| 115 | 
  | 
    return loadScript(filename, script); | 
| 116 | 
  | 
  } | 
| 117 | 
  | 
 | 
| 118 | 
< | 
  void SelectionEvaluator::instructionDispatchLoop(BitSet& bs){ | 
| 118 | 
> | 
  void SelectionEvaluator::instructionDispatchLoop(OOPSEBitSet& bs){ | 
| 119 | 
  | 
     | 
| 120 | 
  | 
    while ( pc < aatoken.size()) { | 
| 121 | 
  | 
      statement = aatoken[pc++]; | 
| 136 | 
  | 
 | 
| 137 | 
  | 
  } | 
| 138 | 
  | 
 | 
| 139 | 
< | 
  BitSet SelectionEvaluator::expression(const std::vector<Token>& code, int pcStart) { | 
| 140 | 
< | 
    BitSet bs; | 
| 141 | 
< | 
    std::stack<BitSet> stack; | 
| 139 | 
> | 
  OOPSEBitSet SelectionEvaluator::expression(const std::vector<Token>& code, int pcStart) { | 
| 140 | 
> | 
    OOPSEBitSet bs; | 
| 141 | 
> | 
    std::stack<OOPSEBitSet> stack; | 
| 142 | 
  | 
     | 
| 143 | 
  | 
    for (int pc = pcStart; pc < code.size(); ++pc) { | 
| 144 | 
  | 
      Token instruction = code[pc]; | 
| 149 | 
  | 
      case Token::expressionEnd: | 
| 150 | 
  | 
        break; | 
| 151 | 
  | 
      case Token::all: | 
| 152 | 
< | 
        bs = BitSet(nStuntDouble); | 
| 152 | 
> | 
        bs = OOPSEBitSet(nStuntDouble); | 
| 153 | 
  | 
        bs.setAll(); | 
| 154 | 
  | 
        stack.push(bs);             | 
| 155 | 
  | 
        break; | 
| 156 | 
  | 
      case Token::none: | 
| 157 | 
< | 
        bs = BitSet(nStuntDouble); | 
| 157 | 
> | 
        bs = OOPSEBitSet(nStuntDouble); | 
| 158 | 
  | 
        stack.push(bs);             | 
| 159 | 
  | 
        break; | 
| 160 | 
  | 
      case Token::opOr: | 
| 206 | 
  | 
 | 
| 207 | 
  | 
 | 
| 208 | 
  | 
 | 
| 209 | 
< | 
  BitSet SelectionEvaluator::comparatorInstruction(const Token& instruction) { | 
| 209 | 
> | 
  OOPSEBitSet SelectionEvaluator::comparatorInstruction(const Token& instruction) { | 
| 210 | 
  | 
    int comparator = instruction.tok; | 
| 211 | 
  | 
    int property = instruction.intValue; | 
| 212 | 
  | 
    float comparisonValue = boost::any_cast<float>(instruction.value); | 
| 213 | 
  | 
    float propertyValue; | 
| 214 | 
< | 
    BitSet bs(nStuntDouble); | 
| 214 | 
> | 
    OOPSEBitSet bs(nStuntDouble); | 
| 215 | 
  | 
    bs.clearAll(); | 
| 216 | 
  | 
     | 
| 217 | 
  | 
    SimInfo::MoleculeIterator mi; | 
| 235 | 
  | 
    return bs; | 
| 236 | 
  | 
  } | 
| 237 | 
  | 
 | 
| 238 | 
< | 
  void SelectionEvaluator::compareProperty(StuntDouble* sd, BitSet& bs, int property, int comparator, float comparisonValue) { | 
| 239 | 
< | 
    double propertyValue = 0.0; | 
| 238 | 
> | 
  void SelectionEvaluator::compareProperty(StuntDouble* sd, OOPSEBitSet& bs, int property, int comparator, float comparisonValue) { | 
| 239 | 
> | 
    RealType propertyValue = 0.0; | 
| 240 | 
  | 
    switch (property) { | 
| 241 | 
  | 
    case Token::mass: | 
| 242 | 
  | 
      propertyValue = sd->getMass(); | 
| 254 | 
  | 
        } | 
| 255 | 
  | 
      } | 
| 256 | 
  | 
      break; | 
| 257 | 
+ | 
    case Token::x: | 
| 258 | 
+ | 
      propertyValue = sd->getPos().x(); | 
| 259 | 
+ | 
      break; | 
| 260 | 
+ | 
    case Token::y: | 
| 261 | 
+ | 
      propertyValue = sd->getPos().y(); | 
| 262 | 
+ | 
      break; | 
| 263 | 
+ | 
    case Token::z: | 
| 264 | 
+ | 
      propertyValue = sd->getPos().z(); | 
| 265 | 
+ | 
      break; | 
| 266 | 
  | 
    default: | 
| 267 | 
  | 
