_in = _t; |
| 1061 |
|
match(_t,CUTOFFGROUP); |
| 1062 |
|
_t = _t->getFirstChild(); |
| 1063 |
< |
#line 244 "MDTreeParser.g" |
| 1063 |
> |
#line 281 "MDTreeParser.g" |
| 1064 |
|
CutoffGroupStamp* currCutoffGroupStamp = new CutoffGroupStamp(); blockStack.push(currCutoffGroupStamp); |
| 1065 |
< |
#line 1065 "MDTreeParser.cpp" |
| 1065 |
> |
#line 1066 "MDTreeParser.cpp" |
| 1066 |
|
{ // ( ... )* |
| 1067 |
|
for (;;) { |
| 1068 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 1072 |
|
_t = _retTree; |
| 1073 |
|
} |
| 1074 |
|
else { |
| 1075 |
< |
goto _loop79; |
| 1075 |
> |
goto _loop106; |
| 1076 |
|
} |
| 1077 |
|
|
| 1078 |
|
} |
| 1079 |
< |
_loop79:; |
| 1079 |
> |
_loop106:; |
| 1080 |
|
} // ( ... )* |
| 1081 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp31_AST_in = _t; |
| 1082 |
|
match(_t,ENDBLOCK); |
| 1083 |
|
_t = _t->getNextSibling(); |
| 1084 |
< |
_t = __t77; |
| 1084 |
> |
_t = __t104; |
| 1085 |
|
_t = _t->getNextSibling(); |
| 1086 |
< |
#line 246 "MDTreeParser.g" |
| 1086 |
> |
#line 283 "MDTreeParser.g" |
| 1087 |
|
|
| 1088 |
|
blockStack.top()->validate(); |
| 1089 |
|
blockStack.pop(); |
| 1090 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
| 1091 |
|
currMoleculeStamp->addCutoffGroupStamp(currCutoffGroupStamp); |
| 1092 |
|
|
| 1093 |
< |
#line 1093 "MDTreeParser.cpp" |
| 1093 |
> |
#line 1094 "MDTreeParser.cpp" |
| 1094 |
|
} |
| 1095 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
| 1096 |
|
reportError(ex); |
| 1102 |
|
|
| 1103 |
|
void MDTreeParser::fragmentblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
| 1104 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST fragmentblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 1105 |
< |
#line 263 "MDTreeParser.g" |
| 1105 |
> |
#line 300 "MDTreeParser.g" |
| 1106 |
|
int ival; |
| 1107 |
< |
#line 1107 "MDTreeParser.cpp" |
| 1107 |
> |
#line 1108 "MDTreeParser.cpp" |
| 1108 |
|
|
| 1109 |
|
try { // for error handling |
| 1110 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t83 = _t; |
| 1110 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t110 = _t; |
| 1111 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp32_AST_in = _t; |
| 1112 |
|
match(_t,FRAGMENT); |
| 1113 |
|
_t = _t->getFirstChild(); |
| 1114 |
|
ival=intConst(_t); |
| 1115 |
|
_t = _retTree; |
| 1116 |
< |
#line 264 "MDTreeParser.g" |
| 1116 |
> |
#line 301 "MDTreeParser.g" |
| 1117 |
|
FragmentStamp* currFragmentStamp = new FragmentStamp(ival); blockStack.push(currFragmentStamp); |
| 1118 |
< |
#line 1118 "MDTreeParser.cpp" |
| 1118 |
> |
#line 1119 "MDTreeParser.cpp" |
| 1119 |
|
{ // ( ... )* |
| 1120 |
|
for (;;) { |
| 1121 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 1125 |
|
_t = _retTree; |
| 1126 |
|
} |
| 1127 |
|
else { |
| 1128 |
< |
goto _loop85; |
| 1128 |
> |
goto _loop112; |
| 1129 |
|
} |
| 1130 |
|
|
| 1131 |
|
} |
| 1132 |
< |
_loop85:; |
| 1132 |
> |
_loop112:; |
| 1133 |
|
} // ( ... )* |
| 1134 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp33_AST_in = _t; |
| 1135 |
|
match(_t,ENDBLOCK); |
| 1136 |
|
_t = _t->getNextSibling(); |
| 1137 |
< |
_t = __t83; |
| 1137 |
> |
_t = __t110; |
| 1138 |
|
_t = _t->getNextSibling(); |
| 1139 |
< |
#line 266 "MDTreeParser.g" |
| 1139 |
> |
#line 303 "MDTreeParser.g" |
| 1140 |
|
|
| 1141 |
|
blockStack.top()->validate(); |
| 1142 |
|
blockStack.pop(); |
| 1143 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
| 1144 |
|
currMoleculeStamp->addFragmentStamp(currFragmentStamp); |
| 1145 |
|
|
| 1146 |
< |
#line 1146 "MDTreeParser.cpp" |
| 1146 |
> |
#line 1147 "MDTreeParser.cpp" |
| 1147 |
|
} |
| 1148 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
| 1149 |
|
reportError(ex); |
| 1157 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST constraintblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 1158 |
|
|
| 1159 |
|
try { // for error handling |
| 1160 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t88 = _t; |
| 1160 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t115 = _t; |
| 1161 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp34_AST_in = _t; |
| 1162 |
|
match(_t,CONSTRAINT); |
| 1163 |
|
_t = _t->getFirstChild(); |
| 1164 |
< |
#line 277 "MDTreeParser.g" |
| 1164 |
> |
#line 314 "MDTreeParser.g" |
| 1165 |
|
ConstraintStamp* currConstraintStamp = new ConstraintStamp(); blockStack.push(currConstraintStamp); |
| 1166 |
< |
#line 1166 "MDTreeParser.cpp" |
| 1166 |
> |
#line 1167 "MDTreeParser.cpp" |
| 1167 |
|
{ // ( ... )* |
| 1168 |
|
for (;;) { |
| 1169 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 1173 |
|
_t = _retTree; |
| 1174 |
|
} |
| 1175 |
|
else { |
| 1176 |
< |
goto _loop90; |
| 1176 |
> |
goto _loop117; |
| 1177 |
|
} |
| 1178 |
|
|
| 1179 |
|
} |
| 1180 |
< |
_loop90:; |
| 1180 |
> |
_loop117:; |
| 1181 |
|
} // ( ... )* |
| 1182 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp35_AST_in = _t; |
| 1183 |
|
match(_t,ENDBLOCK); |
| 1184 |
|
_t = _t->getNextSibling(); |
| 1185 |
< |
_t = __t88; |
| 1185 |
> |
_t = __t115; |
| 1186 |
|
_t = _t->getNextSibling(); |
| 1187 |
< |
#line 279 "MDTreeParser.g" |
| 1187 |
> |
#line 316 "MDTreeParser.g" |
| 1188 |
|
|
| 1189 |
|
blockStack.pop(); |
| 1190 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
| 1191 |
|
currMoleculeStamp->addConstraintStamp(currConstraintStamp); |
| 1192 |
|
|
| 1193 |
< |
#line 1193 "MDTreeParser.cpp" |
| 1193 |
> |
#line 1194 "MDTreeParser.cpp" |
| 1194 |
|
} |
| 1195 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
| 1196 |
|
reportError(ex); |
| 1205 |
