| 1 | tim | 746 | /********************************************************************** | 
| 2 |  |  | Copyright (C) 2000 by OpenEye Scientific Software, Inc. | 
| 3 |  |  | Some portions Copyright (C) 2001-2005 by Geoffrey R. Hutchison | 
| 4 |  |  | Some portions Copyright (C) 2004 by Chris Morley | 
| 5 |  |  |  | 
| 6 |  |  | This program is free software; you can redistribute it and/or modify | 
| 7 |  |  | it under the terms of the GNU General Public License as published by | 
| 8 |  |  | the Free Software Foundation version 2 of the License. | 
| 9 |  |  |  | 
| 10 |  |  | This program is distributed in the hope that it will be useful, | 
| 11 |  |  | but WITHOUT ANY WARRANTY; without even the implied warranty of | 
| 12 |  |  | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the | 
| 13 |  |  | GNU General Public License for more details. | 
| 14 |  |  | ***********************************************************************/ | 
| 15 |  |  | #ifndef OB_AMBERFORMAT_HPP | 
| 16 |  |  | #define OB_AMBERFORMAT_HPP | 
| 17 |  |  |  | 
| 18 |  |  | #include "mol.hpp" | 
| 19 |  |  | #include "obconversion.hpp" | 
| 20 |  |  | #include "obmolecformat.hpp" | 
| 21 |  |  |  | 
| 22 |  |  | using namespace std; | 
| 23 |  |  | namespace OpenBabel | 
| 24 |  |  | { | 
| 25 |  |  |  | 
| 26 |  |  | class AmberPrepFormat : public OBMoleculeFormat | 
| 27 |  |  | { | 
| 28 |  |  | public: | 
| 29 |  |  | //Register this format type ID | 
| 30 |  |  | AmberPrepFormat() | 
| 31 |  |  | { | 
| 32 |  |  | OBConversion::RegisterFormat("prep",this); | 
| 33 |  |  | } | 
| 34 |  |  |  | 
| 35 |  |  | virtual const char* Description() //required | 
| 36 |  |  | { | 
| 37 |  |  | return | 
| 38 |  |  | "Amber Prep format\n \ | 
| 39 |  |  | Read Options e.g. -as\n\ | 
| 40 |  |  | s  Output single bonds only\n\ | 
| 41 |  |  | b  Disable bonding entirely\n\n"; | 
| 42 |  |  | }; | 
| 43 |  |  |  | 
| 44 |  |  | virtual const char* SpecificationURL() | 
| 45 |  |  | {return "http://www.amber.ucsf.edu/amber/formats.html";}; //optional | 
| 46 |  |  |  | 
| 47 |  |  | //Flags() can return be any the following combined by | or be omitted if none apply | 
| 48 |  |  | // NOTREADABLE  READONEONLY  NOTWRITABLE  WRITEONEONLY | 
| 49 |  |  | virtual unsigned int Flags() | 
| 50 |  |  | { | 
| 51 |  |  | return NOTWRITABLE; | 
| 52 |  |  | }; | 
| 53 |  |  |  | 
| 54 |  |  | //////////////////////////////////////////////////// | 
| 55 |  |  | /// The "API" interface functions | 
| 56 |  |  | virtual bool ReadMolecule(OBBase* pOb, OBConversion* pConv); | 
| 57 |  |  | }; | 
| 58 |  |  |  | 
| 59 |  |  | } | 
| 60 |  |  | #endif |