| 35 |
|
* |
| 36 |
|
* [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). |
| 37 |
|
* [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). |
| 38 |
< |
* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). |
| 39 |
< |
* [4] Vardeman & Gezelter, in progress (2009). |
| 38 |
> |
* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008). |
| 39 |
> |
* [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). |
| 40 |
> |
* [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). |
| 41 |
|
*/ |
| 42 |
|
|
| 43 |
|
/** |
| 62 |
|
atom2_(atom2), |
| 63 |
|
bondType_(bt) {} |
| 64 |
|
virtual ~Bond() {} |
| 65 |
< |
void calcForce() { |
| 65 |
> |
void calcForce(bool doParticlePot) { |
| 66 |
|
RealType len; |
| 67 |
|
RealType dvdr; |
| 68 |
|
Vector3d r12; |
| 76 |
|
|
| 77 |
|
atom1_->addFrc(-force); |
| 78 |
|
atom2_->addFrc(force); |
| 79 |
< |
|
| 80 |
< |
atom1_->addParticlePot(potential_); |
| 81 |
< |
atom2_->addParticlePot(potential_); |
| 79 |
> |
if (doParticlePot) { |
| 80 |
> |
atom1_->addParticlePot(potential_); |
| 81 |
> |
atom2_->addParticlePot(potential_); |
| 82 |
> |
} |
| 83 |
|
} |
| 84 |
|
|
| 85 |
|
RealType getPotential() { |