|
#line 132 "MDTreeParser.g" |
| 1206 |
|
|
| 1207 |
|
vector<RealType> dvec; |
| 1208 |
+ |
RealType rval; |
| 1209 |
|
AtomStamp* currAtomStamp = static_cast<AtomStamp*>(blockStack.top()); |
| 1210 |
|
|
| 1211 |
|
|
| 1212 |
< |
#line 1211 "MDTreeParser.cpp" |
| 1212 |
> |
#line 1213 "MDTreeParser.cpp" |
| 1213 |
|
|
| 1214 |
|
try { // for error handling |
| 1215 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 1231 |
|
_t = _retTree; |
| 1232 |
|
_t = __t43; |
| 1233 |
|
_t = _t->getNextSibling(); |
| 1234 |
< |
#line 139 "MDTreeParser.g" |
| 1234 |
> |
#line 140 "MDTreeParser.g" |
| 1235 |
|
currAtomStamp->setPosition(dvec); |
| 1236 |
< |
#line 1235 "MDTreeParser.cpp" |
| 1236 |
> |
#line 1237 "MDTreeParser.cpp" |
| 1237 |
|
break; |
| 1238 |
|
} |
| 1239 |
|
case ORIENTATION: |
| 1246 |
|
_t = _retTree; |
| 1247 |
|
_t = __t44; |
| 1248 |
|
_t = _t->getNextSibling(); |
| 1249 |
< |
#line 140 "MDTreeParser.g" |
| 1249 |
> |
#line 141 "MDTreeParser.g" |
| 1250 |
|
currAtomStamp->setOrientation(dvec); |
| 1251 |
< |
#line 1250 "MDTreeParser.cpp" |
| 1251 |
> |
#line 1252 "MDTreeParser.cpp" |
| 1252 |
> |
break; |
| 1253 |
> |
} |
| 1254 |
> |
case CHARGE: |
| 1255 |
> |
{ |
| 1256 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t45 = _t; |
| 1257 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp38_AST_in = _t; |
| 1258 |
> |
match(_t,CHARGE); |
| 1259 |
> |
_t = _t->getFirstChild(); |
| 1260 |
> |
rval=doubleNumber(_t); |
| 1261 |
> |
_t = _retTree; |
| 1262 |
> |
_t = __t45; |
| 1263 |
> |
_t = _t->getNextSibling(); |
| 1264 |
> |
#line 142 "MDTreeParser.g" |
| 1265 |
> |
currAtomStamp->overrideCharge(rval); |
| 1266 |
> |
#line 1267 "MDTreeParser.cpp" |
| 1267 |
> |
break; |
| 1268 |
> |
} |
| 1269 |
> |
default: |
| 1270 |
> |
{ |
| 1271 |
> |
throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); |
| 1272 |
> |
} |
| 1273 |
> |
} |
| 1274 |
> |
} |
| 1275 |
> |
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
| 1276 |
> |
reportError(ex); |
| 1277 |
> |
if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 1278 |
> |
_t = _t->getNextSibling(); |
| 1279 |
> |
} |
| 1280 |
> |
_retTree = _t; |
| 1281 |
> |
} |
| 1282 |
> |
|
| 1283 |
> |
RealType MDTreeParser::doubleNumber(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
| 1284 |
> |
#line 355 "MDTreeParser.g" |
| 1285 |
> |
RealType dval; |
| 1286 |
> |
#line 1287 "MDTreeParser.cpp" |
| 1287 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumber_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 1288 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST ic = ANTLR_USE_NAMESPACE(antlr)nullAST; |
| 1289 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST fc = ANTLR_USE_NAMESPACE(antlr)nullAST; |
| 1290 |
> |
|
| 1291 |
> |
try { // for error handling |
| 1292 |
> |
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 1293 |
> |
_t = ASTNULL; |
| 1294 |
> |
switch ( _t->getType()) { |
| 1295 |
> |
case NUM_INT: |
| 1296 |
> |
case NUM_LONG: |
| 1297 |
> |
{ |
| 1298 |
> |
ic = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 1299 |
> |
intConst(_t); |
| 1300 |
> |
_t = _retTree; |
| 1301 |
> |
#line 356 "MDTreeParser.g" |
| 1302 |
> |
dval = lexi_cast<RealType>(ic->getText()); |
| 1303 |
> |
#line 1304 "MDTreeParser.cpp" |
| 1304 |
|
break; |
| 1305 |
|
} |
| 1306 |
+ |
case NUM_FLOAT: |
| 1307 |
+ |
case NUM_DOUBLE: |
| 1308 |
+ |
{ |
| 1309 |
+ |
fc = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 1310 |
+ |
floatConst(_t); |
| 1311 |
+ |
_t = _retTree; |
| 1312 |
+ |
#line 357 "MDTreeParser.g" |
| 1313 |
+ |
dval = lexi_cast<RealType>(fc->getText()); |
| 1314 |
+ |
#line 1315 "MDTreeParser.cpp" |
| 1315 |
+ |
break; |
| 1316 |
+ |
} |
| 1317 |
|
default: |
| 1318 |
|
{ |
| 1319 |
|
throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); |
| 1326 |
|
_t = _t->getNextSibling(); |
| 1327 |
|
} |
| 1328 |
|
_retTree = _t; |
| 1329 |
+ |
return dval; |
| 1330 |
|
} |
| 1331 |
|
|
| 1332 |
|
void MDTreeParser::bondstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
| 1333 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST bondstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 1334 |
< |
#line 153 "MDTreeParser.g" |
| 1334 |
> |
#line 157 "MDTreeParser.g" |
| 1335 |
|
|
| 1336 |
|
vector<int> ivec; |
| 1337 |
+ |
RealType rval; |
| 1338 |
+ |
vector<RealType> dvec; |
| 1339 |
|
BondStamp* currBondStamp = static_cast<BondStamp*>(blockStack.top()); |
| 1340 |
|
|
| 1341 |
< |
#line 1274 "MDTreeParser.cpp" |
| 1341 |
> |
#line 1342 "MDTreeParser.cpp" |
| 1342 |
|
|
| 1343 |
|
try { // for error handling |
| 1344 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 1352 |
|
} |
| 1353 |
|
case MEMBERS: |
| 1354 |
|
{ |
| 1355 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t50 = _t; |
| 1356 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp38_AST_in = _t; |
| 1355 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t51 = _t; |
| 1356 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp39_AST_in = _t; |
| 1357 |
|
match(_t,MEMBERS); |
| 1358 |
|
_t = _t->getFirstChild(); |
| 1359 |
|
ivec=inttuple(_t); |
| 1360 |
|
_t = _retTree; |
| 1361 |
< |
_t = __t50; |
| 1361 |
> |
_t = __t51; |
| 1362 |
|
_t = _t->getNextSibling(); |
| 1363 |
< |
#line 159 "MDTreeParser.g" |
| 1363 |
> |
#line 165 "MDTreeParser.g" |
| 1364 |
|
currBondStamp->setMembers(ivec); |
| 1365 |
< |
#line 1298 "MDTreeParser.cpp" |
| 1365 |
> |
#line 1366 "MDTreeParser.cpp" |
| 1366 |
|
break; |
| 1367 |
|
} |
| 1368 |
+ |
case FIXED: |
| 1369 |
+ |
{ |