      unrecognizedAtomProperty(property); | 
| 268 | 
  | 
    } | 
| 293 | 
  | 
 | 
| 294 | 
  | 
  } | 
| 295 | 
  | 
 | 
| 296 | 
< | 
  void SelectionEvaluator::withinInstruction(const Token& instruction, BitSet& bs){ | 
| 296 | 
> | 
  void SelectionEvaluator::withinInstruction(const Token& instruction, OOPSEBitSet& bs){ | 
| 297 | 
  | 
     | 
| 298 | 
  | 
    boost::any withinSpec = instruction.value; | 
| 299 | 
  | 
    float distance; | 
| 350 | 
  | 
 | 
| 351 | 
  | 
  } | 
| 352 | 
  | 
 | 
| 353 | 
< | 
  void SelectionEvaluator::select(BitSet& bs){ | 
| 353 | 
> | 
  void SelectionEvaluator::select(OOPSEBitSet& bs){ | 
| 354 | 
  | 
    bs = expression(statement, 1); | 
| 355 | 
  | 
  } | 
| 356 | 
  | 
 | 
| 357 | 
< | 
  BitSet SelectionEvaluator::lookupValue(const std::string& variable){ | 
| 357 | 
> | 
  OOPSEBitSet SelectionEvaluator::lookupValue(const std::string& variable){ | 
| 358 | 
  | 
 | 
| 359 | 
< | 
    BitSet bs(nStuntDouble); | 
| 359 | 
> | 
    OOPSEBitSet bs(nStuntDouble); | 
| 360 | 
  | 
    std::map<std::string, boost::any>::iterator i = variables.find(variable); | 
| 361 | 
  | 
     | 
| 362 | 
  | 
    if (i != variables.end()) { | 
| 363 | 
< | 
      if (i->second.type() == typeid(BitSet)) { | 
| 364 | 
< | 
        return boost::any_cast<BitSet>(i->second); | 
| 363 | 
> | 
      if (i->second.type() == typeid(OOPSEBitSet)) { | 
| 364 | 
> | 
        return boost::any_cast<OOPSEBitSet>(i->second); | 
| 365 | 
  | 
      } else if (i->second.type() ==  typeid(std::vector<Token>)){ | 
| 366 | 
  | 
        bs = expression(boost::any_cast<std::vector<Token> >(i->second), 2); | 
| 367 | 
  | 
        i->second =  bs; /**@todo fixme */ | 
| 374 | 
  | 
    return bs; | 
| 375 | 
  | 
  } | 
| 376 | 
  | 
 | 
| 377 | 
< | 
  BitSet SelectionEvaluator::nameInstruction(const std::string& name){ | 
| 377 | 
> | 
  OOPSEBitSet SelectionEvaluator::nameInstruction(const std::string& name){ | 
| 378 | 
  | 
     | 
| 379 | 
  | 
    return nameFinder.match(name); | 
| 380 | 
  | 
 | 
| 397 | 
  | 
    //predefine(); | 
| 398 | 
  | 
  } | 
| 399 | 
  | 
 | 
| 400 | 
< | 
  BitSet SelectionEvaluator::evaluate() { | 
| 401 | 
< | 
    BitSet bs(nStuntDouble); | 
| 400 | 
> | 
  OOPSEBitSet SelectionEvaluator::evaluate() { | 
| 401 | 
> | 
    OOPSEBitSet bs(nStuntDouble); | 
| 402 | 
  | 
    if (isLoaded_) { | 
| 403 | 
  | 
      pc = 0; | 
| 404 | 
  | 
      instructionDispatchLoop(bs); | 
| 407 | 
  | 
    return bs; | 
| 408 | 
  | 
  } | 
| 409 | 
  | 
 | 
| 410 | 
< | 
  BitSet SelectionEvaluator::indexInstruction(const boost::any& value) { | 
| 411 | 
< | 
    BitSet bs(nStuntDouble); | 
| 410 | 
> | 
  OOPSEBitSet SelectionEvaluator::indexInstruction(const boost::any& value) { | 
| 411 | 
> | 
    OOPSEBitSet bs(nStuntDouble); | 
| 412 | 
  | 
 | 
| 413 | 
  | 
    if (value.type() == typeid(int)) { | 
| 414 | 
  | 
      int index = boost::any_cast<int>(value); | 
| 431 | 
  | 
  } | 
| 432 | 
  | 
 | 
| 433 | 
  | 
 | 
| 434 | 
< | 
  double SelectionEvaluator::getCharge(Atom* atom) { | 
| 435 | 
< | 
    double charge =0.0; | 
| 434 | 
> | 
  RealType SelectionEvaluator::getCharge(Atom* atom) { | 
| 435 | 
> | 
    RealType charge =0.0; | 
| 436 | 
  | 
    AtomType* atomType = atom->getAtomType(); | 
| 437 | 
  | 
    if (atomType->isCharge()) { | 
| 438 | 
  | 
      GenericData* data = atomType->getPropertyByName("Charge"); |