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* [4] Vardeman & Gezelter, in progress (2009). |
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*/ |
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< |
#ifndef FORCEDECOMPOSITION_COMMUNICATOR_HPP |
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< |
#define FORCEDECOMPOSITION_COMMUNICATOR_HPP |
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> |
#ifndef PARALLEL_COMMUNICATOR_HPP |
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> |
#define PARALLEL_COMMUNICATOR_HPP |
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#include <config.h> |
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#include <mpi.h> |
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#include "math/SquareMatrix3.hpp" |
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+ |
using namespace std; |
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namespace OpenMD{ |
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#ifdef IS_MPI |
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< |
enum direction { |
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< |
Row = 0, |
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< |
Column = 1 |
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> |
enum communicatorType { |
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> |
Global = 0, |
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> |
Row = 1, |
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> |
Column = 2 |
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}; |
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|
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< |
template<typename T> |
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< |
struct MPITraits |
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< |
{ |
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< |
static const MPI::Datatype datatype; |
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< |
static const int dim; |
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> |
template<class T> |
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> |
class MPITraits { |
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> |
public: |
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> |
static MPI::Datatype Type(); |
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> |
static int Length() { return 1; }; |
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}; |
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|
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< |
template<> const MPI::Datatype MPITraits<int>::datatype = MPI_INT; |
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< |
template<> const int MPITraits<int>::dim = 1; |
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< |
template<> const MPI::Datatype MPITraits<RealType>::datatype = MPI_REALTYPE; |
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< |
template<> const int MPITraits<RealType>::dim = 1; |
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< |
template<> const MPI::Datatype MPITraits<Vector3d>::datatype = MPI_REALTYPE; |
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< |
template<> const int MPITraits<Vector3d>::dim = 3; |
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< |
template<> const MPI::Datatype MPITraits<Mat3x3d>::datatype = MPI_REALTYPE; |
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< |
template<> const int MPITraits<Mat3x3d>::dim = 9; |
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> |
template<> inline MPI::Datatype MPITraits<int>::Type() { return MPI_INT; } |
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> |
template<> inline MPI::Datatype MPITraits<RealType>::Type() { return MPI_REALTYPE; } |
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> |
|
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> |
template<class T, unsigned int Dim> |
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> |
class MPITraits< Vector<T, Dim> > { |
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> |
public: |
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> |
static MPI::Datatype Type() { return MPITraits<T>::Type(); } |
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> |
static int Length() {return Dim;} |
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> |
}; |
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> |
|
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> |
template<class T> |
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> |
class MPITraits< Vector3<T> > { |
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> |
public: |
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> |
static MPI::Datatype Type() { return MPITraits<T>::Type(); } |
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> |
static int Length() {return 3;} |
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> |
}; |
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> |
|
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> |
template<class T, unsigned int Row, unsigned int Col> |
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> |
class MPITraits< RectMatrix<T, Row, Col> > { |
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> |
public: |
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> |
static MPI::Datatype Type() { return MPITraits<T>::Type(); } |
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> |
static int Length() {return Row * Col;} |
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> |
}; |
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> |
|
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> |
template<class T> |
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> |
class MPITraits< SquareMatrix3<T> > { |
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> |
public: |
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> |
static MPI::Datatype Type() { return MPITraits<T>::Type(); } |
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> |
static int Length() {return 9;} |
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> |
}; |
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< |
template<direction D, typename T> |
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> |
|
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> |
template<communicatorType D, typename T> |
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class Communicator { |
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public: |
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rowIndex_ = myRank / nColumns; |
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columnIndex_ = myRank % nColumns; |
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< |
if (D == Row) { |
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> |
switch(D) { |
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> |
case Row : |
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myComm = MPI::COMM_WORLD.Split(rowIndex_, 0); |
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< |
} else { |
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> |
break; |
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> |
case Column: |
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myComm = MPI::COMM_WORLD.Split(columnIndex_, 0); |
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+ |
break; |
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+ |
case Global: |
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+ |
myComm = MPI::COMM_WORLD.Split(myRank, 0); |
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} |
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int nCommProcs = myComm.Get_size(); |
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counts.reserve(nCommProcs); |
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displacements.reserve(nCommProcs); |
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|
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< |
planSize_ = MPITraits<T>::dim * nObjects; |
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> |
planSize_ = MPITraits<T>::Length() * nObjects; |
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myComm.Allgather(&planSize_, 1, MPI::INT, &counts[0], 1, MPI::INT); |
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|
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– |
|
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displacements[0] = 0; |
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for (int i = 1; i < nCommProcs; i++) { |
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displacements[i] = displacements[i-1] + counts[i-1]; |
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< |
size_ += count[i-1]; |
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> |
size_ += counts[i-1]; |
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} |
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|
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size_ = 0; |
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} |
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} |
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|
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< |
|
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< |
void gather(std::vector<T>& v1, std::vector<T>& v2) { |
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> |
|
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> |
void gather(vector<T>& v1, vector<T>& v2) { |
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|
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myComm.Allgatherv(&v1[0], |
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planSize_, |
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< |
MPITraits<T>::datatype, |
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> |
MPITraits<T>::Type(), |
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|
&v2[0], |
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|
&counts[0], |
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|
&displacements[0], |
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< |
MPITraits<T>::datatype); |
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> |
MPITraits<T>::Type()); |
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} |
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– |
|
| 169 |
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|
| 170 |
< |
|
| 171 |
< |
void scatter(std::vector<T>& v1, std::vector<T>& v2) { |
| 172 |
< |
|
| 170 |
> |
|
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> |
|
| 172 |
> |
void scatter(vector<T>& v1, vector<T>& v2) { |
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> |
|
| 174 |
|
myComm.Reduce_scatter(&v1[0], &v2[0], &counts[0], |
| 175 |
< |
MPITraits<T>::datatype, MPI::SUM); |
| 175 |
> |
MPITraits<T>::Type(), MPI::SUM); |
| 176 |
|
} |
| 177 |
< |
|
| 177 |
> |
|
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|
int getSize() { |
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|
return size_; |
| 180 |
|
} |
| 184 |
|
int rowIndex_; |
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int columnIndex_; |
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int size_; |
| 187 |
< |
std::vector<int> counts; |
| 188 |
< |
std::vector<int> displacements; |
| 187 |
> |
vector<int> counts; |
| 188 |
> |
vector<int> displacements; |
| 189 |
|
MPI::Intracomm myComm; |
| 190 |
|
}; |
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|
