src/openbabel/oberror.cpp

/**********************************************************************
oberror.cpp - Handle error messages.
 
Copyright (C) 2002 by Stefan Kebekus
Some portions Copyright (C) 2002-2005 by Geoffrey R. Hutchison
 
This file is part of the Open Babel project.
For more information, see <http://openbabel.sourceforge.net/>
 
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation version 2 of the License.
 
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
General Public License for more details.
***********************************************************************/

#include "config.h"

#if HAVE_IOSTREAM
#include <iostream>
#elif HAVE_IOSTREAM_H
#include <iostream.h>
#endif
#include <string>

#include "oberror.hpp"

using namespace std;

namespace OpenBabel
{

  OBMessageHandler obErrorLog;

OBError::OBError( const string &method, 
                  const string &errorMsg, 
                  const string &explanation,
                  const string &possibleCause,
                  const string &suggestedRemedy,
                  const obMessageLevel level) :
  _method(method), _errorMsg(errorMsg), _explanation(explanation),
  _possibleCause(possibleCause), _suggestedRemedy(suggestedRemedy),
  _level(level)
{ }

string OBError::message() const
{
    string tmp = "==============================\n";

    if (_level == obError)
      tmp += "*** Open Babel Error ";
    else if (_level == obWarning)
      tmp += "*** Open Babel Warning ";
    else if (_level == obInfo)
      tmp += "*** Open Babel Information ";
    else if (_level == obAuditMsg)
      tmp += "*** Open Babel Audit Log ";
    else
      tmp += "*** Open Babel Debugging Message ";

    if (_method.length() != 0)
      {
        tmp += " in " + _method + string("\n  ");
      }
    tmp += _errorMsg + "\n";
    if (_explanation.size() != 0)
        tmp += "  " + _explanation + "\n";
    if (_possibleCause.size() != 0)
        tmp += "  Possible reason: " + _possibleCause + "\n";
    if (_suggestedRemedy.size() != 0)
        tmp += "  Suggestion: " + _suggestedRemedy + "\n";
    return tmp;
}


/** \class OBMessageHandler

 OBMessageHandler represents a configurable error system for Open Babel.

A global error log is defined by the Open Babel library for use of
internal code as well as code built on top of Open Babel. This class
allows flexible filtering based on urgency (defined by the
obMessageLevel type), an "audit log" of molecular changes, including
recall using the GetMessagesOfLevel method, etc.

The default is to only log and output errors of priority
obMessageLevel::obError or obMessageLevel::obWarning.

Long-running code may wish to set the size of the in-memory error log
using the StartLogging / StopLogging methods and
SetMaxLogEntries. Otherwise, the error log may easily fill up,
requiring large amounts of memory.

If you wish to divert error output to a different std::ostream (i.e.,
for graphical display, or a file log), use the SetOutputStream method
-- the default goes to the std::clog stream. Furthermore, some older
code uses std::cerr for direct error output, rather than the
ThrowError() methods in this class. To prevent this, you can turn on
"error wrapping" using the StartErrorWrap method -- this behavior is
turned off by default.

To make it easy to use the OBMessageHandler class and error logging
facilities, a global log is defined:

\code
EXTERN OBMessageHandler obErrorLog;
\endcode

Therefore, it is very easy to log errors:

\code
   if (atomIndex < 1 || atomIndex > mol.NumAtoms() )
    obErrorLog.ThrowError(__FUNCTION__, "Requested Atom Out of Range", obDebug);
\endcode

or

\code
     stringstream errorMsg;
     errorMsg << " Could not parse line in type translation table types.txt -- incorect number of columns";
     errorMsg << " found " << vc.size() << " expected " << _ncols << ".";
     obErrorLog.ThrowError(__FUNCTION__, errorMsg.str(), obInfo);
\endcode

The __FUNCTION__ builtin is defined by many compilers (e.g., <a
href="http://gcc.gnu.org/">GCC</a>) but can be defined to an empty
string on some platforms without this compiler extension.

Output from the error log typically looks like:
\code
==============================
*** Open Babel Audit Log  in ReadChemObject
  OpenBabel::Read molecule Protein Data Bank format
==============================
*** Open Babel Information  in ParseConectRecord
  WARNING: Problems reading a PDB file
  Problems reading a CONECT record.
  According to the PDB specification,
  the record should have 70 columns, but OpenBabel found 61 columns.
\endcode

**/

OBMessageHandler::OBMessageHandler() :
  _outputLevel(obWarning), _outputStream(&clog), _logging(true)
{
  //  StartErrorWrap(); // (don't turn on error wrapping by default)
}

OBMessageHandler::~OBMessageHandler()
{ 
  StopErrorWrap();