| 1370 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t52 = _t; |
| 1371 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp40_AST_in = _t; |
| 1372 |
+ |
match(_t,FIXED); |
| 1373 |
+ |
_t = _t->getFirstChild(); |
| 1374 |
+ |
rval=doubleNumber(_t); |
| 1375 |
+ |
_t = _retTree; |
| 1376 |
+ |
_t = __t52; |
| 1377 |
+ |
_t = _t->getNextSibling(); |
| 1378 |
+ |
#line 166 "MDTreeParser.g" |
| 1379 |
+ |
currBondStamp->overrideType("Fixed", rval); |
| 1380 |
+ |
#line 1381 "MDTreeParser.cpp" |
| 1381 |
+ |
break; |
| 1382 |
+ |
} |
| 1383 |
+ |
case HARMONIC: |
| 1384 |
+ |
{ |
| 1385 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t53 = _t; |
| 1386 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp41_AST_in = _t; |
| 1387 |
+ |
match(_t,HARMONIC); |
| 1388 |
+ |
_t = _t->getFirstChild(); |
| 1389 |
+ |
dvec=doubleNumberTuple(_t); |
| 1390 |
+ |
_t = _retTree; |
| 1391 |
+ |
_t = __t53; |
| 1392 |
+ |
_t = _t->getNextSibling(); |
| 1393 |
+ |
#line 167 "MDTreeParser.g" |
| 1394 |
+ |
currBondStamp->overrideType("Harmonic", dvec); |
| 1395 |
+ |
#line 1396 "MDTreeParser.cpp" |
| 1396 |
+ |
break; |
| 1397 |
+ |
} |
| 1398 |
+ |
case CUBIC: |
| 1399 |
+ |
{ |
| 1400 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t54 = _t; |
| 1401 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp42_AST_in = _t; |
| 1402 |
+ |
match(_t,CUBIC); |
| 1403 |
+ |
_t = _t->getFirstChild(); |
| 1404 |
+ |
dvec=doubleNumberTuple(_t); |
| 1405 |
+ |
_t = _retTree; |
| 1406 |
+ |
_t = __t54; |
| 1407 |
+ |
_t = _t->getNextSibling(); |
| 1408 |
+ |
#line 168 "MDTreeParser.g" |
| 1409 |
+ |
currBondStamp->overrideType("Cubic", dvec); |
| 1410 |
+ |
#line 1411 "MDTreeParser.cpp" |
| 1411 |
+ |
break; |
| 1412 |
+ |
} |
| 1413 |
+ |
case QUARTIC: |
| 1414 |
+ |
{ |
| 1415 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t55 = _t; |
| 1416 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp43_AST_in = _t; |
| 1417 |
+ |
match(_t,QUARTIC); |
| 1418 |
+ |
_t = _t->getFirstChild(); |
| 1419 |
+ |
dvec=doubleNumberTuple(_t); |
| 1420 |
+ |
_t = _retTree; |
| 1421 |
+ |
_t = __t55; |
| 1422 |
+ |
_t = _t->getNextSibling(); |
| 1423 |
+ |
#line 169 "MDTreeParser.g" |
| 1424 |
+ |
currBondStamp->overrideType("Quartic", dvec); |
| 1425 |
+ |
#line 1426 "MDTreeParser.cpp" |
| 1426 |
+ |
break; |
| 1427 |
+ |
} |
| 1428 |
+ |
case POLYNOMIAL: |
| 1429 |
+ |
{ |
| 1430 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t56 = _t; |
| 1431 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp44_AST_in = _t; |
| 1432 |
+ |
match(_t,POLYNOMIAL); |
| 1433 |
+ |
_t = _t->getFirstChild(); |
| 1434 |
+ |
dvec=doubleNumberTuple(_t); |
| 1435 |
+ |
_t = _retTree; |
| 1436 |
+ |
_t = __t56; |
| 1437 |
+ |
_t = _t->getNextSibling(); |
| 1438 |
+ |
#line 170 "MDTreeParser.g" |
| 1439 |
+ |
currBondStamp->overrideType("Polynomial", dvec); |
| 1440 |
+ |
#line 1441 "MDTreeParser.cpp" |
| 1441 |
+ |
break; |
| 1442 |
+ |
} |
| 1443 |
+ |
case MORSE: |
| 1444 |
+ |
{ |
| 1445 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t57 = _t; |
| 1446 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp45_AST_in = _t; |
| 1447 |
+ |
match(_t,MORSE); |
| 1448 |
+ |
_t = _t->getFirstChild(); |
| 1449 |
+ |
dvec=doubleNumberTuple(_t); |
| 1450 |
+ |
_t = _retTree; |
| 1451 |
+ |
_t = __t57; |
| 1452 |
+ |
_t = _t->getNextSibling(); |
| 1453 |
+ |
#line 171 "MDTreeParser.g" |
| 1454 |
+ |
currBondStamp->overrideType("Morse", dvec); |
| 1455 |
+ |
#line 1456 "MDTreeParser.cpp" |
| 1456 |
+ |
break; |
| 1457 |
+ |
} |
| 1458 |
|
default: |
| 1459 |
|
{ |
| 1460 |
|
throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); |
| 1470 |
|
} |
| 1471 |
|
|
| 1472 |
|
vector<int> MDTreeParser::inttuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
| 1473 |
< |
#line 304 "MDTreeParser.g" |
| 1473 |
> |
#line 341 "MDTreeParser.g" |
| 1474 |
|
vector<int> ivec; |
| 1475 |
< |
#line 1318 "MDTreeParser.cpp" |
| 1475 |
> |
#line 1476 "MDTreeParser.cpp" |
| 1476 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST inttuple_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 1477 |
< |
#line 304 "MDTreeParser.g" |
| 1477 |
> |
#line 341 "MDTreeParser.g" |
| 1478 |
|
|
| 1479 |
|
int ival; |
| 1480 |
|
|
| 1481 |
< |
#line 1324 "MDTreeParser.cpp" |
| 1481 |
> |
#line 1482 "MDTreeParser.cpp" |
| 1482 |
|
|
| 1483 |
|
try { // for error handling |
| 1484 |
|
{ // ( ... )+ |
| 1485 |
< |
int _cnt98=0; |
| 1485 |
> |
int _cnt125=0; |
| 1486 |
|
for (;;) { |
| 1487 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 1488 |
|
_t = ASTNULL; |
| 1489 |
|
if ((_t->getType() == NUM_INT || _t->getType() == NUM_LONG)) { |
| 1490 |
|
ival=intConst(_t); |
| 1491 |
|
_t = _retTree; |
| 1492 |
< |
#line 308 "MDTreeParser.g" |
| 1492 |
> |
#line 345 "MDTreeParser.g" |
| 1493 |
|
ivec.push_back(ival); |
| 1494 |
< |
#line 1337 "MDTreeParser.cpp" |
| 1494 |
> |
#line 1495 "MDTreeParser.cpp" |
| 1495 |
|
} |
| 1496 |
|
else { |
| 1497 |
< |
if ( _cnt98>=1 ) { goto _loop98; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} |
| 1497 |
> |
if ( _cnt125>=1 ) { goto _loop125; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} |
| 1498 |
|
} |
| 1499 |
|
|
| 1500 |
< |
_cnt98++; |
| 1500 |
> |
_cnt125++; |
| 1501 |
|
} |
| 1502 |
< |
_loop98:; |
| 1502 |
> |
_loop125:; |
| 1503 |
|
} // ( ... )+ |
| 1504 |
|
} |
| 1505 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
| 1513 |
|
|
| 1514 |
|
void MDTreeParser::bendstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
