| 101 | 
  | 
    virtual void collectIntermediateData() = 0; | 
| 102 | 
  | 
    virtual void distributeIntermediateData() = 0; | 
| 103 | 
  | 
    virtual void collectData() = 0; | 
| 104 | 
+ | 
    virtual void collectSelfData() = 0; | 
| 105 | 
  | 
    virtual potVec* getEmbeddingPotential() { return &embeddingPot; } | 
| 106 | 
  | 
    virtual potVec* getPairwisePotential() { return &pairwisePot; } | 
| 107 | 
  | 
 | 
| 133 | 
  | 
    // atom bookkeeping | 
| 134 | 
  | 
    virtual int getNAtomsInRow() = 0; | 
| 135 | 
  | 
    virtual vector<int> getExcludesForAtom(int atom1) = 0; | 
| 136 | 
< | 
    virtual bool skipAtomPair(int atom1, int atom2) = 0; | 
| 136 | 
> | 
    virtual bool skipAtomPair(int atom1, int atom2, int cg1, int cg2) = 0; | 
| 137 | 
  | 
    virtual bool excludeAtomPair(int atom1, int atom2) = 0; | 
| 138 | 
  | 
    virtual int getTopologicalDistance(int atom1, int atom2) = 0; | 
| 139 | 
  | 
    virtual void addForceToAtomRow(int atom1, Vector3d fg) = 0; |