  // free the internal filter streambuf
  if (_filterStreamBuf != NULL)
    delete _filterStreamBuf;
}
    
void OBMessageHandler::ThrowError(OBError err)
{
  _messageList.push_back(err);
  if (_maxEntries != 0 && _messageList.size() > _maxEntries)
    _messageList.pop_front();
  
  if (_logging && err.GetLevel() <= _outputLevel)
    {
      *_outputStream << err;
    }
}

void OBMessageHandler::ThrowError(const std::string &method, 
                                  const std::string &errorMsg,
                                  obMessageLevel level)
{
  if (errorMsg.length() > 1)
    {
      OBError err(method, errorMsg, "", "", "", level);
      ThrowError(err);
    }
}

std::vector<std::string> OBMessageHandler::GetMessagesOfLevel(const obMessageLevel level)
{
  vector<string> results;
  deque<OBError>::iterator i;
  OBError error;

  for (i = _messageList.begin(); i != _messageList.end(); i++)
    {
      error = (*i);
      if (error.GetLevel() == level)
        results.push_back( error.message() );
    }

  return results;
}

bool OBMessageHandler::StartErrorWrap()
{
  if (_inWrapStreamBuf != NULL)
    return true; // already wrapped cerr  -- don't go into loops!

  _inWrapStreamBuf = cerr.rdbuf();
 
  if (_filterStreamBuf == NULL)
    {
      _filterStreamBuf = new(obLogBuf);
    }

  cerr.rdbuf(_filterStreamBuf);
  return true;
}

bool OBMessageHandler::StopErrorWrap()
{
  if (_inWrapStreamBuf == NULL)
    return true; // never wrapped cerr

  // don't free the filter streambuf yet -- we might start wrapping later
  // it's freed in the dtor