| 1515 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST bendstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 1516 |
< |
#line 172 "MDTreeParser.g" |
| 1516 |
> |
#line 184 "MDTreeParser.g" |
| 1517 |
|
|
| 1518 |
|
vector<int> ivec; |
| 1519 |
+ |
vector<RealType> dvec; |
| 1520 |
|
BendStamp* currBendStamp = static_cast<BendStamp*>(blockStack.top()); |
| 1521 |
|
|
| 1522 |
< |
#line 1364 "MDTreeParser.cpp" |
| 1522 |
> |
#line 1523 "MDTreeParser.cpp" |
| 1523 |
|
|
| 1524 |
|
try { // for error handling |
| 1525 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 1533 |
|
} |
| 1534 |
|
case MEMBERS: |
| 1535 |
|
{ |
| 1536 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t56 = _t; |
| 1537 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp39_AST_in = _t; |
| 1536 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t63 = _t; |
| 1537 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp46_AST_in = _t; |
| 1538 |
|
match(_t,MEMBERS); |
| 1539 |
|
_t = _t->getFirstChild(); |
| 1540 |
|
ivec=inttuple(_t); |
| 1541 |
|
_t = _retTree; |
| 1542 |
< |
_t = __t56; |
| 1542 |
> |
_t = __t63; |
| 1543 |
|
_t = _t->getNextSibling(); |
| 1544 |
< |
#line 178 "MDTreeParser.g" |
| 1544 |
> |
#line 191 "MDTreeParser.g" |
| 1545 |
|
currBendStamp->setMembers(ivec); |
| 1546 |
< |
#line 1388 "MDTreeParser.cpp" |
| 1546 |
> |
#line 1547 "MDTreeParser.cpp" |
| 1547 |
|
break; |
| 1548 |
|
} |
| 1549 |
+ |
case HARMONIC: |
| 1550 |
+ |
{ |
| 1551 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t64 = _t; |
| 1552 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp47_AST_in = _t; |
| 1553 |
+ |
match(_t,HARMONIC); |
| 1554 |
+ |
_t = _t->getFirstChild(); |
| 1555 |
+ |
dvec=doubleNumberTuple(_t); |
| 1556 |
+ |
_t = _retTree; |
| 1557 |
+ |
_t = __t64; |
| 1558 |
+ |
_t = _t->getNextSibling(); |
| 1559 |
+ |
#line 192 "MDTreeParser.g" |
| 1560 |
+ |
currBendStamp->overrideType("Harmonic", dvec); |
| 1561 |
+ |
#line 1562 "MDTreeParser.cpp" |
| 1562 |
+ |
break; |
| 1563 |
+ |
} |
| 1564 |
+ |
case GHOSTBEND: |
| 1565 |
+ |
{ |
| 1566 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t65 = _t; |
| 1567 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp48_AST_in = _t; |
| 1568 |
+ |
match(_t,GHOSTBEND); |
| 1569 |
+ |
_t = _t->getFirstChild(); |
| 1570 |
+ |
dvec=doubleNumberTuple(_t); |
| 1571 |
+ |
_t = _retTree; |
| 1572 |
+ |
_t = __t65; |
| 1573 |
+ |
_t = _t->getNextSibling(); |
| 1574 |
+ |
#line 193 "MDTreeParser.g" |
| 1575 |
+ |
currBendStamp->overrideType("GhostBend", dvec); |
| 1576 |
+ |
#line 1577 "MDTreeParser.cpp" |
| 1577 |
+ |
break; |
| 1578 |
+ |
} |
| 1579 |
+ |
case UREYBRADLEY: |
| 1580 |
+ |
{ |
| 1581 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t66 = _t; |
| 1582 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp49_AST_in = _t; |
| 1583 |
+ |
match(_t,UREYBRADLEY); |
| 1584 |
+ |
_t = _t->getFirstChild(); |
| 1585 |
+ |
dvec=doubleNumberTuple(_t); |
| 1586 |
+ |
_t = _retTree; |
| 1587 |
+ |
_t = __t66; |
| 1588 |
+ |
_t = _t->getNextSibling(); |
| 1589 |
+ |
#line 194 "MDTreeParser.g" |
| 1590 |
+ |
currBendStamp->overrideType("UreyBradley", dvec); |
| 1591 |
+ |
#line 1592 "MDTreeParser.cpp" |
| 1592 |
+ |
break; |
| 1593 |
+ |
} |
| 1594 |
+ |
case CUBIC: |
| 1595 |
+ |
{ |
| 1596 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t67 = _t; |
| 1597 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp50_AST_in = _t; |
| 1598 |
+ |
match(_t,CUBIC); |
| 1599 |
+ |
_t = _t->getFirstChild(); |
| 1600 |
+ |
dvec=doubleNumberTuple(_t); |
| 1601 |
+ |
_t = _retTree; |
| 1602 |
+ |
_t = __t67; |
| 1603 |
+ |
_t = _t->getNextSibling(); |
| 1604 |
+ |
#line 195 "MDTreeParser.g" |
| 1605 |
+ |
currBendStamp->overrideType("Cubic", dvec); |
| 1606 |
+ |
#line 1607 "MDTreeParser.cpp" |
| 1607 |
+ |
break; |
| 1608 |
+ |
} |
| 1609 |
+ |
case QUARTIC: |
| 1610 |
+ |
{ |
| 1611 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t68 = _t; |
| 1612 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp51_AST_in = _t; |
| 1613 |
+ |
match(_t,QUARTIC); |
| 1614 |
+ |
_t = _t->getFirstChild(); |
| 1615 |
+ |
dvec=doubleNumberTuple(_t); |
| 1616 |
+ |
_t = _retTree; |
| 1617 |
+ |
_t = __t68; |
| 1618 |
+ |
_t = _t->getNextSibling(); |
| 1619 |
+ |
#line 196 "MDTreeParser.g" |
| 1620 |
+ |
currBendStamp->overrideType("Quartic", dvec); |
| 1621 |
+ |
#line 1622 "MDTreeParser.cpp" |
| 1622 |
+ |
break; |
| 1623 |
+ |
} |
| 1624 |
+ |
case POLYNOMIAL: |
| 1625 |
+ |
{ |
| 1626 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t69 = _t; |
| 1627 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp52_AST_in = _t; |
| 1628 |
+ |
match(_t,POLYNOMIAL); |
| 1629 |
+ |
_t = _t->getFirstChild(); |
| 1630 |
+ |
dvec=doubleNumberTuple(_t); |
| 1631 |
+ |
_t = _retTree; |
| 1632 |
+ |
_t = __t69; |
| 1633 |
+ |
_t = _t->getNextSibling(); |
| 1634 |
+ |
#line 197 "MDTreeParser.g" |
| 1635 |
+ |
currBendStamp->overrideType("Polynomial", dvec); |
| 1636 |
+ |
#line 1637 "MDTreeParser.cpp" |
| 1637 |
+ |
break; |
| 1638 |
+ |
} |
| 1639 |
+ |
case COSINE: |
| 1640 |
+ |
{ |
| 1641 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t70 = _t; |
| 1642 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp53_AST_in = _t; |
| 1643 |
+ |
match(_t,COSINE); |
| 1644 |
+ |
_t = _t->getFirstChild(); |
| 1645 |
+ |
dvec=doubleNumberTuple(_t); |
| 1646 |
+ |
_t = _retTree; |
| 1647 |
+ |
_t = __t70; |
| 1648 |
+ |
_t = _t->getNextSibling(); |
| 1649 |
+ |
#line 198 "MDTreeParser.g" |
| 1650 |
+ |
currBendStamp->overrideType("Cosine", dvec); |
| 1651 |
+ |
#line 1652 "MDTreeParser.cpp" |
| 1652 |
+ |
