| 1 | < | /* | 
| 1 | > | /* | 
| 2 |  | * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. | 
| 3 |  | * | 
| 4 |  | * The University of Notre Dame grants you ("Licensee") a | 
| 52 |  | #include "primitives/Atom.hpp" | 
| 53 |  | #include "types/BendType.hpp" | 
| 54 |  | namespace oopse { | 
| 55 | + | struct BendData { | 
| 56 | + | double angle; | 
| 57 | + | double potential; | 
| 58 | + | }; | 
| 59 |  |  | 
| 60 | < | class Bend { | 
| 61 | < | public: | 
| 62 | < | Bend(Atom* atom1, Atom* atom2, Atom* atom3, BendType* bt) | 
| 63 | < | : atom1_(atom1), atom2_(atom2), atom3_(atom3), bendType_(bt) {} | 
| 60 | > | struct BendDataSet { | 
| 61 | > | double deltaV; | 
| 62 | > | BendData prev; | 
| 63 | > | BendData curr; | 
| 64 | > | }; | 
| 65 |  |  | 
| 66 | + | class Bend { | 
| 67 | + | public: | 
| 68 | + | Bend(Atom* atom1, Atom* atom2, Atom* atom3, BendType* bt) | 
| 69 | + | : atom1_(atom1), atom2_(atom2), atom3_(atom3), bendType_(bt) {} | 
| 70 |  |  | 
| 71 | < | virtual void calcForce(); | 
| 71 | > | virtual ~Bend() {} | 
| 72 | > | virtual void calcForce(double& angle); | 
| 73 |  |  | 
| 74 | < | double getPotential() { | 
| 75 | < | return potential_; | 
| 76 | < | } | 
| 74 | > | double getPotential() { | 
| 75 | > | return potential_; | 
| 76 | > | } | 
| 77 |  |  | 
| 78 | < | Atom* getAtomA() { | 
| 79 | < | return atom1_; | 
| 80 | < | } | 
| 78 | > | Atom* getAtomA() { | 
| 79 | > | return atom1_; | 
| 80 | > | } | 
| 81 |  |  | 
| 82 | < | Atom* getAtomB() { | 
| 83 | < | return atom2_; | 
| 84 | < | } | 
| 82 | > | Atom* getAtomB() { | 
| 83 | > | return atom2_; | 
| 84 | > | } | 
| 85 |  |  | 
| 86 | < | Atom* getAtomC() { | 
| 87 | < | return atom3_; | 
| 88 | < | } | 
| 86 | > | Atom* getAtomC() { | 
| 87 | > | return atom3_; | 
| 88 | > | } | 
| 89 |  |  | 
| 90 | < | BendType * getBendType() { | 
| 91 | < | return bendType_; | 
| 92 | < | } | 
| 90 | > | BendType * getBendType() { | 
| 91 | > | return bendType_; | 
| 92 | > | } | 
| 93 |  |  | 
| 94 | < | protected: | 
| 94 | > | protected: | 
| 95 |  |  | 
| 96 | < | double potential_; | 
| 97 | < | Atom* atom1_; | 
| 98 | < | Atom* atom2_; | 
| 99 | < | Atom* atom3_; | 
| 100 | < | BendType* bendType_; /**< bend type */ | 
| 96 | > | double potential_; | 
| 97 | > | Atom* atom1_; | 
| 98 | > | Atom* atom2_; | 
| 99 | > | Atom* atom3_; | 
| 100 | > | BendType* bendType_; /**< bend type */ | 
| 101 |  |  | 
| 102 | < | }; | 
| 102 | > | }; | 
| 103 |  |  | 
| 104 |  |  | 
| 105 |  |  |