--- trunk/src/selection/NameFinder.cpp 2005/02/04 05:42:49 287 +++ trunk/src/selection/NameFinder.cpp 2005/02/04 22:39:26 288 @@ -78,60 +78,30 @@ void NameFinder::loadNames() { root_->bs.setAll(); // for (mol = info_->beginMolecule(mi); mol != NULL; mol = info_->nextMolecule(mi)) { - TreeNode* currentMolNode; + std::string molName = mol->getMoleculeName(); - - foundIter = root_->children.find(molName); - if ( foundIter == root_->children.end()) { - currentMolNode = new TreeNode; - currentMolNode->name = molName; - currentMolNode->bs.resize(nStuntDouble_); - }else { - currentMolNode = foundIter->second; - } + TreeNode* currentMolNode = createNode(root_, molName); for(atom = mol->beginAtom(ai); atom != NULL; atom = mol->nextAtom(ai)) { std::string atomName = atom->getType(); - TreeNode* currentAtomNode; - foundIter = currentMolNode->children.find(molName); - if (foundIter == currentMolNode->children.end()) { - currentAtomNode = new TreeNode; - currentAtomNode->name = atomName; - currentAtomNode->bs.resize(nStuntDouble_); - } else { - currentAtomNode = foundIter->second; - } + TreeNode* currentAtomNode = createNode(currentMolNode, atomName); + currentMolNode->bs.setBitOn(atom->getGlobalIndex()); currentAtomNode->bs.setBitOn(atom->getGlobalIndex()); } for (rb = mol->beginRigidBody(rbIter); rb != NULL; rb = mol->nextRigidBody(rbIter)) { - std::string rbName = atom->getType(); - TreeNode* currentRbNode; - foundIter = currentMolNode->children.find(molName); - if (foundIter == currentMolNode->children.end()) { - currentRbNode = new TreeNode; - currentRbNode->name = rbName; - currentRbNode->bs.resize(nStuntDouble_); - } else { - currentRbNode = foundIter->second; - } + std::string rbName = rb->getType(); + TreeNode* currentRbNode = createNode(currentMolNode, rbName); currentMolNode->bs.setBitOn(rb->getGlobalIndex()); currentRbNode->bs.setBitOn(rb->getGlobalIndex()); //create nodes for atoms belong to this rigidbody - for(atom = rb->beginAtom(ai); rb != NULL; atom = rb->nextAtom(ai)) { + for(atom = rb->beginAtom(ai); atom != NULL; atom = rb->nextAtom(ai)) { std::string rbAtomName = atom->getType(); - TreeNode* currentRbAtomNode; - foundIter = currentRbNode->children.find(molName); - if (foundIter == currentRbNode->children.end()) { - currentRbAtomNode = new TreeNode; - currentRbAtomNode->name = rbAtomName; - currentRbAtomNode->bs.resize(nStuntDouble_); - } else { - currentRbAtomNode = foundIter->second; - } + TreeNode* currentRbAtomNode = createNode(currentRbNode, rbName);; + currentRbAtomNode->bs.setBitOn(atom->getGlobalIndex()); } @@ -141,9 +111,24 @@ void NameFinder::loadNames() { } -bool NameFinder::match(const std::string& name, BitSet& bs){ +TreeNode* NameFinder::createNode(TreeNode* parent, const std::string& name) { + TreeNode* node; + std::map::iterator foundIter; + foundIter = parent->children.find(name); + if ( foundIter == parent->children.end()) { + node = new TreeNode; + node->name = name; + node->bs.resize(nStuntDouble_); + parent->children.insert(std::make_pair(name, node)); + }else { + node = foundIter->second; + } + return node; +} - bool hasError = false; +BitSet NameFinder::match(const std::string& name){ + BitSet bs(nStuntDouble_); + StringTokenizer tokenizer(name, "."); std::vector names; @@ -175,11 +160,11 @@ bool NameFinder::match(const std::string& name, BitSet matchRigidAtoms(names[0], names[1], names[2], bs); break; default: - hasError = true; + std::cerr << "invalid name: " << name << std::endl; break; } - return hasError; + return bs; } void NameFinder::matchMolecule(const std::string& molName, BitSet& bs) {