break; |
| 1653 |
+ |
} |
| 1654 |
|
default: |
| 1655 |
|
{ |
| 1656 |
|
throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); |
| 1667 |
|
|
| 1668 |
|
void MDTreeParser::torsionstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
| 1669 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST torsionstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 1670 |
< |
#line 191 "MDTreeParser.g" |
| 1670 |
> |
#line 211 "MDTreeParser.g" |
| 1671 |
|
|
| 1672 |
|
vector<int> ivec; |
| 1673 |
+ |
vector<RealType> dvec; |
| 1674 |
|
TorsionStamp* currTorsionStamp = static_cast<TorsionStamp*>(blockStack.top()); |
| 1675 |
|
|
| 1676 |
< |
#line 1412 "MDTreeParser.cpp" |
| 1676 |
> |
#line 1677 "MDTreeParser.cpp" |
| 1677 |
|
|
| 1678 |
|
try { // for error handling |
| 1679 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 1687 |
|
} |
| 1688 |
|
case MEMBERS: |
| 1689 |
|
{ |
| 1690 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t62 = _t; |
| 1691 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp40_AST_in = _t; |
| 1690 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t76 = _t; |
| 1691 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp54_AST_in = _t; |
| 1692 |
|
match(_t,MEMBERS); |
| 1693 |
|
_t = _t->getFirstChild(); |
| 1694 |
|
ivec=inttuple(_t); |
| 1695 |
|
_t = _retTree; |
| 1696 |
< |
_t = __t62; |
| 1696 |
> |
_t = __t76; |
| 1697 |
|
_t = _t->getNextSibling(); |
| 1698 |
< |
#line 197 "MDTreeParser.g" |
| 1698 |
> |
#line 218 "MDTreeParser.g" |
| 1699 |
|
currTorsionStamp->setMembers(ivec); |
| 1700 |
< |
#line 1436 "MDTreeParser.cpp" |
| 1700 |
> |
#line 1701 "MDTreeParser.cpp" |
| 1701 |
|
break; |
| 1702 |
|
} |
| 1703 |
+ |
case GHOSTTORSION: |
| 1704 |
+ |
{ |
| 1705 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t77 = _t; |
| 1706 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp55_AST_in = _t; |
| 1707 |
+ |
match(_t,GHOSTTORSION); |
| 1708 |
+ |
_t = _t->getFirstChild(); |
| 1709 |
+ |
dvec=doubleNumberTuple(_t); |
| 1710 |
+ |
_t = _retTree; |
| 1711 |
+ |
_t = __t77; |
| 1712 |
+ |
_t = _t->getNextSibling(); |
| 1713 |
+ |
#line 219 "MDTreeParser.g" |
| 1714 |
+ |
currTorsionStamp->overrideType("GhostTorsion", dvec); |
| 1715 |
+ |
#line 1716 "MDTreeParser.cpp" |
| 1716 |
+ |
break; |
| 1717 |
+ |
} |
| 1718 |
+ |
case CUBIC: |
| 1719 |
+ |
{ |
| 1720 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t78 = _t; |
| 1721 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp56_AST_in = _t; |
| 1722 |
+ |
match(_t,CUBIC); |
| 1723 |
+ |
_t = _t->getFirstChild(); |
| 1724 |
+ |
dvec=doubleNumberTuple(_t); |
| 1725 |
+ |
_t = _retTree; |
| 1726 |
+ |
_t = __t78; |
| 1727 |
+ |
_t = _t->getNextSibling(); |
| 1728 |
+ |
#line 220 "MDTreeParser.g" |
| 1729 |
+ |
currTorsionStamp->overrideType("Cubic", dvec); |
| 1730 |
+ |
#line 1731 "MDTreeParser.cpp" |
| 1731 |
+ |
break; |
| 1732 |
+ |
} |
| 1733 |
+ |
case QUARTIC: |
| 1734 |
+ |
{ |
| 1735 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t79 = _t; |
| 1736 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp57_AST_in = _t; |
| 1737 |
+ |
match(_t,QUARTIC); |
| 1738 |
+ |
_t = _t->getFirstChild(); |
| 1739 |
+ |
dvec=doubleNumberTuple(_t); |
| 1740 |
+ |
_t = _retTree; |
| 1741 |
+ |
_t = __t79; |
| 1742 |
+ |
_t = _t->getNextSibling(); |
| 1743 |
+ |
#line 221 "MDTreeParser.g" |
| 1744 |
+ |
currTorsionStamp->overrideType("Quartic", dvec); |
| 1745 |
+ |
#line 1746 "MDTreeParser.cpp" |
| 1746 |
+ |
break; |
| 1747 |
+ |
} |
| 1748 |
+ |
case POLYNOMIAL: |
| 1749 |
+ |
{ |
| 1750 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t80 = _t; |
| 1751 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp58_AST_in = _t; |
| 1752 |
+ |
match(_t,POLYNOMIAL); |
| 1753 |
+ |
_t = _t->getFirstChild(); |
| 1754 |
+ |
dvec=doubleNumberTuple(_t); |
| 1755 |
+ |
_t = _retTree; |
| 1756 |
+ |
_t = __t80; |
| 1757 |
+ |
_t = _t->getNextSibling(); |
| 1758 |
+ |
#line 222 "MDTreeParser.g" |
| 1759 |
+ |
currTorsionStamp->overrideType("Polynomial", dvec); |
| 1760 |
+ |
#line 1761 "MDTreeParser.cpp" |
| 1761 |
+ |
break; |
| 1762 |
+ |
} |
| 1763 |
+ |
case CHARMM: |
| 1764 |
+ |
{ |
| 1765 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t81 = _t; |
| 1766 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp59_AST_in = _t; |
| 1767 |
+ |
match(_t,CHARMM); |
| 1768 |
+ |
_t = _t->getFirstChild(); |
| 1769 |
+ |
dvec=doubleNumberTuple(_t); |
| 1770 |
+ |
_t = _retTree; |
| 1771 |
+ |
_t = __t81; |
| 1772 |
+ |
_t = _t->getNextSibling(); |
| 1773 |
+ |
#line 223 "MDTreeParser.g" |
| 1774 |
+ |
currTorsionStamp->overrideType("Charmm", dvec); |
| 1775 |
+ |
#line 1776 "MDTreeParser.cpp" |
| 1776 |
+ |
break; |
| 1777 |
+ |
} |
| 1778 |
+ |
case OPLS: |
| 1779 |
+ |
{ |
| 1780 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t82 = _t; |
| 1781 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp60_AST_in = _t; |
| 1782 |
+ |
match(_t,OPLS); |
| 1783 |
+ |
_t = _t->getFirstChild(); |
| 1784 |
+ |
dvec=doubleNumberTuple(_t); |
| 1785 |
+ |
_t = _retTree; |
| 1786 |
+ |
_t = __t82; |
| 1787 |
+ |
_t = _t->getNextSibling(); |
| 1788 |
+ |
#line 224 "MDTreeParser.g" |
| 1789 |
+ |
currTorsionStamp->overrideType("Opls", dvec); |
| 1790 |
+ |
#line 1791 "MDTreeParser.cpp" |
| 1791 |
+ |
break; |
| 1792 |
+ |
} |
| 1793 |
+ |
case TRAPPE: |
| 1794 |
+ |
{ |
| 1795 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t83 = _t; |
| 1796 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp61_AST_in = _t; |
| 1797 |
+ |
match(_t,TRAPPE); |
| 1798 |
+ |
_t = _t->getFirstChild(); |
