| 90 |
|
|
| 91 |
|
// build the scaling factor used to modulate the forces and torques |
| 92 |
|
factor_ = pow(tIntLambda_, tIntK_); |
| 93 |
+ |
|
| 94 |
+ |
printf("%f is the factor\n",factor_); |
| 95 |
|
|
| 96 |
|
} |
| 97 |
|
|
| 108 |
|
Vector3d frc; |
| 109 |
|
Vector3d trq; |
| 110 |
|
|
| 109 |
– |
curSnapshot = info_->getSnapshotManager()->getCurrentSnapshot(); |
| 110 |
– |
|
| 111 |
|
// perform the standard calcForces first |
| 112 |
|
ForceManager::calcForces(needPotential, needStress); |
| 113 |
|
|
| 114 |
+ |
curSnapshot = info_->getSnapshotManager()->getCurrentSnapshot(); |
| 115 |
+ |
|
| 116 |
|
// now scale forces and torques of all the integrableObjects |
| 117 |
|
|
| 118 |
|
for (mol = info_->beginMolecule(mi); mol != NULL; |
| 130 |
|
integrableObject->setTrq(trq); |
| 131 |
|
} |
| 132 |
|
} |
| 131 |
– |
|
| 132 |
– |
// set vraw to be the unmodulated potential |
| 133 |
– |
lrPot_ = curSnapshot->statData[Stats::POTENTIAL_ENERGY]; |
| 134 |
– |
curSnapshot->statData[Stats::VRAW] = lrPot_; |
| 135 |
– |
|
| 136 |
– |
// modulate the potential and update the snapshot |
| 137 |
– |
lrPot_ *= factor_; |
| 138 |
– |
curSnapshot->statData[Stats::POTENTIAL_ENERGY] = lrPot_; |
| 133 |
|
} |
| 134 |
+ |
|
| 135 |
+ |
// set vraw to be the unmodulated potential |
| 136 |
+ |
lrPot_ = curSnapshot->statData[Stats::LONG_RANGE_POTENTIAL]; |
| 137 |
+ |
curSnapshot->statData[Stats::VRAW] = lrPot_; |
| 138 |
|
|
| 139 |
+ |
// modulate the potential and update the snapshot |
| 140 |
+ |
lrPot_ *= factor_; |
| 141 |
+ |
curSnapshot->statData[Stats::LONG_RANGE_POTENTIAL] = lrPot_; |
| 142 |
+ |
|
| 143 |
+ |
|
| 144 |
|
// do crystal restraint forces for thermodynamic integration |
| 145 |
|
if (simParam->getUseSolidThermInt()) { |
| 146 |
|
|
| 147 |
|
lrPot_ += restraint_->Calc_Restraint_Forces(); |
| 148 |
< |
curSnapshot->statData[Stats::POTENTIAL_ENERGY] = lrPot_; |
| 148 |
> |
curSnapshot->statData[Stats::LONG_RANGE_POTENTIAL] = lrPot_; |
| 149 |
|
|
| 150 |
|
vHarm_ = restraint_->getVharm(); |
| 151 |
|
curSnapshot->statData[Stats::VHARM] = vHarm_; |