| 78 |
|
root_->bs.setAll(); // |
| 79 |
|
|
| 80 |
|
for (mol = info_->beginMolecule(mi); mol != NULL; mol = info_->nextMolecule(mi)) { |
| 81 |
< |
TreeNode* currentMolNode; |
| 81 |
> |
|
| 82 |
|
std::string molName = mol->getMoleculeName(); |
| 83 |
< |
|
| 84 |
< |
foundIter = root_->children.find(molName); |
| 85 |
< |
if ( foundIter == root_->children.end()) { |
| 86 |
< |
currentMolNode = new TreeNode; |
| 87 |
< |
currentMolNode->name = molName; |
| 88 |
< |
currentMolNode->bs.resize(nStuntDouble_); |
| 89 |
< |
}else { |
| 90 |
< |
currentMolNode = foundIter->second; |
| 91 |
< |
} |
| 83 |
> |
TreeNode* currentMolNode = createNode(root_, molName); |
| 84 |
|
|
| 85 |
|
for(atom = mol->beginAtom(ai); atom != NULL; atom = mol->nextAtom(ai)) { |
| 86 |
|
std::string atomName = atom->getType(); |
| 87 |
< |
TreeNode* currentAtomNode; |
| 88 |
< |
foundIter = currentMolNode->children.find(molName); |
| 97 |
< |
if (foundIter == currentMolNode->children.end()) { |
| 98 |
< |
currentAtomNode = new TreeNode; |
| 99 |
< |
currentAtomNode->name = atomName; |
| 100 |
< |
currentAtomNode->bs.resize(nStuntDouble_); |
| 101 |
< |
} else { |
| 102 |
< |
currentAtomNode = foundIter->second; |
| 103 |
< |
} |
| 87 |
> |
TreeNode* currentAtomNode = createNode(currentMolNode, atomName); |
| 88 |
> |
|
| 89 |
|
currentMolNode->bs.setBitOn(atom->getGlobalIndex()); |
| 90 |
|
currentAtomNode->bs.setBitOn(atom->getGlobalIndex()); |
| 91 |
|
} |
| 92 |
|
|
| 93 |
|
for (rb = mol->beginRigidBody(rbIter); rb != NULL; rb = mol->nextRigidBody(rbIter)) { |
| 94 |
< |
std::string rbName = atom->getType(); |
| 95 |
< |
TreeNode* currentRbNode; |
| 111 |
< |
foundIter = currentMolNode->children.find(molName); |
| 112 |
< |
if (foundIter == currentMolNode->children.end()) { |
| 113 |
< |
currentRbNode = new TreeNode; |
| 114 |
< |
currentRbNode->name = rbName; |
| 115 |
< |
currentRbNode->bs.resize(nStuntDouble_); |
| 116 |
< |
} else { |
| 117 |
< |
currentRbNode = foundIter->second; |
| 118 |
< |
} |
| 94 |
> |
std::string rbName = rb->getType(); |
| 95 |
> |
TreeNode* currentRbNode = createNode(currentMolNode, rbName); |
| 96 |
|
|
| 97 |
|
currentMolNode->bs.setBitOn(rb->getGlobalIndex()); |
| 98 |
|
currentRbNode->bs.setBitOn(rb->getGlobalIndex()); |
| 99 |
|
|
| 100 |
|
//create nodes for atoms belong to this rigidbody |
| 101 |
< |
for(atom = rb->beginAtom(ai); rb != NULL; atom = rb->nextAtom(ai)) { |
| 101 |
> |
for(atom = rb->beginAtom(ai); atom != NULL; atom = rb->nextAtom(ai)) { |
| 102 |
|
std::string rbAtomName = atom->getType(); |
| 103 |
< |
TreeNode* currentRbAtomNode; |
| 104 |
< |
foundIter = currentRbNode->children.find(molName); |
| 128 |
< |
if (foundIter == currentRbNode->children.end()) { |
| 129 |
< |
currentRbAtomNode = new TreeNode; |
| 130 |
< |
currentRbAtomNode->name = rbAtomName; |
| 131 |
< |
currentRbAtomNode->bs.resize(nStuntDouble_); |
| 132 |
< |
} else { |
| 133 |
< |
currentRbAtomNode = foundIter->second; |
| 134 |
< |
} |
| 103 |
> |
TreeNode* currentRbAtomNode = createNode(currentRbNode, rbName);; |
| 104 |
> |
|
| 105 |
|
currentRbAtomNode->bs.setBitOn(atom->getGlobalIndex()); |
| 106 |
|
} |
| 107 |
|
|
| 111 |
|
|
| 112 |
|
} |
| 113 |
|
|
| 114 |
< |
bool NameFinder::match(const std::string& name, BitSet& bs){ |
| 114 |
> |
TreeNode* NameFinder::createNode(TreeNode* parent, const std::string& name) { |
| 115 |
> |
TreeNode* node; |
| 116 |
> |
std::map<std::string, TreeNode*>::iterator foundIter; |
| 117 |
> |
foundIter = parent->children.find(name); |
| 118 |
> |
if ( foundIter == parent->children.end()) { |
| 119 |
> |
node = new TreeNode; |
| 120 |
> |
node->name = name; |
| 121 |
> |
node->bs.resize(nStuntDouble_); |
| 122 |
> |
parent->children.insert(std::make_pair(name, node)); |
| 123 |
> |
}else { |
| 124 |
> |
node = foundIter->second; |
| 125 |
> |
} |
| 126 |
> |
return node; |
| 127 |
> |
} |
| 128 |
|
|
| 129 |
< |
bool hasError = false; |
| 129 |
> |
BitSet NameFinder::match(const std::string& name){ |
| 130 |
> |
BitSet bs(nStuntDouble_); |
| 131 |
> |
|
| 132 |
|
StringTokenizer tokenizer(name, "."); |
| 133 |
|
|
| 134 |
|
std::vector<std::string> names; |
| 160 |
|
matchRigidAtoms(names[0], names[1], names[2], bs); |
| 161 |
|
break; |
| 162 |
|
default: |
| 163 |
< |
hasError = true; |
| 163 |
> |
std::cerr << "invalid name: " << name << std::endl; |
| 164 |
|
break; |
| 165 |
|
} |
| 166 |
|
|
| 167 |
< |
return hasError; |
| 167 |
> |
return bs; |
| 168 |
|
} |
| 169 |
|
|
| 170 |
|
void NameFinder::matchMolecule(const std::string& molName, BitSet& bs) { |