| 1799 |
+ |
dvec=doubleNumberTuple(_t); |
| 1800 |
+ |
_t = _retTree; |
| 1801 |
+ |
_t = __t83; |
| 1802 |
+ |
_t = _t->getNextSibling(); |
| 1803 |
+ |
#line 225 "MDTreeParser.g" |
| 1804 |
+ |
currTorsionStamp->overrideType("Trappe", dvec); |
| 1805 |
+ |
#line 1806 "MDTreeParser.cpp" |
| 1806 |
+ |
break; |
| 1807 |
+ |
} |
| 1808 |
+ |
case HARMONIC: |
| 1809 |
+ |
{ |
| 1810 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t84 = _t; |
| 1811 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp62_AST_in = _t; |
| 1812 |
+ |
match(_t,HARMONIC); |
| 1813 |
+ |
_t = _t->getFirstChild(); |
| 1814 |
+ |
dvec=doubleNumberTuple(_t); |
| 1815 |
+ |
_t = _retTree; |
| 1816 |
+ |
_t = __t84; |
| 1817 |
+ |
_t = _t->getNextSibling(); |
| 1818 |
+ |
#line 226 "MDTreeParser.g" |
| 1819 |
+ |
currTorsionStamp->overrideType("Harmonic", dvec); |
| 1820 |
+ |
#line 1821 "MDTreeParser.cpp" |
| 1821 |
+ |
break; |
| 1822 |
+ |
} |
| 1823 |
|
default: |
| 1824 |
|
{ |
| 1825 |
|
throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); |
| 1836 |
|
|
| 1837 |
|
void MDTreeParser::inversionstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
| 1838 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST inversionstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 1839 |
< |
#line 210 "MDTreeParser.g" |
| 1839 |
> |
#line 240 "MDTreeParser.g" |
| 1840 |
|
|
| 1841 |
|
int icent; |
| 1842 |
|
vector<int> ivec; |
| 1843 |
+ |
vector<RealType> dvec; |
| 1844 |
|
InversionStamp* currInversionStamp = static_cast<InversionStamp*>(blockStack.top()); |
| 1845 |
|
|
| 1846 |
< |
#line 1461 "MDTreeParser.cpp" |
| 1846 |
> |
#line 1847 "MDTreeParser.cpp" |
| 1847 |
|
|
| 1848 |
|
try { // for error handling |
| 1849 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 1857 |
|
} |
| 1858 |
|
case CENTER: |
| 1859 |
|
{ |
| 1860 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t68 = _t; |
| 1861 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp41_AST_in = _t; |
| 1860 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t90 = _t; |
| 1861 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp63_AST_in = _t; |
| 1862 |
|
match(_t,CENTER); |
| 1863 |
|
_t = _t->getFirstChild(); |
| 1864 |
|
icent=intConst(_t); |
| 1865 |
|
_t = _retTree; |
| 1866 |
< |
_t = __t68; |
| 1866 |
> |
_t = __t90; |
| 1867 |
|
_t = _t->getNextSibling(); |
| 1868 |
< |
#line 217 "MDTreeParser.g" |
| 1868 |
> |
#line 248 "MDTreeParser.g" |
| 1869 |
|
currInversionStamp->setCenter(icent); |
| 1870 |
< |
#line 1485 "MDTreeParser.cpp" |
| 1870 |
> |
#line 1871 "MDTreeParser.cpp" |
| 1871 |
|
break; |
| 1872 |
|
} |
| 1873 |
|
case SATELLITES: |
| 1874 |
|
{ |
| 1875 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t69 = _t; |
| 1876 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp42_AST_in = _t; |
| 1875 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t91 = _t; |
| 1876 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp64_AST_in = _t; |
| 1877 |
|
match(_t,SATELLITES); |
| 1878 |
|
_t = _t->getFirstChild(); |
| 1879 |
|
ivec=inttuple(_t); |
| 1880 |
|
_t = _retTree; |
| 1881 |
< |
_t = __t69; |
| 1881 |
> |
_t = __t91; |
| 1882 |
|
_t = _t->getNextSibling(); |
| 1883 |
< |
#line 218 "MDTreeParser.g" |
| 1883 |
> |
#line 249 "MDTreeParser.g" |
| 1884 |
|
currInversionStamp->setSatellites(ivec); |
| 1885 |
< |
#line 1500 "MDTreeParser.cpp" |
| 1885 |
> |
#line 1886 "MDTreeParser.cpp" |
| 1886 |
> |
break; |
| 1887 |
> |
} |
| 1888 |
> |
case AMBERIMPROPER: |
| 1889 |
> |
{ |
| 1890 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t92 = _t; |
| 1891 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp65_AST_in = _t; |
| 1892 |
> |
match(_t,AMBERIMPROPER); |
| 1893 |
> |
_t = _t->getFirstChild(); |
| 1894 |
> |
dvec=doubleNumberTuple(_t); |
| 1895 |
> |
_t = _retTree; |
| 1896 |
> |
_t = __t92; |
| 1897 |
> |
_t = _t->getNextSibling(); |
| 1898 |
> |
#line 250 "MDTreeParser.g" |
| 1899 |
> |
currInversionStamp->overrideType("AmberImproper", dvec); |
| 1900 |
> |
#line 1901 "MDTreeParser.cpp" |
| 1901 |
|
break; |
| 1902 |
|
} |
| 1903 |
+ |
case IMPROPERCOSINE: |
| 1904 |
+ |
{ |
| 1905 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t93 = _t; |
| 1906 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp66_AST_in = _t; |
| 1907 |
+ |
match(_t,IMPROPERCOSINE); |
| 1908 |
+ |
_t = _t->getFirstChild(); |
| 1909 |
+ |
dvec=doubleNumberTuple(_t); |
| 1910 |
+ |
_t = _retTree; |
| 1911 |
+ |
_t = __t93; |
| 1912 |
+ |
_t = _t->getNextSibling(); |
| 1913 |
+ |
#line 251 "MDTreeParser.g" |
| 1914 |
+ |
currInversionStamp->overrideType("ImproperCosine", dvec); |
| 1915 |
+ |
#line 1916 "MDTreeParser.cpp" |
| 1916 |
+ |
break; |
| 1917 |
+ |
} |
| 1918 |
+ |
case HARMONIC: |
| 1919 |
+ |
{ |
| 1920 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t94 = _t; |
| 1921 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp67_AST_in = _t; |
| 1922 |
+ |
match(_t,HARMONIC); |
| 1923 |
+ |
_t = _t->getFirstChild(); |
| 1924 |
+ |
dvec=doubleNumberTuple(_t); |
| 1925 |
+ |
_t = _retTree; |
| 1926 |
+ |
_t = __t94; |
| 1927 |
+ |
_t = _t->getNextSibling(); |
| 1928 |
+ |
#line 252 "MDTreeParser.g" |
| 1929 |
+ |
currInversionStamp->overrideType("Harmonic", dvec); |
| 1930 |
+ |
#line 1931 "MDTreeParser.cpp" |
| 1931 |
+ |
break; |
| 1932 |
+ |
} |
| 1933 |
+ |
case CENTRALATOMHEIGHT: |
| 1934 |
+ |
{ |
| 1935 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t95 = _t; |
| 1936 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp68_AST_in = _t; |
| 1937 |
+ |