  cerr.rdbuf(_inWrapStreamBuf);
  return true;
}

} // end namespace OpenBabel

//! \file oberror.cpp
//! \brief Handle error messages, warnings, notices, etc.
//!  Implements OBMessageHandler class.
Revision:	751
Committed:	Thu Nov 17 20:38:45 2005 UTC (19 years, 11 months ago) by gezelter
File size:	6704 byte(s)
Log Message:	Unifying config.h stuff and making sure the OpenBabel codes can find our default (and environment variable) Force Field directories.
#	User	Rev	Content
1	tim	741	/**********************************************************************
2			oberror.cpp - Handle error messages.
3
4			Copyright (C) 2002 by Stefan Kebekus
5			Some portions Copyright (C) 2002-2005 by Geoffrey R. Hutchison
6
7			This file is part of the Open Babel project.
8			For more information, see <http://openbabel.sourceforge.net/>
9
10			This program is free software; you can redistribute it and/or modify
11			it under the terms of the GNU General Public License as published by
12			the Free Software Foundation version 2 of the License.
13
14			This program is distributed in the hope that it will be useful, but
15			WITHOUT ANY WARRANTY; without even the implied warranty of
16			MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17			General Public License for more details.
18			***********************************************************************/
19
20	gezelter	751	#include "config.h"
21	tim	741
22			#if HAVE_IOSTREAM
23			#include <iostream>
24			#elif HAVE_IOSTREAM_H
25			#include <iostream.h>
26			#endif
27			#include <string>
28
29			#include "oberror.hpp"
30
31			using namespace std;
32
33			namespace OpenBabel
34			{
35
36			OBMessageHandler obErrorLog;
37
38			OBError::OBError( const string &method,
39			const string &errorMsg,
40			const string &explanation,
41			const string &possibleCause,
42			const string &suggestedRemedy,
43			const obMessageLevel level) :
44			_method(method), _errorMsg(errorMsg), _explanation(explanation),
45			_possibleCause(possibleCause), _suggestedRemedy(suggestedRemedy),
46			_level(level)
47			{ }
48
49			string OBError::message() const
50			{
51			string tmp = "==============================\n";
52
53			if (_level == obError)
54			tmp += "*** Open Babel Error ";
55			else if (_level == obWarning)
56			tmp += "*** Open Babel Warning ";
57			else if (_level == obInfo)
58			tmp += "*** Open Babel Information ";
59			else if (_level == obAuditMsg)
60			tmp += "*** Open Babel Audit Log ";
61			else
62			tmp += "*** Open Babel Debugging Message ";
63
64			if (_method.length() != 0)
65			{
66			tmp += " in " + _method + string("\n ");
67			}
68			tmp += _errorMsg + "\n";
69			if (_explanation.size() != 0)
70			tmp += " " + _explanation + "\n";
71			if (_possibleCause.size() != 0)
72			tmp += " Possible reason: " + _possibleCause + "\n";
73			if (_suggestedRemedy.size() != 0)
74			tmp += " Suggestion: " + _suggestedRemedy + "\n";
75			return tmp;
76			}
77
78
79			/** \class OBMessageHandler
80
81			OBMessageHandler represents a configurable error system for Open Babel.
82
83			A global error log is defined by the Open Babel library for use of
84			internal code as well as code built on top of Open Babel. This class
85			allows flexible filtering based on urgency (defined by the
86			obMessageLevel type), an "audit log" of molecular changes, including
87			recall using the GetMessagesOfLevel method, etc.
88
89			The default is to only log and output errors of priority
90			obMessageLevel::obError or obMessageLevel::obWarning.
91
92			Long-running code may wish to set the size of the in-memory error log
93			using the StartLogging / StopLogging methods and
94			SetMaxLogEntries. Otherwise, the error log may easily fill up,
95			requiring large amounts of memory.
96
97			If you wish to divert error output to a different std::ostream (i.e.,
98			for graphical display, or a file log), use the SetOutputStream method
99			-- the default goes to the std::clog stream. Furthermore, some older
100			code uses std::cerr for direct error output, rather than the
101			ThrowError() methods in this class. To prevent this, you can turn on
102			"error wrapping" using the StartErrorWrap method -- this behavior is
103			turned off by default.
104
105			To make it easy to use the OBMessageHandler class and error logging
106			facilities, a global log is defined:
107
108			\code
109			EXTERN OBMessageHandler obErrorLog;
110			\endcode
111
112			Therefore, it is very easy to log errors:
113
114			\code
115			if (atomIndex < 1 \|\| atomIndex > mol.NumAtoms() )
116			obErrorLog.ThrowError(__FUNCTION__, "Requested Atom Out of Range", obDebug);
117			\endcode
118
119			or
120
121			\code
122			stringstream errorMsg;
123			errorMsg << " Could not parse line in type translation table types.txt -- incorect number of columns";
124			errorMsg << " found " << vc.size() << " expected " << _ncols << ".";
125			obErrorLog.ThrowError(__FUNCTION__, errorMsg.str(), obInfo);
126			\endcode
127
128			The __FUNCTION__ builtin is defined by many compilers (e.g., <a
129			href="http://gcc.gnu.org/">GCC</a>) but can be defined to an empty
130			string on some platforms without this compiler extension.
131
132			Output from the error log typically looks like:
133			\code
134			==============================
135			*** Open Babel Audit Log in ReadChemObject
136			OpenBabel::Read molecule Protein Data Bank format
137			==============================
138			*** Open Babel Information in ParseConectRecord
139			WARNING: Problems reading a PDB file
140			Problems reading a CONECT record.
141			According to the PDB specification,
142			the record should have 70 columns, but OpenBabel found 61 columns.
143			\endcode
144
145			**/
146
147			OBMessageHandler::OBMessageHandler() :
148			_outputLevel(obWarning), _outputStream(&clog), _logging(true)
149			{
150			// StartErrorWrap(); // (don't turn on error wrapping by default)
151			}
152
153			OBMessageHandler::~OBMessageHandler()
154			{
155			StopErrorWrap();
156
157			// free the internal filter streambuf
158			if (_filterStreamBuf != NULL)
159			delete _filterStreamBuf;
160			}
161
162			void OBMessageHandler::ThrowError(OBError err)
163			{
164			_messageList.push_back(err);
165			if (_maxEntries != 0 && _messageList.size() > _maxEntries)
166			_messageList.pop_front();
167
168			if (_logging && err.GetLevel() <= _outputLevel)
169			{
170			*_outputStream << err;
171			}
172			}
173
174			void OBMessageHandler::ThrowError(const std::string &method,
175			const std::string &errorMsg,
176			obMessageLevel level)
177			{
178			if (errorMsg.length() > 1)
179			{
180			OBError err(method, errorMsg, "", "", "", level);
181			ThrowError(err);
182			}
183			}
184
185			std::vector<std::string> OBMessageHandler::GetMessagesOfLevel(const obMessageLevel level)
186			{
187			vector<string> results;
188			deque<OBError>::iterator i;
189			OBError error;
190
191			for (i = _messageList.begin(); i != _messageList.end(); i++)
192			{
193			error = (*i);
194			if (error.GetLevel() == level)
195			results.push_back( error.message() );
196			}
197
198			return results;
199			}
200
201			bool OBMessageHandler::StartErrorWrap()
202			{
203			if (_inWrapStreamBuf != NULL)
204			return true; // already wrapped cerr -- don't go into loops!
205
206			_inWrapStreamBuf = cerr.rdbuf();
207
208			if (_filterStreamBuf == NULL)
209			{
210			_filterStreamBuf = new(obLogBuf);
211			}
212
213			cerr.rdbuf(_filterStreamBuf);
214			return true;
215			}
216
217			bool OBMessageHandler::StopErrorWrap()
218			{
219			if (_inWrapStreamBuf == NULL)
220			return true; // never wrapped cerr
221
222			// don't free the filter streambuf yet -- we might start wrapping later
223			// it's freed in the dtor
224
225			cerr.rdbuf(_inWrapStreamBuf);
226			return true;
227			}
228
229			} // end namespace OpenBabel
230
231			//! \file oberror.cpp
232			//! \brief Handle error messages, warnings, notices, etc.
233			//! Implements OBMessageHandler class.