# | Line 91 | Line 91 | namespace OpenMD { | |
---|---|---|
91 | ||
92 | virtual void distributeInitialData() = 0; | |
93 | virtual void distributeData() = 0; | |
94 | + | virtual void zeroWorkArrays() = 0; |
95 | virtual void collectIntermediateData() = 0; | |
96 | virtual void distributeIntermediateData() = 0; | |
97 | virtual void collectData() = 0; | |
98 | + | virtual potVec getLongRangePotential() { return longRangePot_; } |
99 | ||
100 | // neighbor list routines | |
101 | virtual bool checkNeighborList(); | |
# | Line 116 | Line 118 | namespace OpenMD { | |
118 | virtual Vector3d getInteratomicVector(int atom1, int atom2) = 0; | |
119 | ||
120 | // atom bookkeeping | |
121 | < | virtual vector<int> getAtomList() = 0; |
122 | < | virtual vector<int> getSkipsForAtom(int atom1) = 0; |
121 | > | virtual int getNAtomsInRow() = 0; |
122 | > | virtual vector<int> getSkipsForRowAtom(int atom1) = 0; |
123 | virtual bool skipAtomPair(int atom1, int atom2) = 0; | |
124 | virtual void addForceToAtomRow(int atom1, Vector3d fg) = 0; | |
125 | virtual void addForceToAtomColumn(int atom2, Vector3d fg) = 0; | |
126 | ||
127 | // filling interaction blocks with pointers | |
128 | virtual InteractionData fillInteractionData(int atom1, int atom2) = 0; | |
129 | + | virtual void unpackInteractionData(InteractionData idat, int atom1, int atom2) = 0; |
130 | virtual InteractionData fillSkipData(int atom1, int atom2) = 0; | |
131 | virtual SelfData fillSelfData(int atom1); | |
132 | ||
# | Line 131 | Line 134 | namespace OpenMD { | |
134 | SimInfo* info_; | |
135 | SnapshotManager* sman_; | |
136 | Snapshot* snap_; | |
137 | + | ForceField* ff_; |
138 | int storageLayout_; | |
139 | RealType skinThickness_; /**< Verlet neighbor list skin thickness */ | |
140 | ||
# | Line 160 | Line 164 | namespace OpenMD { | |
164 | Vector3i nCells_; | |
165 | vector<vector<int> > cellList_; | |
166 | vector<Vector3d> saved_CG_positions_; | |
167 | + | potVec longRangePot_; |
168 | ||
169 | }; | |
170 | } |
– | Removed lines |
+ | Added lines |
< | Changed lines |
> | Changed lines |