match(_t,CENTRALATOMHEIGHT); |
| 1938 |
+ |
_t = _t->getFirstChild(); |
| 1939 |
+ |
dvec=doubleNumberTuple(_t); |
| 1940 |
+ |
_t = _retTree; |
| 1941 |
+ |
_t = __t95; |
| 1942 |
+ |
_t = _t->getNextSibling(); |
| 1943 |
+ |
#line 253 "MDTreeParser.g" |
| 1944 |
+ |
currInversionStamp->overrideType("CentralAtomHeight", dvec); |
| 1945 |
+ |
#line 1946 "MDTreeParser.cpp" |
| 1946 |
+ |
break; |
| 1947 |
+ |
} |
| 1948 |
+ |
case DREIDING: |
| 1949 |
+ |
{ |
| 1950 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t96 = _t; |
| 1951 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp69_AST_in = _t; |
| 1952 |
+ |
match(_t,DREIDING); |
| 1953 |
+ |
_t = _t->getFirstChild(); |
| 1954 |
+ |
dvec=doubleNumberTuple(_t); |
| 1955 |
+ |
_t = _retTree; |
| 1956 |
+ |
_t = __t96; |
| 1957 |
+ |
_t = _t->getNextSibling(); |
| 1958 |
+ |
#line 254 "MDTreeParser.g" |
| 1959 |
+ |
currInversionStamp->overrideType("Dreiding", dvec); |
| 1960 |
+ |
#line 1961 "MDTreeParser.cpp" |
| 1961 |
+ |
break; |
| 1962 |
+ |
} |
| 1963 |
|
default: |
| 1964 |
|
{ |
| 1965 |
|
throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); |
| 1976 |
|
|
| 1977 |
|
void MDTreeParser::rigidbodystatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
| 1978 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodystatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 1979 |
< |
#line 235 "MDTreeParser.g" |
| 1979 |
> |
#line 272 "MDTreeParser.g" |
| 1980 |
|
|
| 1981 |
|
vector<int> ivec; |
| 1982 |
|
RigidBodyStamp* currRigidBodyStamp = static_cast<RigidBodyStamp*>(blockStack.top()); |
| 1983 |
|
|
| 1984 |
< |
#line 1524 "MDTreeParser.cpp" |
| 1984 |
> |
#line 1985 "MDTreeParser.cpp" |
| 1985 |
|
|
| 1986 |
|
try { // for error handling |
| 1987 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 1995 |
|
} |
| 1996 |
|
case MEMBERS: |
| 1997 |
|
{ |
| 1998 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t75 = _t; |
| 1999 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp43_AST_in = _t; |
| 1998 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t102 = _t; |
| 1999 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp70_AST_in = _t; |
| 2000 |
|
match(_t,MEMBERS); |
| 2001 |
|
_t = _t->getFirstChild(); |
| 2002 |
|
ivec=inttuple(_t); |
| 2003 |
|
_t = _retTree; |
| 2004 |
< |
_t = __t75; |
| 2004 |
> |
_t = __t102; |
| 2005 |
|
_t = _t->getNextSibling(); |
| 2006 |
< |
#line 241 "MDTreeParser.g" |
| 2006 |
> |
#line 278 "MDTreeParser.g" |
| 2007 |
|
currRigidBodyStamp->setMembers(ivec); |
| 2008 |
< |
#line 1548 "MDTreeParser.cpp" |
| 2008 |
> |
#line 2009 "MDTreeParser.cpp" |
| 2009 |
|
break; |
| 2010 |
|
} |
| 2011 |
|
default: |
| 2024 |
|
|
| 2025 |
|
void MDTreeParser::cutoffgroupstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
| 2026 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 2027 |
< |
#line 254 "MDTreeParser.g" |
| 2027 |
> |
#line 291 "MDTreeParser.g" |
| 2028 |
|
|
| 2029 |
|
vector<int> ivec; |
| 2030 |
|
CutoffGroupStamp* currCutoffGroupStamp = static_cast<CutoffGroupStamp*>(blockStack.top()); |
| 2031 |
|
|
| 2032 |
< |
#line 1572 "MDTreeParser.cpp" |
| 2032 |
> |
#line 2033 "MDTreeParser.cpp" |
| 2033 |
|
|
| 2034 |
|
try { // for error handling |
| 2035 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 2043 |
|
} |
| 2044 |
|
case MEMBERS: |
| 2045 |
|
{ |
| 2046 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t81 = _t; |
| 2047 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp44_AST_in = _t; |
| 2046 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t108 = _t; |
| 2047 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp71_AST_in = _t; |
| 2048 |
|
match(_t,MEMBERS); |
| 2049 |
|
_t = _t->getFirstChild(); |
| 2050 |
|
ivec=inttuple(_t); |
| 2051 |
|
_t = _retTree; |
| 2052 |
< |
_t = __t81; |
| 2052 |
> |
_t = __t108; |
| 2053 |
|
_t = _t->getNextSibling(); |
| 2054 |
< |
#line 260 "MDTreeParser.g" |
| 2054 |
> |
#line 297 "MDTreeParser.g" |
| 2055 |
|
currCutoffGroupStamp->setMembers(ivec); |
| 2056 |
< |
#line 1596 "MDTreeParser.cpp" |
| 2056 |
> |
#line 2057 "MDTreeParser.cpp" |
| 2057 |
|
break; |
| 2058 |
|
} |
| 2059 |
|
default: |
| 2087 |
|
|
| 2088 |
|
void MDTreeParser::constraintstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
| 2089 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST constraintstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 2090 |
< |
#line 286 "MDTreeParser.g" |
| 2090 |
> |
#line 323 "MDTreeParser.g" |
| 2091 |
|
|
| 2092 |
|
vector<int> ivec; |
| 2093 |
|
ConstraintStamp* currConstraintStamp = static_cast<ConstraintStamp*>(blockStack.top()); |
| 2094 |
|
|
| 2095 |
< |
#line 1635 "MDTreeParser.cpp" |
| 2095 |
> |
#line 2096 "MDTreeParser.cpp" |
| 2096 |
|
|
| 2097 |
|
try { // for error handling |
| 2098 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 2106 |
|
} |
| 2107 |
|
case MEMBERS: |
| 2108 |
|
{ |
| 2109 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t92 = _t; |
| 2110 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp45_AST_in = _t; |
| 2109 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t119 = _t; |
| 2110 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp72_AST_in = _t; |
| 2111 |
|
match(_t,MEMBERS); |
| 2112 |
|
_t = _t->getFirstChild(); |
| 2113 |
|
ivec=inttuple(_t); |
| 2114 |
|
_t = _retTree; |
| 2115 |
< |
_t = __t92; |
| 2115 |
> |
_t = __t119; |
| 2116 |
|
_t = _t->getNextSibling(); |
| 2117 |
< |
#line 292 "MDTreeParser.g" |
| 2117 |
> |
#line 329 "MDTreeParser.g" |
| 2118 |
|
currConstraintStamp->setMembers(ivec); |
| 2119 |
< |
#line 1659 "MDTreeParser.cpp" |
| 2119 |
> |
#line 2120 "MDTreeParser.cpp" |
| 2120 |
|
break; |
| 2121 |
|
} |
| 2122 |
|
default: |
| 2133 |
|
_retTree = _t; |
| 2134 |
|
} |
| 2135 |
|
|
| 1675 |
– |
RealType MDTreeParser::doubleNumber(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
| 1676 |
– |
#line 318 "MDTreeParser.g" |
| 1677 |
– |
RealType dval; |
| 1678 |
– |
#line 1679 "MDTreeParser.cpp" |
| 1679 |
– |
ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumber_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 1680 |
– |
ANTLR_USE_NAMESPACE(antlr)RefAST ic = ANTLR_USE_NAMESPACE(antlr)nullAST; |
| 1681 |
– |
ANTLR_USE_NAMESPACE(antlr)RefAST fc = ANTLR_USE_NAMESPACE(antlr)nullAST; |
| 1682 |
– |
|
| 1683 |
– |
try { // for error handling |
| 1684 |
– |
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 1685 |
– |
_t = ASTNULL; |
| 1686 |
– |
switch ( _t->getType()) { |
| 1687 |
– |
case NUM_INT: |
| 1688 |
– |
case NUM_LONG: |
| 1689 |
– |
{ |
| 1690 |
– |
ic = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 1691 |
– |
intConst(_t); |
| 1692 |
– |
_t = _retTree; |
| 1693 |
– |
#line 319 "MDTreeParser.g" |
| 1694 |
– |
dval = lexi_cast<RealType>(ic->getText()); |
| 1695 |
– |
#line 1696 "MDTreeParser.cpp" |
| 1696 |
– |
break; |
| 1697 |
– |
} |
| 1698 |
– |
case NUM_FLOAT: |
| 1699 |
– |
case NUM_DOUBLE: |
| 1700 |
– |
{ |
| 1701 |
– |
fc = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
| 1702 |
– |
floatConst(_t); |
| 1703 |
– |
_t = _retTree; |
| 1704 |
– |
#line 320 "MDTreeParser.g" |
| 1705 |
– |
dval = lexi_cast<RealType>(fc->getText()); |
| 1706 |
– |
#line 1707 "MDTreeParser.cpp" |
| 1707 |
– |
break; |
| 1708 |
– |
} |
| 1709 |
– |
default: |
| 1710 |
– |
{ |
| 1711 |
– |
throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); |
| 1712 |
– |
} |
| 1713 |
– |
} |
| 1714 |
– |
} |
| 1715 |
– |
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
| 1716 |
– |
reportError(ex); |
| 1717 |
– |
if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) |
| 1718 |
– |
_t = _t->getNextSibling(); |
| 1719 |
– |
} |
| 1720 |
– |
_retTree = _t; |
| 1721 |
– |
return dval; |
| 1722 |
– |
} |
| 1723 |
– |
|
| 2136 |
|
void MDTreeParser::initializeASTFactory( ANTLR_USE_NAMESPACE(antlr)ASTFactory& ) |
| 2137 |
|
{ |
| 2138 |
|
} |
| 2163 |
|
"\"flucQ\"", |
| 2164 |
|
"\"RNEMD\"", |
| 2165 |
|
"\"minimizer\"", |
| 2166 |
+ |
"\"Fixed\"", |
| 2167 |
+ |
"\"Harmonic\"", |
| 2168 |
+ |
"\"Cubic\"", |
| 2169 |
+ |
"\"Quartic\"", |
| 2170 |
+ |
"\"Polynomial\"", |
| 2171 |
+ |
"\"Morse\"", |
| 2172 |
+ |
"\"GhostBend\"", |
| 2173 |
+ |
"\"UreyBradley\"", |
| 2174 |
+ |
"\"Cosine\"", |
| 2175 |
+ |
"\"GhostTorsion\"", |
| 2176 |
+ |
"\"Charmm\"", |
| 2177 |
+ |
"\"Opls\"", |
| 2178 |
+ |
"\"Trappe\"", |
| 2179 |
+ |
"\"AmberImproper\"", |
| 2180 |
+ |
"\"ImproperCosine\"", |
| 2181 |
+ |
"\"CentralAtomHeight\"", |
| 2182 |
+ |
"\"Dreiding\"", |
| 2183 |
+ |
"\"charge\"", |
| 2184 |
|
"ENDBLOCK", |
| 2185 |
|
"ID", |
| 2186 |
|
"ASSIGNEQUAL", |
| 2218 |
|
0 |
| 2219 |
|
}; |
| 2220 |
|
|
| 2221 |
< |
const unsigned long MDTreeParser::_tokenSet_0_data_[] = { 327155952UL, 0UL, 0UL, 0UL }; |
| 2221 |
> |
const unsigned long MDTreeParser::_tokenSet_0_data_[] = { 58720496UL, 16384UL, 0UL, 0UL }; |
| 2222 |
|
// "component" "molecule" "zconstraint" "restraint" "flucQ" "RNEMD" "minimizer" |
| 2223 |
|
// ASSIGNEQUAL |
| 2224 |
|
const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_0(_tokenSet_0_data_,4); |
| 2225 |
< |
const unsigned long MDTreeParser::_tokenSet_1_data_[] = { 268631808UL, 0UL, 0UL, 0UL }; |
| 2225 |
> |
const unsigned long MDTreeParser::_tokenSet_1_data_[] = { 196352UL, 16384UL, 0UL, 0UL }; |
| 2226 |
|
// "atom" "bond" "bend" "torsion" "inversion" "rigidBody" "cutoffGroup" |
| 2227 |
|
// "constraint" "fragment" ASSIGNEQUAL |
| 2228 |
|
const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_1(_tokenSet_1_data_,4); |
| 2229 |
+ |
const unsigned long MDTreeParser::_tokenSet_2_data_[] = { 6291456UL, 18432UL, 0UL, 0UL }; |
| 2230 |
+ |
// "position" "orientation" "charge" ASSIGNEQUAL |
| 2231 |
+ |
const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_2(_tokenSet_2_data_,4); |
| 2232 |
+ |
const unsigned long MDTreeParser::_tokenSet_3_data_[] = { 4228120576UL, 16384UL, 0UL, 0UL }; |
| 2233 |
+ |
// "members" "Fixed" "Harmonic" "Cubic" "Quartic" "Polynomial" "Morse" |
| 2234 |
+ |
// ASSIGNEQUAL |
| 2235 |
+ |
const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_3(_tokenSet_3_data_,4); |
| 2236 |
+ |
const unsigned long MDTreeParser::_tokenSet_4_data_[] = { 2013528064UL, 16391UL, 0UL, 0UL }; |
| 2237 |
+ |
// "members" "Harmonic" "Cubic" "Quartic" "Polynomial" "GhostBend" "UreyBradley" |
| 2238 |
+ |
// "Cosine" ASSIGNEQUAL |
| 2239 |
+ |
const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_4(_tokenSet_4_data_,4); |
| 2240 |
+ |
const unsigned long MDTreeParser::_tokenSet_5_data_[] = { 2013528064UL, 16504UL, 0UL, 0UL }; |
| 2241 |
+ |
// "members" "Harmonic" "Cubic" "Quartic" "Polynomial" "GhostTorsion" "Charmm" |
| 2242 |
+ |
// "Opls" "Trappe" ASSIGNEQUAL |
| 2243 |
+ |
const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_5(_tokenSet_5_data_,4); |
| 2244 |
+ |
const unsigned long MDTreeParser::_tokenSet_6_data_[] = { 135790592UL, 18304UL, 0UL, 0UL }; |
| 2245 |
+ |
// "center" "satellites" "Harmonic" "AmberImproper" "ImproperCosine" "CentralAtomHeight" |
| 2246 |
+ |
// "Dreiding" ASSIGNEQUAL |
| 2247 |
+ |
const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_6(_tokenSet_6_data_,4); |
| 2248 |
|
|
| 2249 |
|
|